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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1938#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 954 fasta sequence
[CGATCAAATAATGGCGGCGTCTAGTAAGCGTATCCAATTCAAAATAAAGCAAAAAGTATGAGTACGGAGGAAATCAGCTCATCTGGAACAGATGATGGACCACAATCGCTTGCCCGGCGGATAATACACTACTTCTACCACCGGCAAGCGATCGCCAAGGATGCGTGGGACATTGCCTTCTGGCAGGAGTTTCGCCGCCATCATCCAGACGTAACACTCGAACCGAAAGCGCTGCGGTCGTACTTTTTCCATGAAGTAATGCGCAACCCGCGCGAGTGGAGCAATCTCTCCTACGAGGTGATCCAGTACCTTAACCCGCTGTTTAACCGGATCCGCGAGGAGGTGCTCGAGTACCGGGATCTGGTCGAAGGTATCGATTACATAACGCCCAGTACGGCACAGATCCGCAGCTTCGTGGCCGCCGCACTAAGCGAACTGCTCTGGACGGAGGATGAAAACGAGACGAAGCCGACGCTCGACGCACAGGAATGCTTATCGCGCATTGCTGTGCTGACGTCCAATTCGATTGCGTTGCTCAACTGCATCGAGCCGGGCATGGCATGCTATGAGCGGTTTCATGGGGCGGATCCAGTGGAGAGGGCGGTTTTGCCGGAGGATGATACACCGGCGAGTGGACTAGAGGTGTCCGGTACACCCCGGATGCACCCGCTGGCATCATCCACGCCGATACCATCGACAAGCGGCCAGCCGGGTACTGTCCGTGGGCCCATTATTTCTTCCCGCACGCCAGCCTCCGTCCTGCGGCATGTTCGGAGCAAGCCCCGGAAGGGTGCATTCAAGAGAAATATCATGTAGAGTGAGTGGTTGGTTGCGCATTATTACATACTTACGTTCCTGTTGAATAATTTAAAGAACTTAAATACACTTCCAATGAACTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCAAAGGTGCC]
[+] EMBL CNS09DUD [CGATCAAATAATGGCGGCGTCTAGTAAGCGTATCCAATTCAAAATAAAGCAAAAAGTATGAGTACGGAGGAAATCAGCTCATCTGGAACAGATGATGGACCACAATCGCTTGCCCGGCGGATAATACACTACTTCTACCACCGGCAAGCGATCGCCAAGGATGCGTGGGACATTGCCTTCTGGCAGGAGTTTCGCCGCCATCATCCAGACGTAACACTCGAACCGAAAGCGCTGCGGTCGTACTTTTTCCATGAAGTAATGCGCAACCCGCGCGAGTGGAGCAATCTCTCCTACGAGGTGATCCAGTACCTTAACCCGCTGTTTAACCGGATCCGCGAGGAGGTGCTCGAGTACCGGGATCTGGTCGAAGGTATCGATTACATAACGCCCAGTACGGCACAGATCCGCAGCTTCGTGGCCGCCGCACTAAGCGAACTGCTCTGGACGGAGGATGAAAACGAGACGAAGCCGACGCTCGACGCACAGGAATGCTTATCGCGCATTGCTGTGCTGACGTCCAATTCGATTGCGTTGCTCAACTGCATCGAGCCGGGCATGGCATGCTATGAGCGGTTTCATGGGGCGGATCCAGTGGAGAGGGCGGTTTTGCCGGAGGATGATACACCGGCGAGTGGACTAGAGGTGTCCGGTACACCCCGGATGCACCCGCTGGCATCATCCACGCCGATACCATCGACAAGCGGCCAGCCGGGTACTGTCCGTGGGCCCATTATTTCTTCCCGCACGCCAGCCTCCGTCCTGCGGCATGTTCGGAGCAAGCCCCGGAAGGGTGCATTCAAGAGAAATATCATGTAGAGTGAGTGGTTGGTTGCGCATTATTACATACTTACGTTCCTGTTGAATAATTTAAAGAACTTAAATACACTTCCAATGAACTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCAAAGGTGCC]
consensusID : consensus_1938#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 696 fasta sequence
