cluster # 2018

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Anopheles gambiae
cluster # 2018 cluster # 2018 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2018#0 length = 1497 sequences # 1

consensus_2018#1 length = 479 sequences # 1

consensusID : consensus_2018#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1497
fasta sequence

                              [CAGATCGGCNCGAGGGNCTACACAGTGAAGGAGCACGAATGATTGGGCGGGAATTGCGTTTTTGCGGGAGGAGGATAGATATATACATACATATATACGGGGACAGAGAGAGAGAGAACAGAGAGAACAAGGAATGCGTGATATAGGCAGGTAGGAAGATGTTGAGAGGTGCTTCAGGTTACAAACGGTTCAGGAGGAAGAGGATGGTGTATTTTTTTGGTTTTTNAAAAAAAGGAAGGGAAAGGAGGAATTGGGAAGTGGTTTTTTAATTCCTTGGGCTTTTAACCTTGGGGGCCAATTATTGAAGGTTTCCCCTTAACTGGGAACTTANATTTCGAAGGTATTCCAAACCCCGGGGGCAACGGGAAGGCCAGGGGAGGTTAAAAAACCCTCCTTCTTCAAGAGAACGGCGGCCTTAATTAAGAAGTTCTTAACAATTGAATTTCATTGAATCAGCCCATTTTTGGATTACCGGTTATACCCGGTTAATTCCTTTTCTTTGGCTTTTTTGGAAGCGGATTTTCCTTTTTTNTGTTTCTTTTCCCCGGGCCCGGAATTATTCTAACCAANAGTCCGGGAACCGGTTTTTAAAAGGAAATTTTTCAAACCAAGGCAANGAAATTAGGCGAGGAANCGTTAAGTTTTGTTTCCCCCCGGAAAAGTATTTACCCAAGGGGGCATTCCAAGAGGGTGTTCACGTTACCAAAGGAACTTCTGTTCCACACACANTTTTAAGGTAACCAANAGTTCCTTTTAAGGTTCTTCCGCGCCCCAATTCCATTTTTTGTTTAAAGAAACCCCAATTGGTCGGAATTACGGAAACACCCCCAGTTTTCCGGCTTCCAAACAATAATTTCTGAAACCCAATTTGCACAAGGTTTCCCCGAAAGGTTCCCGGNTTAAGGCCAAAAACCACAAAGTTTATTTCCGAACAGGAAGGCAAGAATGGAATTTCACACGAAATTCCCACAGGAAATTCCCGGGTCCGTTAAATTTCCCAAAGGCGAAGCTGAGCGCAATGGGTGCAAAAGCCCAAAAAACGNTCTGGTTCCCGGCTGACACCCGGTTTTTCAGTTTTTTTCACGGCCGTTCAAAATCGGCAACGCACACGGGAAGCTTANATTGGGTTGTCGTAGTGCCTTGGTTGGAACAAAAGAGCCAAGTTGGAACCCCAANTTTGCTCGANGTTCTCTCCAACAACAACATGTTTTCCCCCGGCCGGCGTTCATGGCAAACNTCAACNACGGGGGGGGAACAAAGCCACACNGANGACTCCCGCAAATTAAAGATTTGGGGGCGGTTTAACAANGGGATCGAATTTGGCCACCAAGCGTTGNTCNATCTGGCCACAAAGNTGGGTNTTAACTTGGCCGAACACGAATTGGGGGGCCNCACGACAANAGGGGTGNGGTCTGGTCCCACTATAGTAGGAAGCACCTCTCCTTTGAGAAGGTNCANCANCCTNCTCCTCTTGATAAGGCGCACCACGCCANAMVN]

