cluster # 1977

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Anopheles gambiae
cluster # 1977 cluster # 1977 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1977#0 length = 544 sequences # 1

consensus_1977#1 length = 533 sequences # 1

consensusID : consensus_1977#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 544
fasta sequence

                              [GCAGAACTCGCCACGAGGTNTGATCATGCAGTAAAATGCTAAAACAGCTAAACCACATAGTAACATGTTACATAGTTACTTTGTAGTAAAATCGCTTTGCCCTGTGTGCAGGAAACAAACTAAAAAAGGAGTAGACTTTAAAAAAGATGAATCAAAAACCAAAACAACCTCAGAAAAAGAAAACAGCATAGTAGTAAAGCAAAAACAAAAATTACACTAAAACTTGCAATAACACTTAACGTGCTGTGTTATGATCGTTGCTTTGCTTGCCATAAAAAACACGTGTTTCACAAACAAACCAACAAAAACCTATACAGCCAATACACTAAAACCTTCGCGTGGCCTACACTAACTGCAATTGGAATTGAACAACGTTCCTACTGATATTAGAACAAGTGATAGTANAACTACCAAACAAAAAACCAAAACCAAAAGTAGAAAAGTATACTCGGTCTACACACGTCNAGGGAAAATCTGCNTGTTTTCACATTTATGTTATTATTCTGTNTGTTCACAACCAAGTCTCGCGAATTAGNATTCTTCG]

[+] EMBL BX469105             [GCAGAACTCGCCACGAGGTNTGATCATGCAGTAAAATGCTAAAACAGCTAAACCACATAGTAACATGTTACATAGTTACTTTGTAGTAAAATCGCTTTGCCCTGTGTGCAGGAAACAAACTAAAAAAGGAGTAGACTTTAAAAAAGATGAATCAAAAACCAAAACAACCTCAGAAAAAGAAAACAGCATAGTAGTAAAGCAAAAACAAAAATTACACTAAAACTTGCAATAACACTTAACGTGCTGTGTTATGATCGTTGCTTTGCTTGCCATAAAAAACACGTGTTTCACAAACAAACCAACAAAAACCTATACAGCCAATACACTAAAACCTTCGCGTGGCCTACACTAACTGCAATTGGAATTGAACAACGTTCCTACTGATATTAGAACAAGTGATAGTANAACTACCAAACAAAAAACCAAAACCAAAAGTAGAAAAGTATACTCGGTCTACACACGTCNAGGGAAAATCTGCNTGTTTTCACATTTATGTTATTATTCTGTNTGTTCACAACCAAGTCTCGCGAATTAGNATTCTTCG]




>consensus_1977#0
GCAGAACTCGCCACGAGGTNTGATCATGCAGTAAAATGCTAAAACAGCTAAACCACATAG
TAACATGTTACATAGTTACTTTGTAGTAAAATCGCTTTGCCCTGTGTGCAGGAAACAAAC
TAAAAAAGGAGTAGACTTTAAAAAAGATGAATCAAAAACCAAAACAACCTCAGAAAAAGA
AAACAGCATAGTAGTAAAGCAAAAACAAAAATTACACTAAAACTTGCAATAACACTTAAC
GTGCTGTGTTATGATCGTTGCTTTGCTTGCCATAAAAAACACGTGTTTCACAAACAAACC
AACAAAAACCTATACAGCCAATACACTAAAACCTTCGCGTGGCCTACACTAACTGCAATT
GGAATTGAACAACGTTCCTACTGATATTAGAACAAGTGATAGTANAACTACCAAACAAAA
AACCAAAACCAAAAGTAGAAAAGTATACTCGGTCTACACACGTCNAGGGAAAATCTGCNT
GTTTTCACATTTATGTTATTATTCTGTNTGTTCACAACCAAGTCTCGCGAATTAGNATTC
TTCG

consensusID : consensus_1977#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 533
fasta sequence

                              [ATCCCCCCCAGGNNAATGATAGCTAAGCAGTGAANAATATATACCAAAACAAGCTTAGTAAACACTAGTAGCAGCAGCAGCACCCTTATATGCCTTACTTGTGTACTTCCTGCTAAACATACCCACTTGATGCCTTCTCGTTTGCCATGACTAACATCAACTGAATAGGTCCAAACACACTGATCGACTTTTTATTTTCCTAATAACCATACCATAAAACGGTGTTAGTGAGTGATATAGTATTTGGATCGTTTTACTATGCGATCATGCAGTAAAATGCTAAAACAGCTAAACCACATAGTAACATGTTACATAGTTACTTTGTAGTAAAATCGCTTTGCCCTGTGTGCAGAAACAAACTAAANAAGGAGTAGACTTTAAAAAAGATGAATCAAAAACCAAAACAACCTCAGAAAAAGAAACACAGCATAGTAGTAAAGCAAAAACAAAAATTACACTAAAACTTGCAATAACACTTAACGTGCTGTGTTATGATCGTTGCTTTGCTTGCCATAAAAAACACGTGTTTCACA]

