cluster # 1994

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Anopheles gambiae
cluster # 1994 cluster # 1994 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1994#0 length = 722 sequences # 1

consensus_1994#1 length = 649 sequences # 1

consensusID : consensus_1994#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 722
fasta sequence

                              [CCGGTGGAGGCGCCGGTGCCGGTGGCATGGGCAGCAGTCCTTCCTCGCCGCTGCTGCTGCTCCGGAAGGCACACCACGACGGTTCGGAAACGGAAACGCAGTATAAACATCTGCACGGCAACACTAGTCCAATTGTTCTTCAGCGATTCTACCACCAACAGAATCAACTGAAAGAGCAACAAAGAGAGGCGCTGCAGCAGCATCATCACCACCAACAGCAGCAGCAGCAGCAGCAGCAGCATCAACAGCAACAGCAGCAAGTGATTTACGGGTACTCCTCACCATCGCCGATACCCTCGGCAAGCGAAGCGTCACCCCGGCCTATCCGCTACAGTCCGCTACCCTCCCATCGGACCGTACATCATGGGGTGCATCCGGTGCTGAGCAACACCGGCGGCACCACCACCCTTCACCAAAGCGCCATCCCGCTCTACAAGCATCACGAACCGGCGGCTCCGCTAGCACCATCGCAACCTTCCGGGATTCCGGTGTACCAGCAGCAAGCCACCGCCAGCCCCAAGCACAAATCCTCCTCCTCCTTCTTTAACACGTTCAGCCGTGGCATGAAGAGCGGTGGTCGGGGCGATAAGGTGATCGATCGGGGTGGCACCGCCGCACCACCGACCATGATGAGTGGTGCTGCCGATCGGTCGCTGTATGCCGGCACTACCACCACCAACACCAGTCACCAAACAGCACTGTACCAACATCATCATCAGGGG]

[+] EMBL BM602428             [CCGGTGGAGGCGCCGGTGCCGGTGGCATGGGCAGCAGTCCTTCCTCGCCGCTGCTGCTGCTCCGGAAGGCACACCACGACGGTTCGGAAACGGAAACGCAGTATAAACATCTGCACGGCAACACTAGTCCAATTGTTCTTCAGCGATTCTACCACCAACAGAATCAACTGAAAGAGCAACAAAGAGAGGCGCTGCAGCAGCATCATCACCACCAACAGCAGCAGCAGCAGCAGCAGCAGCATCAACAGCAACAGCAGCAAGTGATTTACGGGTACTCCTCACCATCGCCGATACCCTCGGCAAGCGAAGCGTCACCCCGGCCTATCCGCTACAGTCCGCTACCCTCCCATCGGACCGTACATCATGGGGTGCATCCGGTGCTGAGCAACACCGGCGGCACCACCACCCTTCACCAAAGCGCCATCCCGCTCTACAAGCATCACGAACCGGCGGCTCCGCTAGCACCATCGCAACCTTCCGGGATTCCGGTGTACCAGCAGCAAGCCACCGCCAGCCCCAAGCACAAATCCTCCTCCTCCTTCTTTAACACGTTCAGCCGTGGCATGAAGAGCGGTGGTCGGGGCGATAAGGTGATCGATCGGGGTGGCACCGCCGCACCACCGACCATGATGAGTGGTGCTGCCGATCGGTCGCTGTATGCCGGCACTACCACCACCAACACCAGTCACCAAACAGCACTGTACCAACATCATCATCAGGGG]




>consensus_1994#0
CCGGTGGAGGCGCCGGTGCCGGTGGCATGGGCAGCAGTCCTTCCTCGCCGCTGCTGCTGC
TCCGGAAGGCACACCACGACGGTTCGGAAACGGAAACGCAGTATAAACATCTGCACGGCA
ACACTAGTCCAATTGTTCTTCAGCGATTCTACCACCAACAGAATCAACTGAAAGAGCAAC
AAAGAGAGGCGCTGCAGCAGCATCATCACCACCAACAGCAGCAGCAGCAGCAGCAGCAGC
ATCAACAGCAACAGCAGCAAGTGATTTACGGGTACTCCTCACCATCGCCGATACCCTCGG
CAAGCGAAGCGTCACCCCGGCCTATCCGCTACAGTCCGCTACCCTCCCATCGGACCGTAC
ATCATGGGGTGCATCCGGTGCTGAGCAACACCGGCGGCACCACCACCCTTCACCAAAGCG
CCATCCCGCTCTACAAGCATCACGAACCGGCGGCTCCGCTAGCACCATCGCAACCTTCCG
GGATTCCGGTGTACCAGCAGCAAGCCACCGCCAGCCCCAAGCACAAATCCTCCTCCTCCT
TCTTTAACACGTTCAGCCGTGGCATGAAGAGCGGTGGTCGGGGCGATAAGGTGATCGATC
GGGGTGGCACCGCCGCACCACCGACCATGATGAGTGGTGCTGCCGATCGGTCGCTGTATG
CCGGCACTACCACCACCAACACCAGTCACCAAACAGCACTGTACCAACATCATCATCAGG
GG

consensusID : consensus_1994#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 649
fasta sequence