[+] EMBL BX468634             [CAGATCGGCNCGAGGGNCTACACAGTGAAGGAGCACGAATGATTGGGCGGGAATTGCGTTTTTGCGGGAGGAGGATAGATATATACATACATATATACGGGGACAGAGAGAGAGAGAACAGAGAGAACAAGGAATGCGTGATATAGGCAGGTAGGAAGATGTTGAGAGGTGCTTCAGGTTACAAACGGTTCAGGAGGAAGAGGATGGTGTATTTTTTTGGTTTTTNAAAAAAAGGAAGGGAAAGGAGGAATTGGGAAGTGGTTTTTTAATTCCTTGGGCTTTTAACCTTGGGGGCCAATTATTGAAGGTTTCCCCTTAACTGGGAACTTANATTTCGAAGGTATTCCAAACCCCGGGGGCAACGGGAAGGCCAGGGGAGGTTAAAAAACCCTCCTTCTTCAAGAGAACGGCGGCCTTAATTAAGAAGTTCTTAACAATTGAATTTCATTGAATCAGCCCATTTTTGGATTACCGGTTATACCCGGTTAATTCCTTTTCTTTGGCTTTTTTGGAAGCGGATTTTCCTTTTTTNTGTTTCTTTTCCCCGGGCCCGGAATTATTCTAACCAANAGTCCGGGAACCGGTTTTTAAAAGGAAATTTTTCAAACCAAGGCAANGAAATTAGGCGAGGAANCGTTAAGTTTTGTTTCCCCCCGGAAAAGTATTTACCCAAGGGGGCATTCCAAGAGGGTGTTCACGTTACCAAAGGAACTTCTGTTCCACACACANTTTTAAGGTAACCAANAGTTCCTTTTAAGGTTCTTCCGCGCCCCAATTCCATTTTTTGTTTAAAGAAACCCCAATTGGTCGGAATTACGGAAACACCCCCAGTTTTCCGGCTTCCAAACAATAATTTCTGAAACCCAATTTGCACAAGGTTTCCCCGAAAGGTTCCCGGNTTAAGGCCAAAAACCACAAAGTTTATTTCCGAACAGGAAGGCAAGAATGGAATTTCACACGAAATTCCCACAGGAAATTCCCGGGTCCGTTAAATTTCCCAAAGGCGAAGCTGAGCGCAATGGGTGCAAAAGCCCAAAAAACGNTCTGGTTCCCGGCTGACACCCGGTTTTTCAGTTTTTTTCACGGCCGTTCAAAATCGGCAACGCACACGGGAAGCTTANATTGGGTTGTCGTAGTGCCTTGGTTGGAACAAAAGAGCCAAGTTGGAACCCCAANTTTGCTCGANGTTCTCTCCAACAACAACATGTTTTCCCCCGGCCGGCGTTCATGGCAAACNTCAACNACGGGGGGGGAACAAAGCCACACNGANGACTCCCGCAAATTAAAGATTTGGGGGCGGTTTAACAANGGGATCGAATTTGGCCACCAAGCGTTGNTCNATCTGGCCACAAAGNTGGGTNTTAACTTGGCCGAACACGAATTGGGGGGCCNCACGACAANAGGGGTGNGGTCTGGTCCCACTATAGTAGGAAGCACCTCTCCTTTGAGAAGGTNCANCANCCTNCTCCTCTTGATAAGGCGCACCACGCCANAMVN]




