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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2003#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 834 fasta sequence
[AGATCCCGCAGGTTAACGCTAATTGATATNGGTCNCAATCTTGTATTGAGCATCGGTGCTAAGTTCTCCGAAGAGCCCAAGCATTAATTCATGGTTTGGGATTCAACCAAGGTAGGTACGTATGACTACCGTTGATNTTGGCACTGATGATGATAAATTATCAGTTATATCATTACAACTACAGTNTTTCATATCAAAAGTTCCACCACCAAACGTTATACAATATTCTGATGGCAAGTAGTNGTCACGTNGAAGCCCGAGTTATACCTTACTAANATTGGGTTAACGTTGGGACTGGGCCATCCCCAAAGAGCAACGATTGGGAATTTCGGTCGCCTNCTCGGGACTNAACCTTCCAAAAAAACAAAAATACTTACTCNCANTTCTCGCACACAGGGCCTNAAAGAATACTACCCCTATGGATNGGCACCCTACCAACAAAAANACTACACACTATTCAANGCCACAGCCTTGTCACCCCTTAGGAATACTAAATTCCCCAACGCACATNGCTACCCCANACTCNGTCNCACACCCCCTTCTCAAACNGTTACACCACTAACAAGGTTTAAAACAGAAANCATTCCAAATAAACTACCCTCNTATGGCCCACCTTATTCNTAACGGCCCTATGACACACCCAACANACCGCAACTATNAAACCACCANACAGAAAANTACACCACATATATAAGAAAAACATTCAAACCCTACAACTATACCCCTTACCCAAGGGAGCATTTACCTCAGGAGAAAATGACTACCCAACCCATANCACAGCAACAANTTTGTTCCTCCAACTTCACATTTCCAACATCCCAAACACTCNTNGNN]
[+] EMBL AL695149 [AGATCCCGCAGGTTAACGCTAATTGATATNGGTCNCAATCTTGTATTGAGCATCGGTGCTAAGTTCTCCGAAGAGCCCAAGCATTAATTCATGGTTTGGGATTCAACCAAGGTAGGTACGTATGACTACCGTTGATNTTGGCACTGATGATGATAAATTATCAGTTATATCATTACAACTACAGTNTTTCATATCAAAAGTTCCACCACCAAACGTTATACAATATTCTGATGGCAAGTAGTNGTCACGTNGAAGCCCGAGTTATACCTTACTAANATTGGGTTAACGTTGGGACTGGGCCATCCCCAAAGAGCAACGATTGGGAATTTCGGTCGCCTNCTCGGGACTNAACCTTCCAAAAAAACAAAAATACTTACTCNCANTTCTCGCACACAGGGCCTNAAAGAATACTACCCCTATGGATNGGCACCCTACCAACAAAAANACTACACACTATTCAANGCCACAGCCTTGTCACCCCTTAGGAATACTAAATTCCCCAACGCACATNGCTACCCCANACTCNGTCNCACACCCCCTTCTCAAACNGTTACACCACTAACAAGGTTTAAAACAGAAANCATTCCAAATAAACTACCCTCNTATGGCCCACCTTATTCNTAACGGCCCTATGACACACCCAACANACCGCAACTATNAAACCACCANACAGAAAANTACACCACATATATAAGAAAAACATTCAAACCCTACAACTATACCCCTTACCCAAGGGAGCATTTACCTCAGGAGAAAATGACTACCCAACCCATANCACAGCAACAANTTTGTTCCTCCAACTTCACATTTCCAACATCCCAAACACTCNTNGNN]
consensusID : consensus_2003#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 784 fasta sequence
