cluster # 1935

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Anopheles gambiae
cluster # 1935 cluster # 1935 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1935#0 length = 601 sequences # 1

consensus_1935#1 length = 305 sequences # 1

consensusID : consensus_1935#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 601
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGGCCGCCCTTTTTTTTTTTTTTTCTTGTGTAACTACTTTAATAACCGATTTATTTCCCATTCCGCACCATCTACAGATACTTTCCGAACCACTTGTGATCTACCGGAGACAACCATCGGTGGCAACCGCCGAGATTGTTCTGGATGATGTACTTAAAGTTCCACGGGTTTAGGTTTTCTCGTTCCAAACGCTCCTCCTCCGCTTTCATGTTTTCCAACATTTCCTGCGAAACCACCATTGCCTTGAACGGCAGCTTAGGACACACGATATCGAGAATTTTCTTCGCCTCTACAAATTCTAGCTCTCCCGCCAGCTCCACTATGACGCGCCCACTCTTCACCGGCGTAACGTAGTGATCGATGGCACCTTTACCACCACCCATGCGCTGGCCCTGGCCCTGCTTCGTCACCGGTTGCCACGGTGCCTCGACGCGCCAAATGGCAAACATGCGGCTCGTATCCATCTTGCGACCGATCGTCAATCGCAACATTTCATAGTGGCCCCATCGTAATCGGCCTCCCCCCGTCGCTACTATGCCGTACTGCTTGTGAACGAGCGAATTGTGCACCAGCTC]

[+] EMBL BM582591             [CCGCCCACGCGTCCGCCCACGCGTCCGGGCCGCCCTTTTTTTTTTTTTTTCTTGTGTAACTACTTTAATAACCGATTTATTTCCCATTCCGCACCATCTACAGATACTTTCCGAACCACTTGTGATCTACCGGAGACAACCATCGGTGGCAACCGCCGAGATTGTTCTGGATGATGTACTTAAAGTTCCACGGGTTTAGGTTTTCTCGTTCCAAACGCTCCTCCTCCGCTTTCATGTTTTCCAACATTTCCTGCGAAACCACCATTGCCTTGAACGGCAGCTTAGGACACACGATATCGAGAATTTTCTTCGCCTCTACAAATTCTAGCTCTCCCGCCAGCTCCACTATGACGCGCCCACTCTTCACCGGCGTAACGTAGTGATCGATGGCACCTTTACCACCACCCATGCGCTGGCCCTGGCCCTGCTTCGTCACCGGTTGCCACGGTGCCTCGACGCGCCAAATGGCAAACATGCGGCTCGTATCCATCTTGCGACCGATCGTCAATCGCAACATTTCATAGTGGCCCCATCGTAATCGGCCTCCCCCCGTCGCTACTATGCCGTACTGCTTGTGAACGAGCGAATTGTGCACCAGCTC]




>consensus_1935#0
CCGCCCACGCGTCCGCCCACGCGTCCGGGCCGCCCTTTTTTTTTTTTTTTCTTGTGTAAC
TACTTTAATAACCGATTTATTTCCCATTCCGCACCATCTACAGATACTTTCCGAACCACT
TGTGATCTACCGGAGACAACCATCGGTGGCAACCGCCGAGATTGTTCTGGATGATGTACT
TAAAGTTCCACGGGTTTAGGTTTTCTCGTTCCAAACGCTCCTCCTCCGCTTTCATGTTTT
CCAACATTTCCTGCGAAACCACCATTGCCTTGAACGGCAGCTTAGGACACACGATATCGA
GAATTTTCTTCGCCTCTACAAATTCTAGCTCTCCCGCCAGCTCCACTATGACGCGCCCAC
TCTTCACCGGCGTAACGTAGTGATCGATGGCACCTTTACCACCACCCATGCGCTGGCCCT
GGCCCTGCTTCGTCACCGGTTGCCACGGTGCCTCGACGCGCCAAATGGCAAACATGCGGC
TCGTATCCATCTTGCGACCGATCGTCAATCGCAACATTTCATAGTGGCCCCATCGTAATC
GGCCTCCCCCCGTCGCTACTATGCCGTACTGCTTGTGAACGAGCGAATTGTGCACCAGCT
C

consensusID : consensus_1935#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 305
fasta sequence

                              [TTAGATTGAATTGTAATTGTTATTATCCCGCAAGTCTGGGTCCAAAATGCTGGCCAACTGTGAAAAGCTGCGACCATTGCTTTCGGGCTTGTTGCATGGTCAGTTCGGTCAGCAGATTGCCGGCATGAAGTTTTTTGCTCCACCGATTAAATATGACAATATTCAGATCCCAGAAAAGCCCAAACTCCGCTTTATGGACAAAGTTCCGCAGCTGCCGAGCAATCTCCGTGCACCAAAGATGCAGAAGAAGCTGAAATGGATGCGCGGCCCTGAGCTGGTGCACAATTCGCTTGTTCACAAGCAGT]