>consensus_2018#0
CAGATCGGCNCGAGGGNCTACACAGTGAAGGAGCACGAATGATTGGGCGGGAATTGCGTT
TTTGCGGGAGGAGGATAGATATATACATACATATATACGGGGACAGAGAGAGAGAGAACA
GAGAGAACAAGGAATGCGTGATATAGGCAGGTAGGAAGATGTTGAGAGGTGCTTCAGGTT
ACAAACGGTTCAGGAGGAAGAGGATGGTGTATTTTTTTGGTTTTTNAAAAAAAGGAAGGG
AAAGGAGGAATTGGGAAGTGGTTTTTTAATTCCTTGGGCTTTTAACCTTGGGGGCCAATT
ATTGAAGGTTTCCCCTTAACTGGGAACTTANATTTCGAAGGTATTCCAAACCCCGGGGGC
AACGGGAAGGCCAGGGGAGGTTAAAAAACCCTCCTTCTTCAAGAGAACGGCGGCCTTAAT
TAAGAAGTTCTTAACAATTGAATTTCATTGAATCAGCCCATTTTTGGATTACCGGTTATA
CCCGGTTAATTCCTTTTCTTTGGCTTTTTTGGAAGCGGATTTTCCTTTTTTNTGTTTCTT
TTCCCCGGGCCCGGAATTATTCTAACCAANAGTCCGGGAACCGGTTTTTAAAAGGAAATT
TTTCAAACCAAGGCAANGAAATTAGGCGAGGAANCGTTAAGTTTTGTTTCCCCCCGGAAA
AGTATTTACCCAAGGGGGCATTCCAAGAGGGTGTTCACGTTACCAAAGGAACTTCTGTTC
CACACACANTTTTAAGGTAACCAANAGTTCCTTTTAAGGTTCTTCCGCGCCCCAATTCCA
TTTTTTGTTTAAAGAAACCCCAATTGGTCGGAATTACGGAAACACCCCCAGTTTTCCGGC
TTCCAAACAATAATTTCTGAAACCCAATTTGCACAAGGTTTCCCCGAAAGGTTCCCGGNT
TAAGGCCAAAAACCACAAAGTTTATTTCCGAACAGGAAGGCAAGAATGGAATTTCACACG
AAATTCCCACAGGAAATTCCCGGGTCCGTTAAATTTCCCAAAGGCGAAGCTGAGCGCAAT
GGGTGCAAAAGCCCAAAAAACGNTCTGGTTCCCGGCTGACACCCGGTTTTTCAGTTTTTT
TCACGGCCGTTCAAAATCGGCAACGCACACGGGAAGCTTANATTGGGTTGTCGTAGTGCC
TTGGTTGGAACAAAAGAGCCAAGTTGGAACCCCAANTTTGCTCGANGTTCTCTCCAACAA
CAACATGTTTTCCCCCGGCCGGCGTTCATGGCAAACNTCAACNACGGGGGGGGAACAAAG
CCACACNGANGACTCCCGCAAATTAAAGATTTGGGGGCGGTTTAACAANGGGATCGAATT
TGGCCACCAAGCGTTGNTCNATCTGGCCACAAAGNTGGGTNTTAACTTGGCCGAACACGA
ATTGGGGGGCCNCACGACAANAGGGGTGNGGTCTGGTCCCACTATAGTAGGAAGCACCTC
TCCTTTGAGAAGGTNCANCANCCTNCTCCTCTTGATAAGGCGCACCACGCCANAMVN

consensusID : consensus_2018#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 479
fasta sequence

                              [CCGCACGATGATTACGATTACGGCGAGGTGAACCAGCTGCTCGACCGCTCGCTCAAGATGTTCATCAAGACGGCCTGCTGCTTCCCGGAGCGCATCACCAAGCTGGACTACGACAGTGTGCTGGTGGAGCTGCAGCACAGTGAAAAGGTTCACATCAATCTTATGATCTTGGAAGCCCGCAATCAGGCGGAGCTGCTGTATGCCTTACGCGAAGTTATGCGATACATGACATGATTACCACCGGCACCGGCAAATGCCAGCCCTTCGGCCAGTTTTGTGAGCCTGCCTACCACAGTGAAGGAGCACGAATGATTGGGCGGGAATTGCGTTTTTGCGGGAGGAGGATAGATATATACATACATATATACGGGGACAGAGAGAGACAGAGAGAGAACAGAGAGAACAAGGAATGCGTGATATAGGCAGGTAGGAAGATGTTGAGAGGTGCTGCAGTTACAAACGTTCAGAGAAGAGATGTG]

[+] EMBL BM601979             [CCGCACGATGATTACGATTACGGCGAGGTGAACCAGCTGCTCGACCGCTCGCTCAAGATGTTCATCAAGACGGCCTGCTGCTTCCCGGAGCGCATCACCAAGCTGGACTACGACAGTGTGCTGGTGGAGCTGCAGCACAGTGAAAAGGTTCACATCAATCTTATGATCTTGGAAGCCCGCAATCAGGCGGAGCTGCTGTATGCCTTACGCGAAGTTATGCGATACATGACATGATTACCACCGGCACCGGCAAATGCCAGCCCTTCGGCCAGTTTTGTGAGCCTGCCTACCACAGTGAAGGAGCACGAATGATTGGGCGGGAATTGCGTTTTTGCGGGAGGAGGATAGATATATACATACATATATACGGGGACAGAGAGAGACAGAGAGAGAACAGAGAGAACAAGGAATGCGTGATATAGGCAGGTAGGAAGATGTTGAGAGGTGCTGCAGTTACAAACGTTCAGAGAAGAGATGTG]