[CAGAATCCCCCGAGGTTAACGCTAAATGATATTGGTCTCAATTCTGATATTGAGCATCAGGTGCTAAGTTCTCCGAAGAGCCCAAGCATTAATTCATGGTTTGGGATTCAACCAAGGGTACGTACGTAGACATACCTGCTGATTTCGGCGCACATGATGATGAGTAAATTCTACTCAGCATTAGTATCACTTCAAGCTTCAGGGTATCTTACTTAACACGTGTATCCACCGACAGACCGCTATTACACTCTCTGNGCATCTGCGGAANGGATAGATGGTAACTGGTGAAAGGCCGGAGGTGTANATCCCATTACCTACCACTGGGGCTTACGGATATTGTGNACTAGTGGCACTAGTACNCCAAAGAGCCANACGAGTAGGGAGTTTTCGGTTGACCTCTCATTGNGACATTACCCCTGCCATACAAACACGATACACTACATCGTGTTATAGTGTGCAGAACACGGCCTTGAACGACGTTGCCTTCNCNTTATGGTGGNCCCTTCCGACNCCCTAAAGACNCTGAACGTTTTTAGGCNATCGAGCCCGTTGGTTTCTCCCGCCTCGAAACGCTTATCCGTAACTTCCGCNAACACCGGTAACTATGGGGTATGGACCCAAAGGTTACGATAAGCCGCTGGGTCAACTTTAGCCGTTCAAAGTGTGATAAAAGACTGGAAANAGTCGTTCCGAAGCTTTAAAGTTTTCCCTTANATTGGGGCTAGAGTTTATCAGTTGGGGCGATATATCTTGCGNAGGAAAAAGAACNTCGGTTAAAAATCAT]
[+] EMBL AL933423 [CAGAATCCCCCGAGGTTAACGCTAAATGATATTGGTCTCAATTCTGATATTGAGCATCAGGTGCTAAGTTCTCCGAAGAGCCCAAGCATTAATTCATGGTTTGGGATTCAACCAAGGGTACGTACGTAGACATACCTGCTGATTTCGGCGCACATGATGATGAGTAAATTCTACTCAGCATTAGTATCACTTCAAGCTTCAGGGTATCTTACTTAACACGTGTATCCACCGACAGACCGCTATTACACTCTCTGNGCATCTGCGGAANGGATAGATGGTAACTGGTGAAAGGCCGGAGGTGTANATCCCATTACCTACCACTGGGGCTTACGGATATTGTGNACTAGTGGCACTAGTACNCCAAAGAGCCANACGAGTAGGGAGTTTTCGGTTGACCTCTCATTGNGACATTACCCCTGCCATACAAACACGATACACTACATCGTGTTATAGTGTGCAGAACACGGCCTTGAACGACGTTGCCTTCNCNTTATGGTGGNCCCTTCCGACNCCCTAAAGACNCTGAACGTTTTTAGGCNATCGAGCCCGTTGGTTTCTCCCGCCTCGAAACGCTTATCCGTAACTTCCGCNAACACCGGTAACTATGGGGTATGGACCCAAAGGTTACGATAAGCCGCTGGGTCAACTTTAGCCGTTCAAAGTGTGATAAAAGACTGGAAANAGTCGTTCCGAAGCTTTAAAGTTTTCCCTTANATTGGGGCTAGAGTTTATCAGTTGGGGCGATATATCTTGCGNAGGAAAAAGAACNTCGGTTAAAAATCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2003#0 --AGATCCCGC-AGGTTAACGCTAATTGATATNGGTCNCAATCTTG-TATTGAGCATC-G 55
consensus_2003#1 CAGAATCCCCCGAGGTTAACGCTAAATGATATTGGTCTCAATTCTGATATTGAGCATCAG 60
***** * ************* ****** **** **** ** *********** *
consensus_2003#0 GTGCTAAGTTCTCCGAAGAGCCCAAGCATTAATTCATGGTTTGGGATTCAACCAAGG-TA 114
consensus_2003#1 GTGCTAAGTTCTCCGAAGAGCCCAAGCATTAATTCATGGTTTGGGATTCAACCAAGGGTA 120
********************************************************* **
consensus_2003#0 GGTACGTATGACTACC-GTTGATNTTGGCACTGATGATGATAAATTATCAGTTATATCAT 173
consensus_2003#1 CGTACGTAGACATACCTGCTGATTTCGGCGCACATGATGATGAGTAA--ATTCTACTCAG 178
******* **** * **** * *** * ******** * * * * * ***
consensus_2003#0 TACAACTACAGTNTTTCATATCAAAAGTTCCACCACCAAACGTTATACAATATTCTGATG 233
