cluster # 2012

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Anopheles gambiae
cluster # 2012 cluster # 2012 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2012#0 length = 661 sequences # 1

consensus_2012#1 length = 516 sequences # 1

consensusID : consensus_2012#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 661
fasta sequence

                              [CCGCTCCCTGCAGCCGAAGAGAAAAATCCACACCTCCTGCCGGGAGCACTGCTGCCGGAAGAAGAAGTTCAACCGCTCGATCGATCCGGCCGCGCTCGAGAATGTGGTAGCACCGGCGCTTGGGCCGGTCCGGCGCTACAACACGGTGGCGACTCCCGCCGCGGTTCATCGGTCACCGATGGGATCGCTGTCATTATCTGCCAGGAAAGGGATGCAGCCGTCGGAAGCGGCATCGTTTCGGTTGCGGACGACTGGTTCACCTTCACCCGCGAGCGTTCGTGACCATCGTGACCGACCGGCAGCAGCAGCAGCAGCAGCAGCACCAGCACCATCGTCATGCAACAGCGATGGGATCGATCAGCAAAATTCAATTGCCAGCAATCGAGCACCGTGGCTGTTCCGGGTCGGTTTAATTGAAACGAAGCATCCCGTCTGCGTTGGCACTTTAATCCATCCGAGTTTAATATTAACAACTGCAGTGTGTGTTATAAACAAGCAACCGGAAGAGCTGATCGTCTGGAGCGAGCGTGCACCGGAGCGGCCCGAGGAAGCGACGCGGTGGCCCGTGGGCAGGATACTGTTGCCGGAGAAATTTGCCACCACTTTCGAGCGGCTCGAGAACAATGTTGCTTTACTGTTGCTGCTCGAGCCACCGCCGAGC]

[+] EMBL BM602154             [CCGCTCCCTGCAGCCGAAGAGAAAAATCCACACCTCCTGCCGGGAGCACTGCTGCCGGAAGAAGAAGTTCAACCGCTCGATCGATCCGGCCGCGCTCGAGAATGTGGTAGCACCGGCGCTTGGGCCGGTCCGGCGCTACAACACGGTGGCGACTCCCGCCGCGGTTCATCGGTCACCGATGGGATCGCTGTCATTATCTGCCAGGAAAGGGATGCAGCCGTCGGAAGCGGCATCGTTTCGGTTGCGGACGACTGGTTCACCTTCACCCGCGAGCGTTCGTGACCATCGTGACCGACCGGCAGCAGCAGCAGCAGCAGCAGCACCAGCACCATCGTCATGCAACAGCGATGGGATCGATCAGCAAAATTCAATTGCCAGCAATCGAGCACCGTGGCTGTTCCGGGTCGGTTTAATTGAAACGAAGCATCCCGTCTGCGTTGGCACTTTAATCCATCCGAGTTTAATATTAACAACTGCAGTGTGTGTTATAAACAAGCAACCGGAAGAGCTGATCGTCTGGAGCGAGCGTGCACCGGAGCGGCCCGAGGAAGCGACGCGGTGGCCCGTGGGCAGGATACTGTTGCCGGAGAAATTTGCCACCACTTTCGAGCGGCTCGAGAACAATGTTGCTTTACTGTTGCTGCTCGAGCCACCGCCGAGC]




>consensus_2012#0
CCGCTCCCTGCAGCCGAAGAGAAAAATCCACACCTCCTGCCGGGAGCACTGCTGCCGGAA
GAAGAAGTTCAACCGCTCGATCGATCCGGCCGCGCTCGAGAATGTGGTAGCACCGGCGCT
TGGGCCGGTCCGGCGCTACAACACGGTGGCGACTCCCGCCGCGGTTCATCGGTCACCGAT
GGGATCGCTGTCATTATCTGCCAGGAAAGGGATGCAGCCGTCGGAAGCGGCATCGTTTCG
GTTGCGGACGACTGGTTCACCTTCACCCGCGAGCGTTCGTGACCATCGTGACCGACCGGC
AGCAGCAGCAGCAGCAGCAGCACCAGCACCATCGTCATGCAACAGCGATGGGATCGATCA
GCAAAATTCAATTGCCAGCAATCGAGCACCGTGGCTGTTCCGGGTCGGTTTAATTGAAAC
GAAGCATCCCGTCTGCGTTGGCACTTTAATCCATCCGAGTTTAATATTAACAACTGCAGT
GTGTGTTATAAACAAGCAACCGGAAGAGCTGATCGTCTGGAGCGAGCGTGCACCGGAGCG
GCCCGAGGAAGCGACGCGGTGGCCCGTGGGCAGGATACTGTTGCCGGAGAAATTTGCCAC
CACTTTCGAGCGGCTCGAGAACAATGTTGCTTTACTGTTGCTGCTCGAGCCACCGCCGAG
C