>consensus_2018#1
CCGCACGATGATTACGATTACGGCGAGGTGAACCAGCTGCTCGACCGCTCGCTCAAGATG
TTCATCAAGACGGCCTGCTGCTTCCCGGAGCGCATCACCAAGCTGGACTACGACAGTGTG
CTGGTGGAGCTGCAGCACAGTGAAAAGGTTCACATCAATCTTATGATCTTGGAAGCCCGC
AATCAGGCGGAGCTGCTGTATGCCTTACGCGAAGTTATGCGATACATGACATGATTACCA
CCGGCACCGGCAAATGCCAGCCCTTCGGCCAGTTTTGTGAGCCTGCCTACCACAGTGAAG
GAGCACGAATGATTGGGCGGGAATTGCGTTTTTGCGGGAGGAGGATAGATATATACATAC
ATATATACGGGGACAGAGAGAGACAGAGAGAGAACAGAGAGAACAAGGAATGCGTGATAT
AGGCAGGTAGGAAGATGTTGAGAGGTGCTGCAGTTACAAACGTTCAGAGAAGAGATGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2018#0      CAGATCGGCNCGAGGGNCTACACAGTGAAGGAGCACGAATGATTGGGCGGGAATTGCGTT 60
consensus_2018#1      ------------------------------------------------------------
                                                                                  

consensus_2018#0      TTTGCGGGAGGAGGATAGATATATACATACATATATACGGGGACAGAGAGAGAGAGAACA 120
consensus_2018#1      ------------------------------------------------------------
                                                                                  

consensus_2018#0      GAGAGAACAAGGAATGCGTGATATAGGCAGGTAGGAAGATGTTGAGAGGTGCTTCAGGTT 180
consensus_2018#1      ------------------------------------------------------------
                                                                                  

consensus_2018#0      ACAAACGGTTCAGGAGGAAGAGGATGGTGTATTTTTTTGGTTTTTNAAAAAAAGGAAGGG 240
consensus_2018#1      ------------------------------------------------------------
                                                                                  

consensus_2018#0      AAAGGAGGAATTGGGAAGTGGTTTTTTAATTCCTTGGGCTTTTAACCTTGGGGGCCAATT 300
consensus_2018#1      ------------------------------------------------------------
                                                                                  

consensus_2018#0      ATTGAAGGTTTCCCCTTAACTGGGAACTTANATTTCGAAGGTATTCCAAACCCCGGGGGC 360
consensus_2018#1      ------------------------------------------------------------
                                                                                  

consensus_2018#0      AACGGGAAGGCCAGGGGAGGTTAAAAAACCCTCCTTCTTCAAGAGAACGGCGGCCTTAAT 420
consensus_2018#1      ------------------------------------------------------------
                                                                                  

consensus_2018#0      TAAGAAGTTCTTAACAATTGAATTTCATTGAATCAGCCCATTTTTGGATTACCGGTTATA 480
consensus_2018#1      ------------------------------------------------------------
                                                                                  

consensus_2018#0      CCCGGTTAATTCCTTTTCTTTGGCTTTTTTGGAAGCGGATTTTCCTTTTTTNTGTTTCTT 540
consensus_2018#1      ------------------------------------------------------------
                                                                                  

consensus_2018#0      TTCCCCGGGCCCGGAATTATTCTAACCAANAGTCCGGGAACCGGTTTTTAAAAGGAAATT 600
consensus_2018#1      ------------------------------------------------------------
                                                                                  

consensus_2018#0      TTTCAAACCAAGGCAANGAAATTAGGCGAGGAANCGTTAAGTTTTGTTTCCCCCCGGAAA 660
consensus_2018#1      ------------------------------------------------------------
                                                                                  

consensus_2018#0      AGTATTTACCCAAGGGGGCATTCCAAGAGGGTGTTCACGTTACCAAAGGAACTTCTGTTC 720
consensus_2018#1      ------------------------------------------------------------
                                                                                  

consensus_2018#0      CACACACANTTTTAAGGTAACCAANAGTTCCTTTTAAGGTTCTTCCGCGCCCCAATTCCA 780
consensus_2018#1      ------------------------------------------------------------
                                                                                  

