cluster # 1937

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 1937 cluster # 1937 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1937#0 length = 531 sequences # 1

consensus_1937#1 length = 489 sequences # 1

consensusID : consensus_1937#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 531
fasta sequence

                              [ATCCCGAGGTTAATGGATGGTTCGCTGCGGANACTCGATCACCAGCATCTGTGCGGTGGCACGCTGCTAAGCAACCGGTTCGTCCTGTCGTCGGCCAACTGCTATGTCGGGGCGGCTGGCAACGGCCACCATGGCGGTGGCAGGATCCCGCTTCCTCAACACGGCCGCCATTCCGTACTATGGCATTCAGATCATAACGCACCCGAACTTTAACGTCAACACGCTCGAGCATGATGTCGCCCTGTTCCAGACGGCACTGCAGTTCATTTTGACCCAATCGGTCCAACCGCTGCCACTGTCGGCTGATGTGATTGGCGTGGGCGTTCGTGCCCGTGTCTTTGGCTGGGGAGCTTCGCAGGCCAACGGAGGAAACACCAACGCGCTGCAATTTTTTGAACGTAAACACGCTGAGCAATGACGACTGTGCCAACATTCCTCGGTGCGGAGGGATGGCGCATTGGACCGTACCTCGCTGTGTACGCTGACCCGCGAGGACAGGGCATCTGTGAGAGGGCGATGCAGGGCGGCGCA]

[+] EMBL AL933187             [ATCCCGAGGTTAATGGATGGTTCGCTGCGGANACTCGATCACCAGCATCTGTGCGGTGGCACGCTGCTAAGCAACCGGTTCGTCCTGTCGTCGGCCAACTGCTATGTCGGGGCGGCTGGCAACGGCCACCATGGCGGTGGCAGGATCCCGCTTCCTCAACACGGCCGCCATTCCGTACTATGGCATTCAGATCATAACGCACCCGAACTTTAACGTCAACACGCTCGAGCATGATGTCGCCCTGTTCCAGACGGCACTGCAGTTCATTTTGACCCAATCGGTCCAACCGCTGCCACTGTCGGCTGATGTGATTGGCGTGGGCGTTCGTGCCCGTGTCTTTGGCTGGGGAGCTTCGCAGGCCAACGGAGGAAACACCAACGCGCTGCAATTTTTTGAACGTAAACACGCTGAGCAATGACGACTGTGCCAACATTCCTCGGTGCGGAGGGATGGCGCATTGGACCGTACCTCGCTGTGTACGCTGACCCGCGAGGACAGGGCATCTGTGAGAGGGCGATGCAGGGCGGCGCA]




>consensus_1937#0
ATCCCGAGGTTAATGGATGGTTCGCTGCGGANACTCGATCACCAGCATCTGTGCGGTGGC
ACGCTGCTAAGCAACCGGTTCGTCCTGTCGTCGGCCAACTGCTATGTCGGGGCGGCTGGC
AACGGCCACCATGGCGGTGGCAGGATCCCGCTTCCTCAACACGGCCGCCATTCCGTACTA
TGGCATTCAGATCATAACGCACCCGAACTTTAACGTCAACACGCTCGAGCATGATGTCGC
CCTGTTCCAGACGGCACTGCAGTTCATTTTGACCCAATCGGTCCAACCGCTGCCACTGTC
GGCTGATGTGATTGGCGTGGGCGTTCGTGCCCGTGTCTTTGGCTGGGGAGCTTCGCAGGC
CAACGGAGGAAACACCAACGCGCTGCAATTTTTTGAACGTAAACACGCTGAGCAATGACG
ACTGTGCCAACATTCCTCGGTGCGGAGGGATGGCGCATTGGACCGTACCTCGCTGTGTAC
GCTGACCCGCGAGGACAGGGCATCTGTGAGAGGGCGATGCAGGGCGGCGCA

consensusID : consensus_1937#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 489
fasta sequence

                              [AGGGCAAGAANCGGCANTGTAGGCATGCTTGATNTTGCGGTGTATCGATGCGCNCTGCTTGTTGGTTGCTTCCGCGATCGCTGGACCGAACGGGCGCATCGTTAGGTGGCATTGATAGCCGATGGGCCGGAGATGCGCCCATGGGATGGTTTCGCTGCGGAACTCGATCAACCAGCATCTGTGCGGTGGCACGCTGCTAAGGCAACCTGGTTCGTCCATGTCGTCGGCCTAAACTGCTTNGTCGGCGGACGGACTGNGCAATCGGCCACCATGGCGGTGTGCAGGATCCCGCGTTCCTCAACACGGCCGCTCATTCCGTACTATGGCATTCAGGATCATAACGCACCCGTAACTTTAACGTCAAGCACGCTCGTAGCATGATGTCGCCCTGTTCCAGACTGGCACTGCAGTTCATTTNTGACCCAATCGGTCCAACCGCTGCCACTGTCGGCTGATGTGATTGGCGTGTGGCGTTCGTGCCCGTGTCTT]