[CCGCAAATAATGGCGGCGTCTAGTAAGCGTATCCAATTCAAAATAAAGCAAAAAGTATGAGTACGGAGGAAATCAGCTCATCTGGAACAGATGATGGACCACAATCGCTTGCCCGGCGGATAATACACTACTTCTACCACCGGCAAGCGATCGCCAAGGATGCGTGGGACATTGCCTTCTGGCAGGAGTTTCGCCGCCATCATCCACACGTAACACTCGAGCCGAAAGCGCTGCGGTCGTACTTTTTCCATGAAGTAATGCGCAACCCGCGCGAGTGGAGCAATCTCTCCTACGAGGTGATCCAGTACCTTAACCCGCTGTTTAACCGGATCCGCGAGGAGGTGCTCGAGTACCGGGATCTGGTCGAAGGTATCGATTACGTGTACGCGGAAGATCCGGCCGATCTACGCACGGAAGCGAACGGCACGCAGATGCCTCCTTTGTGTTTGGAGCCGGGCGGTGGGTTGGTTGCTCCTTCACGCGCCACCAAGCGCTACATAACGCCCAGTACGGCACAGATCCGCAGCTTCGTGGCCGCCGCACTAAGCGAACTGCTCTGGACGGAGGATGAAAACGAGACGAAGCCGACGCTCGACGCACAGGAATGCTTATCGCGCATTGCTGTGCTGACGTCCAATTCGATTGCGTTGCTCAACTGCATCGAGCCGGGCATGGCATGCTATGAGCGGTTTCATG]
[+] EMBL BM603269 [CCGCAAATAATGGCGGCGTCTAGTAAGCGTATCCAATTCAAAATAAAGCAAAAAGTATGAGTACGGAGGAAATCAGCTCATCTGGAACAGATGATGGACCACAATCGCTTGCCCGGCGGATAATACACTACTTCTACCACCGGCAAGCGATCGCCAAGGATGCGTGGGACATTGCCTTCTGGCAGGAGTTTCGCCGCCATCATCCACACGTAACACTCGAGCCGAAAGCGCTGCGGTCGTACTTTTTCCATGAAGTAATGCGCAACCCGCGCGAGTGGAGCAATCTCTCCTACGAGGTGATCCAGTACCTTAACCCGCTGTTTAACCGGATCCGCGAGGAGGTGCTCGAGTACCGGGATCTGGTCGAAGGTATCGATTACGTGTACGCGGAAGATCCGGCCGATCTACGCACGGAAGCGAACGGCACGCAGATGCCTCCTTTGTGTTTGGAGCCGGGCGGTGGGTTGGTTGCTCCTTCACGCGCCACCAAGCGCTACATAACGCCCAGTACGGCACAGATCCGCAGCTTCGTGGCCGCCGCACTAAGCGAACTGCTCTGGACGGAGGATGAAAACGAGACGAAGCCGACGCTCGACGCACAGGAATGCTTATCGCGCATTGCTGTGCTGACGTCCAATTCGATTGCGTTGCTCAACTGCATCGAGCCGGGCATGGCATGCTATGAGCGGTTTCATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1938#0 CGATCAAATAATGGCGGCGTCTAGTAAGCGTATCCAATTCAAAATAAAGCAAAAAGTATG 60
consensus_1938#1 -CCGCAAATAATGGCGGCGTCTAGTAAGCGTATCCAATTCAAAATAAAGCAAAAAGTATG 59
********************************************************
consensus_1938#0 AGTACGGAGGAAATCAGCTCATCTGGAACAGATGATGGACCACAATCGCTTGCCCGGCGG 120
consensus_1938#1 AGTACGGAGGAAATCAGCTCATCTGGAACAGATGATGGACCACAATCGCTTGCCCGGCGG 119
************************************************************
consensus_1938#0 ATAATACACTACTTCTACCACCGGCAAGCGATCGCCAAGGATGCGTGGGACATTGCCTTC 180
consensus_1938#1 ATAATACACTACTTCTACCACCGGCAAGCGATCGCCAAGGATGCGTGGGACATTGCCTTC 179
************************************************************
consensus_1938#0 TGGCAGGAGTTTCGCCGCCATCATCCAGACGTAACACTCGAACCGAAAGCGCTGCGGTCG 240
consensus_1938#1 TGGCAGGAGTTTCGCCGCCATCATCCACACGTAACACTCGAGCCGAAAGCGCTGCGGTCG 239
*************************** ************* ******************
consensus_1938#0 TACTTTTTCCATGAAGTAATGCGCAACCCGCGCGAGTGGAGCAATCTCTCCTACGAGGTG 300
consensus_1938#1 TACTTTTTCCATGAAGTAATGCGCAACCCGCGCGAGTGGAGCAATCTCTCCTACGAGGTG 299