consensus_2018#0      TTTTTTGTTTAAAGAAACCCCAATTGGTCGGAATTACGGAAACACCCCCAGTTTTCCGGC 840
consensus_2018#1      ------------------------------------------------------------
                                                                                  

consensus_2018#0      TTCCAAACAATAATTTCTGAAACCCAATTTGCACAAGGTTTCCCCGAAAGGTTCCCGGNT 900
consensus_2018#1      ------------------------------------------------------------
                                                                                  

consensus_2018#0      TAAGGCCAAAAACCACAAAGTTTATTTCCGAACAGGAAGGCAAGAATGGAATTTCACACG 960
consensus_2018#1      ------------------------------------------------------------
                                                                                  

consensus_2018#0      AAATTCCCACAGGAAATTCCCGGGTCCGTTAAATTTC-CCAAAGGCGAAGCTGAGCGCAA 1019
consensus_2018#1      ------CCGCACGATGATTACGATTACGGCGAGGTGAACCAGCTGCTCGACCGCTCGCTC 54
                            ** ** **   *  **  * **   *  *   ***   **    * *  ***  

consensus_2018#0      TGGGTGCAAAAGCCCAAAAAACGNTCTGGTTCCCGGCTGACACCCGGTTTTTCAGTTTTT 1079
consensus_2018#1      AAGATGTTCA--TCAAGACGGCCTGCTGCTTCCCGGAGCGCATC-ACCAAGCTGGACTAC 111
                        * **   *   * * *   *   *** *******    ** *          *  *  

consensus_2018#0      TTCACGGCCGTTCAAAATCGGCAACGCACACGGGAAGCTTANATTGGGTTGTCGTAGTGC 1139
consensus_2018#1      GACAGTGTGCTGGTGGAGCTGCAGCACAGTGAAAAGGTTCACATCAA----TCTTATGAT 167
                        **  *   *     * * *** * **      * * * * **       ** **    

consensus_2018#0      CTTGGTTGGA-ACAAAAGAGCCAAGTTGGAACCCCAANTTTGCTCGANGTTCTCTCCAAC 1198
consensus_2018#1      CTTGGAAGCCCGCAATCAGGCGGAGCTGCTGTAT--GCCTTACGCGAAGTTATGCGATAC 225
                      *****  *    ***    **  ** **           ** * *** *** *     **

consensus_2018#0      AACAACATGTTTTCCCCCGGCCGGCGTTCATGGCAAACNTCAACNACGGGGGGGGAACAA 1258
consensus_2018#1      A-TGACATGATTACCACCGGC-------ACCGGCAAATGCCAGCCCTTCGGC-----CAG 272
                      *   ***** ** ** *****          ******   ** *     **      ** 

consensus_2018#0      AGCCACACNGANGACTCCCGCAAATTAAAGATTTGGGGGCGGTTTAACAANGGGATCGAA 1318
consensus_2018#1      TTTTGTGAGCCTGCCTACCACAG--TGAAGGAGCACGAATGATTGGGCGGGAATTGCGTT 330
                                  * ** ** **   * ***      *   * **   *        **  

consensus_2018#0      TTTGGCCACCAAGCGTTGNTCNATCTGGCCACAAAGNTGGGTNTTAACTTGGCCGAACAC 1378
consensus_2018#1      TTTGCGGGAGGAGGATAGATATATACATACATATATACGGGGACAGAGAGAGACAGAGAG 390
                      ****       **  * * *  **     ** * *   ***     *    * *  * * 

consensus_2018#0      GAATTGGGGGGCCNCACGACAANAGGGGTGNGGTCTGGTCCCACTATAGTAGGAAGCACC 1438
consensus_2018#1      AGAACAGAGAGA-ACAAGGAATGCGTGATATAGGCAGGTAGGAAGATGTTGAGAGGTGCT 449
                        *   * * *   ** *  *   * * *   * * ***   *  **  *  ** *  * 

consensus_2018#0      TCTCCTTTGAGAAGGTNCANCANCCTNCTCCTCTTGATAAGGCGCACCACGCCANAMVN 1497
consensus_2018#1      GCAG--TTACAAACGTTCAGAGAAGAGATGTG--------------------------- 479
                       *    **   ** ** **         *