consensusID : consensus_2012#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 516
fasta sequence

                              [CTGAACGTGACCACGAAGCACTGCGACTGTGAGGCTTACTCGTGTAAGGACCTGCTGGCCAGCTCCAGCCCGTCCCCGCTCAACTCCCTGCAGCCGAAGAGAAAAATCCACACCTCCTGCCGGGAGCACTGCTGCCGGAAGAAGAAGTTCAACCGCTCGATCGATCCGGCCGCGCTCGAGAATGTGGTAGCACCGGCGCTTGGGCCGGTCCGGCGCTACAACACGGTGGCGACTCCCGCCGCGGTTCATCGGTCACCGATGGGATCGCTGTCATTATCTGCCAGGAAAGGGATGCAGCCGTCGGAAGCGGCATCGTTTCGGTTGCGGACGACTGGTTCACCTTCACCCGCGAGCGTTCGTGACCATCGTGACCGACCGGCAGCAGCAGCAGCAGCACCATCGTCATGCAACAGCGATGGGATCGATCAGCAAAATTCAATTGCCAGCAATCGAGCACCGTGGCTGTTCCGGGTCGGTTTAATTGAAACGAAGCATCCCGTCTGTGTTGGCGCTTTA]

[+] EMBL BX603872             [CTGAACGTGACCACGAAGCACTGCGACTGTGAGGCTTACTCGTGTAAGGACCTGCTGGCCAGCTCCAGCCCGTCCCCGCTCAACTCCCTGCAGCCGAAGAGAAAAATCCACACCTCCTGCCGGGAGCACTGCTGCCGGAAGAAGAAGTTCAACCGCTCGATCGATCCGGCCGCGCTCGAGAATGTGGTAGCACCGGCGCTTGGGCCGGTCCGGCGCTACAACACGGTGGCGACTCCCGCCGCGGTTCATCGGTCACCGATGGGATCGCTGTCATTATCTGCCAGGAAAGGGATGCAGCCGTCGGAAGCGGCATCGTTTCGGTTGCGGACGACTGGTTCACCTTCACCCGCGAGCGTTCGTGACCATCGTGACCGACCGGCAGCAGCAGCAGCAGCACCATCGTCATGCAACAGCGATGGGATCGATCAGCAAAATTCAATTGCCAGCAATCGAGCACCGTGGCTGTTCCGGGTCGGTTTAATTGAAACGAAGCATCCCGTCTGTGTTGGCGCTTTA]




>consensus_2012#1
CTGAACGTGACCACGAAGCACTGCGACTGTGAGGCTTACTCGTGTAAGGACCTGCTGGCC
AGCTCCAGCCCGTCCCCGCTCAACTCCCTGCAGCCGAAGAGAAAAATCCACACCTCCTGC
CGGGAGCACTGCTGCCGGAAGAAGAAGTTCAACCGCTCGATCGATCCGGCCGCGCTCGAG
AATGTGGTAGCACCGGCGCTTGGGCCGGTCCGGCGCTACAACACGGTGGCGACTCCCGCC
GCGGTTCATCGGTCACCGATGGGATCGCTGTCATTATCTGCCAGGAAAGGGATGCAGCCG
TCGGAAGCGGCATCGTTTCGGTTGCGGACGACTGGTTCACCTTCACCCGCGAGCGTTCGT
GACCATCGTGACCGACCGGCAGCAGCAGCAGCAGCACCATCGTCATGCAACAGCGATGGG
ATCGATCAGCAAAATTCAATTGCCAGCAATCGAGCACCGTGGCTGTTCCGGGTCGGTTTA
ATTGAAACGAAGCATCCCGTCTGTGTTGGCGCTTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2012#0      ------------------------------------------------------------
consensus_2012#1      CTGAACGTGACCACGAAGCACTGCGACTGTGAGGCTTACTCGTGTAAGGACCTGCTGGCC 60
                                                                                  