[+] EMBL BX468522             [AGGGCAAGAANCGGCANTGTAGGCATGCTTGATNTTGCGGTGTATCGATGCGCNCTGCTTGTTGGTTGCTTCCGCGATCGCTGGACCGAACGGGCGCATCGTTAGGTGGCATTGATAGCCGATGGGCCGGAGATGCGCCCATGGGATGGTTTCGCTGCGGAACTCGATCAACCAGCATCTGTGCGGTGGCACGCTGCTAAGGCAACCTGGTTCGTCCATGTCGTCGGCCTAAACTGCTTNGTCGGCGGACGGACTGNGCAATCGGCCACCATGGCGGTGTGCAGGATCCCGCGTTCCTCAACACGGCCGCTCATTCCGTACTATGGCATTCAGGATCATAACGCACCCGTAACTTTAACGTCAAGCACGCTCGTAGCATGATGTCGCCCTGTTCCAGACTGGCACTGCAGTTCATTTNTGACCCAATCGGTCCAACCGCTGCCACTGTCGGCTGATGTGATTGGCGTGTGGCGTTCGTGCCCGTGTCTT]




>consensus_1937#1
AGGGCAAGAANCGGCANTGTAGGCATGCTTGATNTTGCGGTGTATCGATGCGCNCTGCTT
GTTGGTTGCTTCCGCGATCGCTGGACCGAACGGGCGCATCGTTAGGTGGCATTGATAGCC
GATGGGCCGGAGATGCGCCCATGGGATGGTTTCGCTGCGGAACTCGATCAACCAGCATCT
GTGCGGTGGCACGCTGCTAAGGCAACCTGGTTCGTCCATGTCGTCGGCCTAAACTGCTTN
GTCGGCGGACGGACTGNGCAATCGGCCACCATGGCGGTGTGCAGGATCCCGCGTTCCTCA
ACACGGCCGCTCATTCCGTACTATGGCATTCAGGATCATAACGCACCCGTAACTTTAACG
TCAAGCACGCTCGTAGCATGATGTCGCCCTGTTCCAGACTGGCACTGCAGTTCATTTNTG
ACCCAATCGGTCCAACCGCTGCCACTGTCGGCTGATGTGATTGGCGTGTGGCGTTCGTGC
CCGTGTCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1937#0      ------------------------------------------------------------
consensus_1937#1      AGGGCAAGAANCGGCANTGTAGGCATGCTTGATNTTGCGGTGTATCGATGCGCNCTGCTT 60
                                                                                  

consensus_1937#0      ------------------------------------------------------------
consensus_1937#1      GTTGGTTGCTTCCGCGATCGCTGGACCGAACGGGCGCATCGTTAGGTGGCATTGATAGCC 120
                                                                                  

consensus_1937#0      ----ATCCCGAGGT-----TAATGGATGGTT-CGCTGCGGANACTCGATCA-CCAGCATC 49
consensus_1937#1      GATGGGCCGGAGATGCGCCCATGGGATGGTTTCGCTGCGGAA-CTCGATCAACCAGCATC 179
                            ** *** *      *  ******** *********  ******** ********

consensus_1937#0      TGTGCGGTGGCACGCTGCTAAG-CAACC-GGTTCGTCC-TGTCGTCGGCC--AACTGCTA 104
consensus_1937#1      TGTGCGGTGGCACGCTGCTAAGGCAACCTGGTTCGTCCATGTCGTCGGCCTAAACTGCTT 239
                      ********************** ***** ********* ***********  ******* 

consensus_1937#0      TGTCGG--GGCGGCT--GGCAA-CGGCCACCATGGCGGTG-GCAGGATCCCGC-TTCCTC 157
consensus_1937#1      NGTCGGCGGACGGACTGNGCAATCGGCCACCATGGCGGTGTGCAGGATCCCGCGTTCCTC 299
                       *****  * ***     **** ***************** ************ ******

consensus_1937#0      AACACGGCCGC-CATTCCGTACTATGGCATTCAG-ATCATAACGCACCCG-AACTTTAAC 214
consensus_1937#1      AACACGGCCGCTCATTCCGTACTATGGCATTCAGGATCATAACGCACCCGTAACTTTAAC 359
                      *********** ********************** *************** *********

consensus_1937#0      GTCAA-CACGCTCG-AGCATGATGTCGCCCTGTTCCAGAC-GGCACTGCAGTTCATTTT- 270
consensus_1937#1      GTCAAGCACGCTCGTAGCATGATGTCGCCCTGTTCCAGACTGGCACTGCAGTTCATTTNT 419
                      ***** ******** ************************* *****************  

consensus_1937#0      GACCCAATCGGTCCAACCGCTGCCACTGTCGGCTGATGTGATTGGCGTG-GGCGTTCGTG 329
consensus_1937#1      GACCCAATCGGTCCAACCGCTGCCACTGTCGGCTGATGTGATTGGCGTGTGGCGTTCGTG 479
                      ************************************************* **********

consensus_1937#0      CCCGTGTCTTTGGCTGGGGAGCTTCGCAGGCCAACGGAGGAAACACCAACGCGCTGCAAT 389
consensus_1937#1      CCCGTGTCTT-------------------------------------------------- 489
                      **********                                                  

consensus_1937#0      TTTTTGAACGTAAACACGCTGAGCAATGACGACTGTGCCAACATTCCTCGGTGCGGAGGG 449
consensus_1937#1      ------------------------------------------------------------
                                                                                  

consensus_1937#0      ATGGCGCATTGGACCGTACCTCGCTGTGTACGCTGACCCGCGAGGACAGGGCATCTGTGA 509
consensus_1937#1      ------------------------------------------------------------
                                                                                  

consensus_1937#0      GAGGGCGATGCAGGGCGGCGCA 531
consensus_1937#1      ----------------------