cluster # 1960

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 1960 cluster # 1960 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1960#0 length = 816 sequences # 1

consensus_1960#1 length = 590 sequences # 1

consensusID : consensus_1960#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 816
fasta sequence

                              [CATGGTTTGCGGTAAGGAAACGTTGTTCGCCCTCGGCACGCTGCTGCTTGCCTGCTGTCTGCTGGAGTGGGCCGAAGGTCGCGGCGCCACCGGCCCCAGCCTCGACGTTGGACAGCGGCTGCGTGCGTTGAAGGCGCGCAAAGCGTCCGCGGTCAATGGTGCAGCACCGATCAAGTTCAAGCCGTGGGAGGCGGGCCTGGGCGTCTACAAGGAGGGCGACATCATGGAGCGAGTCGTCCGCCAGCGGAACGGGGTGGCGCTGAGCGCCTTCCCGAATGCGCGCTGGCCGAACGCAGTCGTACCGTACGTGGTGACGAACACCTTCACGACAACACAGCAGGGCGTCATTCAATCGGCAATGGCACAGATCGCTGCCGCCACGTGTGTCCGGTTCGTTCCGCGCACCACGCAAACGCTGTACGTGACGATCGGTAACGGCGAGAGTGGCTGCTGGTCGTACGTTGGCCGCAGTACCCGCAACAGCGAAAATCAGGTGAACCTGCAGAGCCCGGAGTGTGTGGACATCGGTACGGTGGTGCACGAGCTGATGCACTCGATCGGTTTCTATCACGAGTTTACGCGCCCGGATCGTGACGAGTGGGTGACGATCGATCAAGGCGCACTCGCGCCCGAGTACCAGTCGGCCACGTTCTACGCCGACAACTACGGCAAGATGGCCGCCAGCGACGTGGTGCTGTACGGCCGGAAGTACGACTACNGTAGTGTGATGCACTACTCCAAGTACGCGGCAGCAGCAAGCCGTACGCGCCCCGTCATGAACAACCTGCAGCCCTGGACCGGGGACTTCGGCAACGA]

[+] EMBL BX621134             [CATGGTTTGCGGTAAGGAAACGTTGTTCGCCCTCGGCACGCTGCTGCTTGCCTGCTGTCTGCTGGAGTGGGCCGAAGGTCGCGGCGCCACCGGCCCCAGCCTCGACGTTGGACAGCGGCTGCGTGCGTTGAAGGCGCGCAAAGCGTCCGCGGTCAATGGTGCAGCACCGATCAAGTTCAAGCCGTGGGAGGCGGGCCTGGGCGTCTACAAGGAGGGCGACATCATGGAGCGAGTCGTCCGCCAGCGGAACGGGGTGGCGCTGAGCGCCTTCCCGAATGCGCGCTGGCCGAACGCAGTCGTACCGTACGTGGTGACGAACACCTTCACGACAACACAGCAGGGCGTCATTCAATCGGCAATGGCACAGATCGCTGCCGCCACGTGTGTCCGGTTCGTTCCGCGCACCACGCAAACGCTGTACGTGACGATCGGTAACGGCGAGAGTGGCTGCTGGTCGTACGTTGGCCGCAGTACCCGCAACAGCGAAAATCAGGTGAACCTGCAGAGCCCGGAGTGTGTGGACATCGGTACGGTGGTGCACGAGCTGATGCACTCGATCGGTTTCTATCACGAGTTTACGCGCCCGGATCGTGACGAGTGGGTGACGATCGATCAAGGCGCACTCGCGCCCGAGTACCAGTCGGCCACGTTCTACGCCGACAACTACGGCAAGATGGCCGCCAGCGACGTGGTGCTGTACGGCCGGAAGTACGACTACNGTAGTGTGATGCACTACTCCAAGTACGCGGCAGCAGCAAGCCGTACGCGCCCCGTCATGAACAACCTGCAGCCCTGGACCGGGGACTTCGGCAACGA]




