cluster # 1981

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Anopheles gambiae
cluster # 1981 cluster # 1981 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1981#0 length = 686 sequences # 1

consensus_1981#1 length = 607 sequences # 1

consensusID : consensus_1981#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 686
fasta sequence

                              [CCGGGACCTTCGGCCAGAGTCGCCCAATCGTCCTGTGTCACCGCGTAGCATATCCTTTTTTGCGGTGCCGTGAAATGATAAGTTTTGAAATAGCACGAAAACCGCATTCCCCATTGCCAGTGATAAAGTAAACCATGGTTGGCCTAGCAACGGACGATATGGTCGTGCGGACGCAACAGCACCAGCAGCCGTCGCCAAACCGACATTTAGGCTGTGGCCAGAGTGAGTTTCCCGTGTTTATCCCGCCGAGAAAACGGCAAACAGGAAAGAAGACAAACCATGGCAATCATATCGATCACATCGTGAACATACAGGGTACCCGTAAAGAGTGGGATCTAACACCGGAACGAGAAGACTGTCGAAGAAACAAGCGCTGGAACAGTGAGGAGATCATCGAAATCAGCTCCACCGGCAAAGGGGGCCCGATCGCGAACGGCACCAACGAGGACGAGGACGATCTGAACGAGCTGCAGCACTTTCATCCGCTCAAGGACAGCTCCACCGTGACGCCGAGCAGCATCTCGGAGAGCAGCCTCGACCGGAAGTCGAGCAAGTCGGCCGAACTGCCTACCGGCGGCAGTGGCAAGCGCTCCAAAAAGCGGGTCAACATTCGCACCGATCTGGACGAAATAGGACGGCGTCGGTCACCGTCGGCCATCTGCAACTACGAGGATCTGGAGTCGGGT]

[+] EMBL BM602720             [CCGGGACCTTCGGCCAGAGTCGCCCAATCGTCCTGTGTCACCGCGTAGCATATCCTTTTTTGCGGTGCCGTGAAATGATAAGTTTTGAAATAGCACGAAAACCGCATTCCCCATTGCCAGTGATAAAGTAAACCATGGTTGGCCTAGCAACGGACGATATGGTCGTGCGGACGCAACAGCACCAGCAGCCGTCGCCAAACCGACATTTAGGCTGTGGCCAGAGTGAGTTTCCCGTGTTTATCCCGCCGAGAAAACGGCAAACAGGAAAGAAGACAAACCATGGCAATCATATCGATCACATCGTGAACATACAGGGTACCCGTAAAGAGTGGGATCTAACACCGGAACGAGAAGACTGTCGAAGAAACAAGCGCTGGAACAGTGAGGAGATCATCGAAATCAGCTCCACCGGCAAAGGGGGCCCGATCGCGAACGGCACCAACGAGGACGAGGACGATCTGAACGAGCTGCAGCACTTTCATCCGCTCAAGGACAGCTCCACCGTGACGCCGAGCAGCATCTCGGAGAGCAGCCTCGACCGGAAGTCGAGCAAGTCGGCCGAACTGCCTACCGGCGGCAGTGGCAAGCGCTCCAAAAAGCGGGTCAACATTCGCACCGATCTGGACGAAATAGGACGGCGTCGGTCACCGTCGGCCATCTGCAACTACGAGGATCTGGAGTCGGGT]




>consensus_1981#0
CCGGGACCTTCGGCCAGAGTCGCCCAATCGTCCTGTGTCACCGCGTAGCATATCCTTTTT
TGCGGTGCCGTGAAATGATAAGTTTTGAAATAGCACGAAAACCGCATTCCCCATTGCCAG
TGATAAAGTAAACCATGGTTGGCCTAGCAACGGACGATATGGTCGTGCGGACGCAACAGC
ACCAGCAGCCGTCGCCAAACCGACATTTAGGCTGTGGCCAGAGTGAGTTTCCCGTGTTTA
TCCCGCCGAGAAAACGGCAAACAGGAAAGAAGACAAACCATGGCAATCATATCGATCACA
TCGTGAACATACAGGGTACCCGTAAAGAGTGGGATCTAACACCGGAACGAGAAGACTGTC
GAAGAAACAAGCGCTGGAACAGTGAGGAGATCATCGAAATCAGCTCCACCGGCAAAGGGG
GCCCGATCGCGAACGGCACCAACGAGGACGAGGACGATCTGAACGAGCTGCAGCACTTTC
ATCCGCTCAAGGACAGCTCCACCGTGACGCCGAGCAGCATCTCGGAGAGCAGCCTCGACC
GGAAGTCGAGCAAGTCGGCCGAACTGCCTACCGGCGGCAGTGGCAAGCGCTCCAAAAAGC
GGGTCAACATTCGCACCGATCTGGACGAAATAGGACGGCGTCGGTCACCGTCGGCCATCT
GCAACTACGAGGATCTGGAGTCGGGT

consensusID : consensus_1981#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 607
fasta sequence