************************************************************
consensus_1938#0 ATCCAGTACCTTAACCCGCTGTTTAACCGGATCCGCGAGGAGGTGCTCGAGTACCGGGAT 360
consensus_1938#1 ATCCAGTACCTTAACCCGCTGTTTAACCGGATCCGCGAGGAGGTGCTCGAGTACCGGGAT 359
************************************************************
consensus_1938#0 CTGGTCGAAGGTATCGATTAC--------------------------------------- 381
consensus_1938#1 CTGGTCGAAGGTATCGATTACGTGTACGCGGAAGATCCGGCCGATCTACGCACGGAAGCG 419
*********************
consensus_1938#0 ------------------------------------------------------------
consensus_1938#1 AACGGCACGCAGATGCCTCCTTTGTGTTTGGAGCCGGGCGGTGGGTTGGTTGCTCCTTCA 479
consensus_1938#0 ------------------ATAACGCCCAGTACGGCACAGATCCGCAGCTTCGTGGCCGCC 423
consensus_1938#1 CGCGCCACCAAGCGCTACATAACGCCCAGTACGGCACAGATCCGCAGCTTCGTGGCCGCC 539
******************************************
consensus_1938#0 GCACTAAGCGAACTGCTCTGGACGGAGGATGAAAACGAGACGAAGCCGACGCTCGACGCA 483
consensus_1938#1 GCACTAAGCGAACTGCTCTGGACGGAGGATGAAAACGAGACGAAGCCGACGCTCGACGCA 599
************************************************************
consensus_1938#0 CAGGAATGCTTATCGCGCATTGCTGTGCTGACGTCCAATTCGATTGCGTTGCTCAACTGC 543
consensus_1938#1 CAGGAATGCTTATCGCGCATTGCTGTGCTGACGTCCAATTCGATTGCGTTGCTCAACTGC 659
************************************************************
consensus_1938#0 ATCGAGCCGGGCATGGCATGCTATGAGCGGTTTCATGGGGCGGATCCAGTGGAGAGGGCG 603
consensus_1938#1 ATCGAGCCGGGCATGGCATGCTATGAGCGGTTTCATG----------------------- 696
*************************************
consensus_1938#0 GTTTTGCCGGAGGATGATACACCGGCGAGTGGACTAGAGGTGTCCGGTACACCCCGGATG 663
consensus_1938#1 ------------------------------------------------------------
consensus_1938#0 CACCCGCTGGCATCATCCACGCCGATACCATCGACAAGCGGCCAGCCGGGTACTGTCCGT 723
consensus_1938#1 ------------------------------------------------------------
consensus_1938#0 GGGCCCATTATTTCTTCCCGCACGCCAGCCTCCGTCCTGCGGCATGTTCGGAGCAAGCCC 783
consensus_1938#1 ------------------------------------------------------------
consensus_1938#0 CGGAAGGGTGCATTCAAGAGAAATATCATGTAGAGTGAGTGGTTGGTTGCGCATTATTAC 843
consensus_1938#1 ------------------------------------------------------------
consensus_1938#0 ATACTTACGTTCCTGTTGAATAATTTAAAGAACTTAAATACACTTCCAATGAACTCCAAA 903
consensus_1938#1 ------------------------------------------------------------
consensus_1938#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCAAAGGTGCC 954
consensus_1938#1 ---------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||