                              [CGACCCACGCGTCCGCGGAAACGCAGTATAAACATCTGCACGGCAACACTAGTCCAATTGTTCTTCAGCGATTCTACCACCAACAGAATCAACTGAAAGAGCAACAAAGAGAGGCGCTGCAGCAGCATCATCACCACCACCAACAGCAGCAGCAGCAGCAGCAGCAGCATCAACAGCAACAGCAGCAAGTGATTTACGGGTACTCCTCACCATCGCCGATACCCTCGGCAAGCGAAGCGTCACCCCGGCCAATCCGCTACAGTCCGCTACCCTCCCATCGGACCGTACATCATGGGGTGCATCCGGTGCTGAGCAACACCGGCGGCACCACCACCACCCTTCACCAAAGCGCCATCCCGCTCTACAAGCATCACGAACCGGCGGCTCCGCTAGGACCATCGCAACCTTCCGGGATTCCGGTGTACCAGCAGCAAGCCACCGCCAGCCCCAAGCACAAATCCTCCTCCTCCTTCTTTAACACGTTCAGCCGTGGCATGAAGAGCGGTGGTCGGGGCGATAAGGTGATCGATCGGGGTGGCACCGCCGCACCACCGACCATGATGAGTGGTGCTGCCGATCGGTCGCTGTATGCCGGCACTACCACCACCAACACCACTCACCAAACAGCACTGTACCAACATCATCATCA]

[+] EMBL BM654710             [CGACCCACGCGTCCGCGGAAACGCAGTATAAACATCTGCACGGCAACACTAGTCCAATTGTTCTTCAGCGATTCTACCACCAACAGAATCAACTGAAAGAGCAACAAAGAGAGGCGCTGCAGCAGCATCATCACCACCACCAACAGCAGCAGCAGCAGCAGCAGCAGCATCAACAGCAACAGCAGCAAGTGATTTACGGGTACTCCTCACCATCGCCGATACCCTCGGCAAGCGAAGCGTCACCCCGGCCAATCCGCTACAGTCCGCTACCCTCCCATCGGACCGTACATCATGGGGTGCATCCGGTGCTGAGCAACACCGGCGGCACCACCACCACCCTTCACCAAAGCGCCATCCCGCTCTACAAGCATCACGAACCGGCGGCTCCGCTAGGACCATCGCAACCTTCCGGGATTCCGGTGTACCAGCAGCAAGCCACCGCCAGCCCCAAGCACAAATCCTCCTCCTCCTTCTTTAACACGTTCAGCCGTGGCATGAAGAGCGGTGGTCGGGGCGATAAGGTGATCGATCGGGGTGGCACCGCCGCACCACCGACCATGATGAGTGGTGCTGCCGATCGGTCGCTGTATGCCGGCACTACCACCACCAACACCACTCACCAAACAGCACTGTACCAACATCATCATCA]




>consensus_1994#1
CGACCCACGCGTCCGCGGAAACGCAGTATAAACATCTGCACGGCAACACTAGTCCAATTG
TTCTTCAGCGATTCTACCACCAACAGAATCAACTGAAAGAGCAACAAAGAGAGGCGCTGC
AGCAGCATCATCACCACCACCAACAGCAGCAGCAGCAGCAGCAGCAGCATCAACAGCAAC
AGCAGCAAGTGATTTACGGGTACTCCTCACCATCGCCGATACCCTCGGCAAGCGAAGCGT
CACCCCGGCCAATCCGCTACAGTCCGCTACCCTCCCATCGGACCGTACATCATGGGGTGC
ATCCGGTGCTGAGCAACACCGGCGGCACCACCACCACCCTTCACCAAAGCGCCATCCCGC
TCTACAAGCATCACGAACCGGCGGCTCCGCTAGGACCATCGCAACCTTCCGGGATTCCGG
TGTACCAGCAGCAAGCCACCGCCAGCCCCAAGCACAAATCCTCCTCCTCCTTCTTTAACA
CGTTCAGCCGTGGCATGAAGAGCGGTGGTCGGGGCGATAAGGTGATCGATCGGGGTGGCA
CCGCCGCACCACCGACCATGATGAGTGGTGCTGCCGATCGGTCGCTGTATGCCGGCACTA
CCACCACCAACACCACTCACCAAACAGCACTGTACCAACATCATCATCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1994#0      CCGGTGGAGGCGCCGGTGCCGGTGGCATGGGCAGCAGTCCTTCCTCGCCGCTGCTGCTGC 60
consensus_1994#1      ------------------------------------------------------------
                                                                                  