consensus_2003#1 CATTAGTATCACTTCAAGCTTCAGGGTATCTTACTTAACACGTGTATCCACCGACAGACC 238
* * ** * *** ** * * **** * * * **
consensus_2003#0 GCAAGTAGTNGTCACGTNGAAGCCCGAGTTATACCTTACTAANATTGGGTTAACGTTGGG 293
consensus_2003#1 GCTATTA--CACTCTCTGNGCATCTGCGGAANGGATAGATGGTAACTGGTGAAAGGCCGG 296
** * ** * * * * * * * * *** ** * **
consensus_2003#0 ACTGGGCCATCCCCAAAGAGCAACGATTGGGAATTTCGG---TCGCCTNCTCGGGACTNA 350
consensus_2003#1 A--GGTGTANATCCCATTACCTACCACTGGGGCTTACGGATATTGTGNACTAGTGGCACT 354
* ** * ** * * * ** * **** ** *** * * ** * * *
consensus_2003#0 ACCTTCCAAAAAAACAAAAATACTTACTCNCANTTCTCGCACACAGGGCCTNAAAGAATA 410
consensus_2003#1 AGTACNCCAAAGAGCCANACGAGTAG---GGAGTTTTCG-GTTGACCTCTCATTGNGACA 410
* * *** * * * * * * * ** *** * * * *
consensus_2003#0 CTACCCCTATGGATNGGCACCCTACCAACAAAAANACTACACACTATTCAANGCCACAGC 470
consensus_2003#1 TTACCCCTGCC-ATACAAACACGATACACTACATCGTGTTATAGTGTGCAGAAC-ACGGC 468
******* ** ** * * ** * * * * * * ** * ** **
consensus_2003#0 CTTGTCACCCCTTAGGAATACTAAATTCCCCAACGCACATNGCTACCCCANACTCNGTCN 530
consensus_2003#1 CTTG---------AACGACGTTGCCTTCNCNTTATGGTGGNCCCTTCCGACNCCCTAAAG 519
**** * * * *** * * * ** * * *
consensus_2003#0 -CACACCCCCTTCTCAAACNGTTACACCACTAACAAGGTTTAAAACAGAAANCATTCCAA 589
consensus_2003#1 ACNCTGAACGTTTTTAGGCNATCGAGCCCGTTGGTTTCTCCCGCCTCGAAACGCTTATCC 579
* * * ** * * ** * ** * * **** **
consensus_2003#0 ATAAACTACCCTCNTATGGCCCACCTTATTCNTAACGGCCCTATGACACACCCAACANAC 649
consensus_2003#1 GTAACTTCCGCNAACACCGGTAAC--TATGGGGTATGGACCCAAAGGTTA--CGATAAGC 635
*** * * * * * ** *** * ** ** * * * * * *
consensus_2003#0 CGCAACTATNAAACCA-CCANACAGAAAANTACACCACATATATAAGAAAAACATTCAAA 708
consensus_2003#1 CGCTGGGTCAACTTTAGCCGTTCAAAGTGTGATAAAAGACTGGAAANAGTCGTTCCGAAG 695
*** * * ** ** * * * * * ** * **
consensus_2003#0 CCCTACAACTATACCCCTTACCCAAGGGAGCATTTACCTCAGGAGAAAATGACTACCCAA 768
consensus_2003#1 CTTTAAAGTTTTCCCTTANATTGGGGCTAGAGTTTATCAGTTGGGGCGATA--TATC--- 750
* ** * * * ** * * ** **** * * * ** ** *
consensus_2003#0 CCCATANCACAGCAACAANTTTGTTCCTCCAACTTCACATTTCCAACATCCCAAACACTC 828
consensus_2003#1 ----TTGCGNAGGAAAAAGAACNTCGGTTAAAAATCAT---------------------- 784
* * ** ** ** * * ** ***
consensus_2003#0 NTNGNN 834
consensus_2003#1 ------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||