>consensus_1960#0
CATGGTTTGCGGTAAGGAAACGTTGTTCGCCCTCGGCACGCTGCTGCTTGCCTGCTGTCT
GCTGGAGTGGGCCGAAGGTCGCGGCGCCACCGGCCCCAGCCTCGACGTTGGACAGCGGCT
GCGTGCGTTGAAGGCGCGCAAAGCGTCCGCGGTCAATGGTGCAGCACCGATCAAGTTCAA
GCCGTGGGAGGCGGGCCTGGGCGTCTACAAGGAGGGCGACATCATGGAGCGAGTCGTCCG
CCAGCGGAACGGGGTGGCGCTGAGCGCCTTCCCGAATGCGCGCTGGCCGAACGCAGTCGT
ACCGTACGTGGTGACGAACACCTTCACGACAACACAGCAGGGCGTCATTCAATCGGCAAT
GGCACAGATCGCTGCCGCCACGTGTGTCCGGTTCGTTCCGCGCACCACGCAAACGCTGTA
CGTGACGATCGGTAACGGCGAGAGTGGCTGCTGGTCGTACGTTGGCCGCAGTACCCGCAA
CAGCGAAAATCAGGTGAACCTGCAGAGCCCGGAGTGTGTGGACATCGGTACGGTGGTGCA
CGAGCTGATGCACTCGATCGGTTTCTATCACGAGTTTACGCGCCCGGATCGTGACGAGTG
GGTGACGATCGATCAAGGCGCACTCGCGCCCGAGTACCAGTCGGCCACGTTCTACGCCGA
CAACTACGGCAAGATGGCCGCCAGCGACGTGGTGCTGTACGGCCGGAAGTACGACTACNG
TAGTGTGATGCACTACTCCAAGTACGCGGCAGCAGCAAGCCGTACGCGCCCCGTCATGAA
CAACCTGCAGCCCTGGACCGGGGACTTCGGCAACGA

consensusID : consensus_1960#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 590
fasta sequence

                              [GGCCCAGGGATTTATGGAGCGAGTGTCCGCCAGCGGAACGGGGTGGTGCTGAGCGCCTTCCCGAATGCGCGCTGGCCGAACGCAGTCGTACCGTACGTGGTGACGAACACCTTCTACAACACAGCAGGGCGTCATTCAATCGGCAATGGCACAGATCGCTGCCGCCACGTGTGTCCGGTTCGTTCCGCGCACACGCAAACGCTGTACGTGACGATCGGTAACGGGCGAGAGTGGCTGCTGGTCGTACGTTGGCCGCCAGTACCCGCAACAGCGAANAATCAGGTGAACCTGCAGAGCCCGGAGTGTGTGGACATCGGTACGGTGGTGCACGAGCTGATGCACTCGATCGGTTTCTATCACGAGTTTACGCGCCCGGATCGTAGACGAGTGGGTGACGATCGATCAAGGCGCACTCGCGCCCGAGTACCAGTCGGCACGTTCTACGCCGACAACTACGGCAAGATGGCCGCCAGCGACGTGGTGCTGTACGGCCGGAAGTACGACTACGGTAGTGTGATGCACTACTCCAAGTACGCGGCANACACGCCANGCCGTACGCGCCCCGTCATGAACAACTGCAGCCCTGGACC]

[+] EMBL AL694917             [GGCCCAGGGATTTATGGAGCGAGTGTCCGCCAGCGGAACGGGGTGGTGCTGAGCGCCTTCCCGAATGCGCGCTGGCCGAACGCAGTCGTACCGTACGTGGTGACGAACACCTTCTACAACACAGCAGGGCGTCATTCAATCGGCAATGGCACAGATCGCTGCCGCCACGTGTGTCCGGTTCGTTCCGCGCACACGCAAACGCTGTACGTGACGATCGGTAACGGGCGAGAGTGGCTGCTGGTCGTACGTTGGCCGCCAGTACCCGCAACAGCGAANAATCAGGTGAACCTGCAGAGCCCGGAGTGTGTGGACATCGGTACGGTGGTGCACGAGCTGATGCACTCGATCGGTTTCTATCACGAGTTTACGCGCCCGGATCGTAGACGAGTGGGTGACGATCGATCAAGGCGCACTCGCGCCCGAGTACCAGTCGGCACGTTCTACGCCGACAACTACGGCAAGATGGCCGCCAGCGACGTGGTGCTGTACGGCCGGAAGTACGACTACGGTAGTGTGATGCACTACTCCAAGTACGCGGCANACACGCCANGCCGTACGCGCCCCGTCATGAACAACTGCAGCCCTGGACC]




>consensus_1960#1
GGCCCAGGGATTTATGGAGCGAGTGTCCGCCAGCGGAACGGGGTGGTGCTGAGCGCCTTC
CCGAATGCGCGCTGGCCGAACGCAGTCGTACCGTACGTGGTGACGAACACCTTCTACAAC
ACAGCAGGGCGTCATTCAATCGGCAATGGCACAGATCGCTGCCGCCACGTGTGTCCGGTT
CGTTCCGCGCACACGCAAACGCTGTACGTGACGATCGGTAACGGGCGAGAGTGGCTGCTG
GTCGTACGTTGGCCGCCAGTACCCGCAACAGCGAANAATCAGGTGAACCTGCAGAGCCCG
GAGTGTGTGGACATCGGTACGGTGGTGCACGAGCTGATGCACTCGATCGGTTTCTATCAC
GAGTTTACGCGCCCGGATCGTAGACGAGTGGGTGACGATCGATCAAGGCGCACTCGCGCC
CGAGTACCAGTCGGCACGTTCTACGCCGACAACTACGGCAAGATGGCCGCCAGCGACGTG
GTGCTGTACGGCCGGAAGTACGACTACGGTAGTGTGATGCACTACTCCAAGTACGCGGCA
NACACGCCANGCCGTACGCGCCCCGTCATGAACAACTGCAGCCCTGGACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1960#0      CATGGTTTGCGGTAAGGAAACGTTGTTCGCCCTCGGCACGCTGCTGCTTGCCTGCTGTCT 60
consensus_1960#1      ------------------------------------------------------------
                                                                                  