                              [CCGCACATACAACAGTAAATTGTCCTTCCTTGCAGGGTACCCGTAAAGAGTGGGATCTAACACCGGAACGAGAAGACTGTCGAAGAAACAAGCGCTGGAACAGTGAGGAGATCATCGAAATCAGCTCCACCGGCAAAGGGGGCCCGATCGCGAACGGCACCAACGAGGACGAGGACGATCTGAACGAGCTGCAGCACTTTCATCCGCTCAAGGACAGCTCCACCGTGACGCCGAGCAGCATCTCGGAGAGCAGCCTCGACCGGAAGTCGAGCAAGTCGGCCGAACTGCTTACCGGCGGCAGTGGCAAGCGCTCCAAAAAGCGGGTCAACATTCGCACCGATCTGGACGAAATAGGACGGCGTCGGTCACCGTCGGCCATCTGCAACTACGAGGATCTGGAGTGAGACGAGCGTACTGAACGCCGAGCTCGACCAGCACAGCCTGGAGCGGTACAACACGAACCGCTCGTACGCTTCCTCCACCGATAACTATCTGACGATGACGGGCACGATCAAGCGTGGCCGCAAGAAGGGGCAATCGATCGATGTGCAGCTAAACATTTCGCGCGAAGAGCTGGAGCAAATCAGCAAACAGGCGCTGGCCGTAC]

[+] EMBL BM602611             [CCGCACATACAACAGTAAATTGTCCTTCCTTGCAGGGTACCCGTAAAGAGTGGGATCTAACACCGGAACGAGAAGACTGTCGAAGAAACAAGCGCTGGAACAGTGAGGAGATCATCGAAATCAGCTCCACCGGCAAAGGGGGCCCGATCGCGAACGGCACCAACGAGGACGAGGACGATCTGAACGAGCTGCAGCACTTTCATCCGCTCAAGGACAGCTCCACCGTGACGCCGAGCAGCATCTCGGAGAGCAGCCTCGACCGGAAGTCGAGCAAGTCGGCCGAACTGCTTACCGGCGGCAGTGGCAAGCGCTCCAAAAAGCGGGTCAACATTCGCACCGATCTGGACGAAATAGGACGGCGTCGGTCACCGTCGGCCATCTGCAACTACGAGGATCTGGAGTGAGACGAGCGTACTGAACGCCGAGCTCGACCAGCACAGCCTGGAGCGGTACAACACGAACCGCTCGTACGCTTCCTCCACCGATAACTATCTGACGATGACGGGCACGATCAAGCGTGGCCGCAAGAAGGGGCAATCGATCGATGTGCAGCTAAACATTTCGCGCGAAGAGCTGGAGCAAATCAGCAAACAGGCGCTGGCCGTAC]




>consensus_1981#1
CCGCACATACAACAGTAAATTGTCCTTCCTTGCAGGGTACCCGTAAAGAGTGGGATCTAA
CACCGGAACGAGAAGACTGTCGAAGAAACAAGCGCTGGAACAGTGAGGAGATCATCGAAA
TCAGCTCCACCGGCAAAGGGGGCCCGATCGCGAACGGCACCAACGAGGACGAGGACGATC
TGAACGAGCTGCAGCACTTTCATCCGCTCAAGGACAGCTCCACCGTGACGCCGAGCAGCA
TCTCGGAGAGCAGCCTCGACCGGAAGTCGAGCAAGTCGGCCGAACTGCTTACCGGCGGCA
GTGGCAAGCGCTCCAAAAAGCGGGTCAACATTCGCACCGATCTGGACGAAATAGGACGGC
GTCGGTCACCGTCGGCCATCTGCAACTACGAGGATCTGGAGTGAGACGAGCGTACTGAAC
GCCGAGCTCGACCAGCACAGCCTGGAGCGGTACAACACGAACCGCTCGTACGCTTCCTCC
ACCGATAACTATCTGACGATGACGGGCACGATCAAGCGTGGCCGCAAGAAGGGGCAATCG
ATCGATGTGCAGCTAAACATTTCGCGCGAAGAGCTGGAGCAAATCAGCAAACAGGCGCTG
GCCGTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1981#0      CCGGGACCTTCGGCCAGAGTCGCCCAATCGTCCTGTGTCACCGCGTAGCATATCCTTTTT 60
consensus_1981#1      ------------------------------------------------------------
                                                                                  