consensus_2012#0      --------------------CCGCTCCCTGCAGCCGAAGAGAAAAATCCACACCTCCTGC 40
consensus_2012#1      AGCTCCAGCCCGTCCCCGCTCAACTCCCTGCAGCCGAAGAGAAAAATCCACACCTCCTGC 120
                                          *  *************************************

consensus_2012#0      CGGGAGCACTGCTGCCGGAAGAAGAAGTTCAACCGCTCGATCGATCCGGCCGCGCTCGAG 100
consensus_2012#1      CGGGAGCACTGCTGCCGGAAGAAGAAGTTCAACCGCTCGATCGATCCGGCCGCGCTCGAG 180
                      ************************************************************

consensus_2012#0      AATGTGGTAGCACCGGCGCTTGGGCCGGTCCGGCGCTACAACACGGTGGCGACTCCCGCC 160
consensus_2012#1      AATGTGGTAGCACCGGCGCTTGGGCCGGTCCGGCGCTACAACACGGTGGCGACTCCCGCC 240
                      ************************************************************

consensus_2012#0      GCGGTTCATCGGTCACCGATGGGATCGCTGTCATTATCTGCCAGGAAAGGGATGCAGCCG 220
consensus_2012#1      GCGGTTCATCGGTCACCGATGGGATCGCTGTCATTATCTGCCAGGAAAGGGATGCAGCCG 300
                      ************************************************************

consensus_2012#0      TCGGAAGCGGCATCGTTTCGGTTGCGGACGACTGGTTCACCTTCACCCGCGAGCGTTCGT 280
consensus_2012#1      TCGGAAGCGGCATCGTTTCGGTTGCGGACGACTGGTTCACCTTCACCCGCGAGCGTTCGT 360
                      ************************************************************

consensus_2012#0      GACCATCGTGACCGACCGGCAGCAGCAGCAGCAGCAGCAGCACCAGCACCATCGTCATGC 340
consensus_2012#1      GACCATCGTGACCGACCGGCAGCAGCAGCAGCAGCA------------CCATCGTCATGC 408
                      ************************************            ************

consensus_2012#0      AACAGCGATGGGATCGATCAGCAAAATTCAATTGCCAGCAATCGAGCACCGTGGCTGTTC 400
consensus_2012#1      AACAGCGATGGGATCGATCAGCAAAATTCAATTGCCAGCAATCGAGCACCGTGGCTGTTC 468
                      ************************************************************

consensus_2012#0      CGGGTCGGTTTAATTGAAACGAAGCATCCCGTCTGCGTTGGCACTTTAATCCATCCGAGT 460
consensus_2012#1      CGGGTCGGTTTAATTGAAACGAAGCATCCCGTCTGTGTTGGCGCTTTA------------ 516
                      *********************************** ****** *****            

consensus_2012#0      TTAATATTAACAACTGCAGTGTGTGTTATAAACAAGCAACCGGAAGAGCTGATCGTCTGG 520
consensus_2012#1      ------------------------------------------------------------
                                                                                  

consensus_2012#0      AGCGAGCGTGCACCGGAGCGGCCCGAGGAAGCGACGCGGTGGCCCGTGGGCAGGATACTG 580
consensus_2012#1      ------------------------------------------------------------
                                                                                  

consensus_2012#0      TTGCCGGAGAAATTTGCCACCACTTTCGAGCGGCTCGAGAACAATGTTGCTTTACTGTTG 640
consensus_2012#1      ------------------------------------------------------------
                                                                                  

consensus_2012#0      CTGCTCGAGCCACCGCCGAGC 661
consensus_2012#1      ---------------------