[+] EMBL BX614120             [TTAGATTGAATTGTAATTGTTATTATCCCGCAAGTCTGGGTCCAAAATGCTGGCCAACTGTGAAAAGCTGCGACCATTGCTTTCGGGCTTGTTGCATGGTCAGTTCGGTCAGCAGATTGCCGGCATGAAGTTTTTTGCTCCACCGATTAAATATGACAATATTCAGATCCCAGAAAAGCCCAAACTCCGCTTTATGGACAAAGTTCCGCAGCTGCCGAGCAATCTCCGTGCACCAAAGATGCAGAAGAAGCTGAAATGGATGCGCGGCCCTGAGCTGGTGCACAATTCGCTTGTTCACAAGCAGT]




>consensus_1935#1
TTAGATTGAATTGTAATTGTTATTATCCCGCAAGTCTGGGTCCAAAATGCTGGCCAACTG
TGAAAAGCTGCGACCATTGCTTTCGGGCTTGTTGCATGGTCAGTTCGGTCAGCAGATTGC
CGGCATGAAGTTTTTTGCTCCACCGATTAAATATGACAATATTCAGATCCCAGAAAAGCC
CAAACTCCGCTTTATGGACAAAGTTCCGCAGCTGCCGAGCAATCTCCGTGCACCAAAGAT
GCAGAAGAAGCTGAAATGGATGCGCGGCCCTGAGCTGGTGCACAATTCGCTTGTTCACAA
GCAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1935#0      CCGCCCACGCGTCCGCCCACGCGTCCGGGCCGCCCTTTTTTTTTTTTTTTCTTGTGTAAC 60
consensus_1935#1      ------------------------------------------------------------
                                                                                  

consensus_1935#0      TACTTTAATAACCGATTTATTTCCCATTCCGCACCATCTACAGATACTTTCCGAACCACT 120
consensus_1935#1      ------------------------------------------------------------
                                                                                  

consensus_1935#0      TGTGATCTACCGGAGACAACCATCGGTGGCAACCGCCGAGATTGTTCTGGATGATGTACT 180
consensus_1935#1      ------------------------------------------------------------
                                                                                  

consensus_1935#0      TAAAGTTCCACGGGTTTAGGTTTTCTCGTTCCAAACGCTCCTCCTCCGCTTTCATGTTTT 240
consensus_1935#1      ------------------------------------------------------------
                                                                                  

consensus_1935#0      CCAACATTTCCTGCGAAACCACCATTGCCTTGAACGGCAGCTTAGGACACACGATATCGA 300
consensus_1935#1      -----------------------------------------TTAGATTGAATTGTAATTG 19
                                                               ****     *   **    

consensus_1935#0      GAATTTTCTTCGCCTCTACAAATTCTAGCTCTCCCGCCAGCTCCACTATGACGCGCCCAC 360
consensus_1935#1      TTATTATCC-CGCAAGTCTGGGTCCAAAATG-CTGGCCAACTGTGAAAAGCTGCGACCAT 77
                        *** **  ***   *     * * *  *  *  **** **     * *  *** *** 

consensus_1935#0      TCTTCACCGGCGTAACGTAGTGATCGATGGCACCTTTACCACCACCCATGCGCTGGCCCT 420
consensus_1935#1      TGCTTTCGGGCTTGTTGCA-TGGTCAGTTCGGTCAGCAG-ATTGCCGGCATGAAGTTTTT 135
                      *  *  * *** *   * * ** **  *     *   *  *   **     *  *    *

consensus_1935#0      GGCCCTGCTTCGTCACCGGTTGCCACGGTGCCTCGACGCGCCAAATGGCAAACATGCGGC 480
consensus_1935#1      TGCTCCACCG----ATTAAATATGACAATATTCAGATCCCAGAAAAGCCCAAACTCCGCT 191
                       ** *  *      *     *   **  *     **  *   *** * * **  * **  

consensus_1935#0      TCGTATCCA---TCTTGCGACCGATCGTCAATCGCAACATTTCATAGTGGCCCCA----T 533
consensus_1935#1      TTATGGACAAAGTTCCGCAGCTGCCGAGCAATCTCCGTGCACCAAAGATGCAGAAGAAGC 251
                      *  *   **   *   **  * *     ***** *       ** **  **   *     

consensus_1935#0      CGTAATCGGC-CTCCCCCCGTCGCTACTATGCCGTACTGCTTGTGAACGAGCGAATTGTG 592
consensus_1935#1      TGAAATGGATGCGCGGCCCTGAGCTGGTGCACAATTC-GCTTGTTCACAAGCAGT----- 305
                       * *** *   * *  ***   ***  *   *  * * ******  ** ***        

consensus_1935#0      CACCAGCTC 601
consensus_1935#1      ---------