consensus_1981#0      TGCGGTGCCGTGAAATGATAAGTTTTGAAATAGCACGAAAACCGCATTCCCCATTGCCAG 120
consensus_1981#1      ------------------------------------------------------------
                                                                                  

consensus_1981#0      TGATAAAGTAAACCATGGTTGGCCTAGCAACGGACGATATGGTCGTGCGGACGCAACAGC 180
consensus_1981#1      ------------------------------------------------------------
                                                                                  

consensus_1981#0      ACCAGCAGCCGTCGCCAAACCGACATTTAGGCTGTGGCCAGAGTGAGTTTCCCGTGTTTA 240
consensus_1981#1      ------------------------------------------------------------
                                                                                  

consensus_1981#0      TCCCGCCGAGAAAACGGCAAACAGGAAAGAAGACAAACCATGGCAATCATATCGATCACA 300
consensus_1981#1      ----------------------------------------CCGCACATACAACAGT-AAA 19
                                                                ***   * * *  * * *

consensus_1981#0      TCGTGAA--CATACAGGGTACCCGTAAAGAGTGGGATCTAACACCGGAACGAGAAGACTG 358
consensus_1981#1      TTGTCCTTCCTTGCAGGGTACCCGTAAAGAGTGGGATCTAACACCGGAACGAGAAGACTG 79
                      * **     * * ***********************************************

consensus_1981#0      TCGAAGAAACAAGCGCTGGAACAGTGAGGAGATCATCGAAATCAGCTCCACCGGCAAAGG 418
consensus_1981#1      TCGAAGAAACAAGCGCTGGAACAGTGAGGAGATCATCGAAATCAGCTCCACCGGCAAAGG 139
                      ************************************************************

consensus_1981#0      GGGCCCGATCGCGAACGGCACCAACGAGGACGAGGACGATCTGAACGAGCTGCAGCACTT 478
consensus_1981#1      GGGCCCGATCGCGAACGGCACCAACGAGGACGAGGACGATCTGAACGAGCTGCAGCACTT 199
                      ************************************************************

consensus_1981#0      TCATCCGCTCAAGGACAGCTCCACCGTGACGCCGAGCAGCATCTCGGAGAGCAGCCTCGA 538
consensus_1981#1      TCATCCGCTCAAGGACAGCTCCACCGTGACGCCGAGCAGCATCTCGGAGAGCAGCCTCGA 259
                      ************************************************************

consensus_1981#0      CCGGAAGTCGAGCAAGTCGGCCGAACTGCCTACCGGCGGCAGTGGCAAGCGCTCCAAAAA 598
consensus_1981#1      CCGGAAGTCGAGCAAGTCGGCCGAACTGCTTACCGGCGGCAGTGGCAAGCGCTCCAAAAA 319
                      ***************************** ******************************

consensus_1981#0      GCGGGTCAACATTCGCACCGATCTGGACGAAATAGGACGGCGTCGGTCACCGTCGGCCAT 658
consensus_1981#1      GCGGGTCAACATTCGCACCGATCTGGACGAAATAGGACGGCGTCGGTCACCGTCGGCCAT 379
                      ************************************************************

consensus_1981#0      CTGCAACTACGAGGATCTGGAGTCGGGT-------------------------------- 686
consensus_1981#1      CTGCAACTACGAGGATCTGGAGTGAGACGAGCGTACTGAACGCCGAGCTCGACCAGCACA 439
                      ***********************  *                                  

consensus_1981#0      ------------------------------------------------------------
consensus_1981#1      GCCTGGAGCGGTACAACACGAACCGCTCGTACGCTTCCTCCACCGATAACTATCTGACGA 499
                                                                                  

consensus_1981#0      ------------------------------------------------------------
consensus_1981#1      TGACGGGCACGATCAAGCGTGGCCGCAAGAAGGGGCAATCGATCGATGTGCAGCTAAACA 559
                                                                                  

consensus_1981#0      ------------------------------------------------
consensus_1981#1      TTTCGCGCGAAGAGCTGGAGCAAATCAGCAAACAGGCGCTGGCCGTAC 607