consensus_1994#0      TCCGGAAGGCACACCACGACGGTTCGGAAACGGAAACGCAGTATAAACATCTGCACGGCA 120
consensus_1994#1      ---------CGACCCACGC--GTCCG----CGGAAACGCAGTATAAACATCTGCACGGCA 45
                               *   *****   ** **    ******************************

consensus_1994#0      ACACTAGTCCAATTGTTCTTCAGCGATTCTACCACCAACAGAATCAACTGAAAGAGCAAC 180
consensus_1994#1      ACACTAGTCCAATTGTTCTTCAGCGATTCTACCACCAACAGAATCAACTGAAAGAGCAAC 105
                      ************************************************************

consensus_1994#0      AAAGAGAGGCGCTGCAGCAGCATCATCACCACCA---ACAGCAGCAGCAGCAGCAGCAGC 237
consensus_1994#1      AAAGAGAGGCGCTGCAGCAGCATCATCACCACCACCAACAGCAGCAGCAGCAGCAGCAGC 165
                      **********************************   ***********************

consensus_1994#0      AGCATCAACAGCAACAGCAGCAAGTGATTTACGGGTACTCCTCACCATCGCCGATACCCT 297
consensus_1994#1      AGCATCAACAGCAACAGCAGCAAGTGATTTACGGGTACTCCTCACCATCGCCGATACCCT 225
                      ************************************************************

consensus_1994#0      CGGCAAGCGAAGCGTCACCCCGGCCTATCCGCTACAGTCCGCTACCCTCCCATCGGACCG 357
consensus_1994#1      CGGCAAGCGAAGCGTCACCCCGGCCAATCCGCTACAGTCCGCTACCCTCCCATCGGACCG 285
                      ************************* **********************************

consensus_1994#0      TACATCATGGGGTGCATCCGGTGCTGAGCAACACCGGCGGCACCACCACC---CTTCACC 414
consensus_1994#1      TACATCATGGGGTGCATCCGGTGCTGAGCAACACCGGCGGCACCACCACCACCCTTCACC 345
                      **************************************************   *******

consensus_1994#0      AAAGCGCCATCCCGCTCTACAAGCATCACGAACCGGCGGCTCCGCTAGCACCATCGCAAC 474
consensus_1994#1      AAAGCGCCATCCCGCTCTACAAGCATCACGAACCGGCGGCTCCGCTAGGACCATCGCAAC 405
                      ************************************************ ***********

consensus_1994#0      CTTCCGGGATTCCGGTGTACCAGCAGCAAGCCACCGCCAGCCCCAAGCACAAATCCTCCT 534
consensus_1994#1      CTTCCGGGATTCCGGTGTACCAGCAGCAAGCCACCGCCAGCCCCAAGCACAAATCCTCCT 465
                      ************************************************************

consensus_1994#0      CCTCCTTCTTTAACACGTTCAGCCGTGGCATGAAGAGCGGTGGTCGGGGCGATAAGGTGA 594
consensus_1994#1      CCTCCTTCTTTAACACGTTCAGCCGTGGCATGAAGAGCGGTGGTCGGGGCGATAAGGTGA 525
                      ************************************************************

consensus_1994#0      TCGATCGGGGTGGCACCGCCGCACCACCGACCATGATGAGTGGTGCTGCCGATCGGTCGC 654
consensus_1994#1      TCGATCGGGGTGGCACCGCCGCACCACCGACCATGATGAGTGGTGCTGCCGATCGGTCGC 585
                      ************************************************************

consensus_1994#0      TGTATGCCGGCACTACCACCACCAACACCAGTCACCAAACAGCACTGTACCAACATCATC 714
consensus_1994#1      TGTATGCCGGCACTACCACCACCAACACCACTCACCAAACAGCACTGTACCAACATCATC 645
                      ****************************** *****************************

consensus_1994#0      ATCAGGGG 722
consensus_1994#1      ATCA---- 649
                      ****