[+] EMBL AL932175             [ATCCCCCCCAGGNNAATGATAGCTAAGCAGTGAANAATATATACCAAAACAAGCTTAGTAAACACTAGTAGCAGCAGCAGCACCCTTATATGCCTTACTTGTGTACTTCCTGCTAAACATACCCACTTGATGCCTTCTCGTTTGCCATGACTAACATCAACTGAATAGGTCCAAACACACTGATCGACTTTTTATTTTCCTAATAACCATACCATAAAACGGTGTTAGTGAGTGATATAGTATTTGGATCGTTTTACTATGCGATCATGCAGTAAAATGCTAAAACAGCTAAACCACATAGTAACATGTTACATAGTTACTTTGTAGTAAAATCGCTTTGCCCTGTGTGCAGAAACAAACTAAANAAGGAGTAGACTTTAAAAAAGATGAATCAAAAACCAAAACAACCTCAGAAAAAGAAACACAGCATAGTAGTAAAGCAAAAACAAAAATTACACTAAAACTTGCAATAACACTTAACGTGCTGTGTTATGATCGTTGCTTTGCTTGCCATAAAAAACACGTGTTTCACA]




>consensus_1977#1
ATCCCCCCCAGGNNAATGATAGCTAAGCAGTGAANAATATATACCAAAACAAGCTTAGTA
AACACTAGTAGCAGCAGCAGCACCCTTATATGCCTTACTTGTGTACTTCCTGCTAAACAT
ACCCACTTGATGCCTTCTCGTTTGCCATGACTAACATCAACTGAATAGGTCCAAACACAC
TGATCGACTTTTTATTTTCCTAATAACCATACCATAAAACGGTGTTAGTGAGTGATATAG
TATTTGGATCGTTTTACTATGCGATCATGCAGTAAAATGCTAAAACAGCTAAACCACATA
GTAACATGTTACATAGTTACTTTGTAGTAAAATCGCTTTGCCCTGTGTGCAGAAACAAAC
TAAANAAGGAGTAGACTTTAAAAAAGATGAATCAAAAACCAAAACAACCTCAGAAAAAGA
AACACAGCATAGTAGTAAAGCAAAAACAAAAATTACACTAAAACTTGCAATAACACTTAA
CGTGCTGTGTTATGATCGTTGCTTTGCTTGCCATAAAAAACACGTGTTTCACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1977#0      ------------------------------------------------------------
consensus_1977#1      ATCCCCCCCAGGNNAATGATAGCTAAGCAGTGAANAATATATACCAAAACAAGCTTAGTA 60
                                                                                  

consensus_1977#0      ------------------------------------------------------------
consensus_1977#1      AACACTAGTAGCAGCAGCAGCACCCTTATATGCCTTACTTGTGTACTTCCTGCTAAACAT 120
                                                                                  

consensus_1977#0      ------------------------------------------------------------
consensus_1977#1      ACCCACTTGATGCCTTCTCGTTTGCCATGACTAACATCAACTGAATAGGTCCAAACACAC 180
                                                                                  

consensus_1977#0      ------------------------------------------------------------
consensus_1977#1      TGATCGACTTTTTATTTTCCTAATAACCATACCATAAAACGGTGTTAGTGAGTGATATAG 240
                                                                                  

consensus_1977#0      -GCAGAACTCGCCACGAGGTNTGATCATGCAGTAAAATGCTAAAACAGCTAAACCACATA 59
consensus_1977#1      TATTTGGATCGTTTTACTATGCGATCATGCAGTAAAATGCTAAAACAGCTAAACCACATA 300
                              ***        *  **************************************

consensus_1977#0      GTAACATGTTACATAGTTACTTTGTAGTAAAATCGCTTTGCCCTGTGTGCAGGAAACAAA 119
consensus_1977#1      GTAACATGTTACATAGTTACTTTGTAGTAAAATCGCTTTGCCCTGTGTGCAG-AAACAAA 359
                      **************************************************** *******

consensus_1977#0      CTAAAAAAGGAGTAGACTTTAAAAAAGATGAATCAAAAACCAAAACAACCTCAGAAAAAG 179
consensus_1977#1      CTAAANAAGGAGTAGACTTTAAAAAAGATGAATCAAAAACCAAAACAACCTCAGAAAAAG 419
                      ***** ******************************************************

consensus_1977#0      AAA-ACAGCATAGTAGTAAAGCAAAAACAAAAATTACACTAAAACTTGCAATAACACTTA 238
consensus_1977#1      AAACACAGCATAGTAGTAAAGCAAAAACAAAAATTACACTAAAACTTGCAATAACACTTA 479
                      *** ********************************************************

consensus_1977#0      ACGTGCTGTGTTATGATCGTTGCTTTGCTTGCCATAAAAAACACGTGTTTCACAAACAAA 298
consensus_1977#1      ACGTGCTGTGTTATGATCGTTGCTTTGCTTGCCATAAAAAACACGTGTTTCACA------ 533
                      ******************************************************      

consensus_1977#0      CCAACAAAAACCTATACAGCCAATACACTAAAACCTTCGCGTGGCCTACACTAACTGCAA 358
consensus_1977#1      ------------------------------------------------------------
                                                                                  

consensus_1977#0      TTGGAATTGAACAACGTTCCTACTGATATTAGAACAAGTGATAGTANAACTACCAAACAA 418
consensus_1977#1      ------------------------------------------------------------
                                                                                  

consensus_1977#0      AAAACCAAAACCAAAAGTAGAAAAGTATACTCGGTCTACACACGTCNAGGGAAAATCTGC 478
consensus_1977#1      ------------------------------------------------------------
                                                                                  

consensus_1977#0      NTGTTTTCACATTTATGTTATTATTCTGTNTGTTCACAACCAAGTCTCGCGAATTAGNAT 538
consensus_1977#1      ------------------------------------------------------------
                                                                                  

consensus_1977#0      TCTTCG 544
consensus_1977#1      ------