consensus_1960#0      GCTGGAGTGGGCCGAAGGTCGCGGCGCCACCGGCCCCAGCCTCGACGTTGGACAGCGGCT 120
consensus_1960#1      ------------------------------------------------------------
                                                                                  

consensus_1960#0      GCGTGCGTTGAAGGCGCGCAAAGCGTCCGCGGTCAATGGTGCAGCACCGATCAAGTTCAA 180
consensus_1960#1      ------------------------------------------------------------
                                                                                  

consensus_1960#0      GCCGTGGGAGGCGGGCCTGGGCGTCTACAAGGAGGGCGACATCATGGAGCGAGTCGTCCG 240
consensus_1960#1      ------------------------------GGCCCAGGGATTTATGGAGCGAGT-GTCCG 29
                                                    **     *   * *********** *****

consensus_1960#0      CCAGCGGAACGGGGTGGCGCTGAGCGCCTTCCCGAATGCGCGCTGGCCGAACGCAGTCGT 300
consensus_1960#1      CCAGCGGAACGGGGTGGTGCTGAGCGCCTTCCCGAATGCGCGCTGGCCGAACGCAGTCGT 89
                      ***************** ******************************************

consensus_1960#0      ACCGTACGTGGTGACGAACACCTTCACGACAACACAGCAGGGCGTCATTCAATCGGCAAT 360
consensus_1960#1      ACCGTACGTGGTGACGAACACCTTC--TACAACACAGCAGGGCGTCATTCAATCGGCAAT 147
                      *************************   ********************************

consensus_1960#0      GGCACAGATCGCTGCCGCCACGTGTGTCCGGTTCGTTCCGCGCACCACGCAAACGCTGTA 420
consensus_1960#1      GGCACAGATCGCTGCCGCCACGTGTGTCCGGTTCGTTCCGCGCAC-ACGCAAACGCTGTA 206
                      ********************************************* **************

consensus_1960#0      CGTGACGATCGGTAACGG-CGAGAGTGGCTGCTGGTCGTACGTTGGCCGC-AGTACCCGC 478
consensus_1960#1      CGTGACGATCGGTAACGGGCGAGAGTGGCTGCTGGTCGTACGTTGGCCGCCAGTACCCGC 266
                      ****************** ******************************* *********

consensus_1960#0      AACAGCGAAAA-TCAGGTGAACCTGCAGAGCCCGGAGTGTGTGGACATCGGTACGGTGGT 537
consensus_1960#1      AACAGCGAANAATCAGGTGAACCTGCAGAGCCCGGAGTGTGTGGACATCGGTACGGTGGT 326
                      ********* * ************************************************

consensus_1960#0      GCACGAGCTGATGCACTCGATCGGTTTCTATCACGAGTTTACGCGCCCGGATCGT-GACG 596
consensus_1960#1      GCACGAGCTGATGCACTCGATCGGTTTCTATCACGAGTTTACGCGCCCGGATCGTAGACG 386
                      ******************************************************* ****

consensus_1960#0      AGTGGGTGACGATCGATCAAGGCGCACTCGCGCCCGAGTACCAGTCGGCCACGTTCTACG 656
consensus_1960#1      AGTGGGTGACGATCGATCAAGGCGCACTCGCGCCCGAGTACCAGTCGGC-ACGTTCTACG 445
                      ************************************************* **********

consensus_1960#0      CCGACAACTACGGCAAGATGGCCGCCAGCGACGTGGTGCTGTACGGCCGGAAGTACGACT 716
consensus_1960#1      CCGACAACTACGGCAAGATGGCCGCCAGCGACGTGGTGCTGTACGGCCGGAAGTACGACT 505
                      ************************************************************

consensus_1960#0      ACNGTAGTGTGATGCACTACTCCAAGTACGCGGCAG---CAGCAAGCCGTACGCGCCCCG 773
consensus_1960#1      ACGGTAGTGTGATGCACTACTCCAAGTACGCGGCANACACGCCANGCCGTACGCGCCCCG 565
                      ** ********************************    *  ** ***************

consensus_1960#0      TCATGAACAACCTGCAGCCCTGGACCGGGGACTTCGGCAACGA 816
consensus_1960#1      TCATGAACAAC-TGCAGCCCTGGACC----------------- 590
                      *********** **************