cluster # 2023

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 2023 cluster # 2023 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2023#0 length = 853 sequences # 1

consensus_2023#1 length = 451 sequences # 1

consensusID : consensus_2023#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 853
fasta sequence

                              [AGATCGGCACGATGGCGACGTCGAGCGGACCGACACCCTGCAGGGTCTTGCCCTGAAGTACGGATGTAGTATGGAACAAATTAGGCGAGTAAATAGGTTACTGCCCACGGATACCATCTTCCTGCGACCGTTCCTGATGGTACCGGTGGCGAAAGATTCACCCCACTATCCTAAGGACCCGGAAGCAATCATACGTCCAAATGCGCTGACCAGCGCCAGCCGGATGCCGTCCGGGGGAAGTGCTAGCACCAGCAGCAGCATCATTAGCAACAACAACAACAGTATCAGCTCGGACGGTAACGGATACTCGATGGGCGACGAATCGCCGCTCGTCTCGCCCGAGGAGGAAAGTCGCAAGAATCTGGAAGAGTTTCTCGGCAAAATCGACAGCTCGATCGCGTCCACCCGGAAGTGCATTGCGGAGGTGCAGCGAAACAGCGACTTTGTCACGAGCAGCCAGAGCGACGACAATCTGTTCTTCTCGTCCTCGTCCGGCGGGGTGGGCAGTGGGAGCGGCAGCAGTGGGTACTACTCGAAACCGCGTGCCTATTCGAACGCATCGTCCTCGTCGTCGATCTCGTCCTACCAGCAGTACCACTATCACGTACCCCGGGCAACAGCGCGCAGGCACGTCGGCGCGGGTGGGTAGCGGGGCGAACAGCAGCACACACAAGCGCCAAGAGCTCCTCCGGGGAGTGCGGCGTCCGATACGAAACCAGGTGATTCGGTGATTGAACGCCAAGGGCCAAGCGGGGTGCAAAAGTTCCCTTCCAGAAAAGCTNNGAGCGGCCCAGCAGGAACAAGCTGTTCGAAGTTGTAGCATCAAACCGGCGGGCAAGGGATATTGNTCGTA]

[+] EMBL BX467752             [AGATCGGCACGATGGCGACGTCGAGCGGACCGACACCCTGCAGGGTCTTGCCCTGAAGTACGGATGTAGTATGGAACAAATTAGGCGAGTAAATAGGTTACTGCCCACGGATACCATCTTCCTGCGACCGTTCCTGATGGTACCGGTGGCGAAAGATTCACCCCACTATCCTAAGGACCCGGAAGCAATCATACGTCCAAATGCGCTGACCAGCGCCAGCCGGATGCCGTCCGGGGGAAGTGCTAGCACCAGCAGCAGCATCATTAGCAACAACAACAACAGTATCAGCTCGGACGGTAACGGATACTCGATGGGCGACGAATCGCCGCTCGTCTCGCCCGAGGAGGAAAGTCGCAAGAATCTGGAAGAGTTTCTCGGCAAAATCGACAGCTCGATCGCGTCCACCCGGAAGTGCATTGCGGAGGTGCAGCGAAACAGCGACTTTGTCACGAGCAGCCAGAGCGACGACAATCTGTTCTTCTCGTCCTCGTCCGGCGGGGTGGGCAGTGGGAGCGGCAGCAGTGGGTACTACTCGAAACCGCGTGCCTATTCGAACGCATCGTCCTCGTCGTCGATCTCGTCCTACCAGCAGTACCACTATCACGTACCCCGGGCAACAGCGCGCAGGCACGTCGGCGCGGGTGGGTAGCGGGGCGAACAGCAGCACACACAAGCGCCAAGAGCTCCTCCGGGGAGTGCGGCGTCCGATACGAAACCAGGTGATTCGGTGATTGAACGCCAAGGGCCAAGCGGGGTGCAAAAGTTCCCTTCCAGAAAAGCTNNGAGCGGCCCAGCAGGAACAAGCTGTTCGAAGTTGTAGCATCAAACCGGCGGGCAAGGGATATTGNTCGTA]




>consensus_2023#0
AGATCGGCACGATGGCGACGTCGAGCGGACCGACACCCTGCAGGGTCTTGCCCTGAAGTA
CGGATGTAGTATGGAACAAATTAGGCGAGTAAATAGGTTACTGCCCACGGATACCATCTT
CCTGCGACCGTTCCTGATGGTACCGGTGGCGAAAGATTCACCCCACTATCCTAAGGACCC
GGAAGCAATCATACGTCCAAATGCGCTGACCAGCGCCAGCCGGATGCCGTCCGGGGGAAG
TGCTAGCACCAGCAGCAGCATCATTAGCAACAACAACAACAGTATCAGCTCGGACGGTAA
CGGATACTCGATGGGCGACGAATCGCCGCTCGTCTCGCCCGAGGAGGAAAGTCGCAAGAA
TCTGGAAGAGTTTCTCGGCAAAATCGACAGCTCGATCGCGTCCACCCGGAAGTGCATTGC
GGAGGTGCAGCGAAACAGCGACTTTGTCACGAGCAGCCAGAGCGACGACAATCTGTTCTT
CTCGTCCTCGTCCGGCGGGGTGGGCAGTGGGAGCGGCAGCAGTGGGTACTACTCGAAACC
GCGTGCCTATTCGAACGCATCGTCCTCGTCGTCGATCTCGTCCTACCAGCAGTACCACTA
TCACGTACCCCGGGCAACAGCGCGCAGGCACGTCGGCGCGGGTGGGTAGCGGGGCGAACA
GCAGCACACACAAGCGCCAAGAGCTCCTCCGGGGAGTGCGGCGTCCGATACGAAACCAGG
TGATTCGGTGATTGAACGCCAAGGGCCAAGCGGGGTGCAAAAGTTCCCTTCCAGAAAAGC
TNNGAGCGGCCCAGCAGGAACAAGCTGTTCGAAGTTGTAGCATCAAACCGGCGGGCAAGG
GATATTGNTCGTA

consensusID : consensus_2023#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 451
fasta sequence

                              [AGATCCCAGGTTANGTCGAGCGGACGACACCTGCAGGGTCTTGCCCTAAGTACGGATGTAGTATGGAACAAATTAGGCGAGTAAATAGGTTACTGCCCACGGATACCATCTTCCTGCGACGTTCCTGATGGTACCGGTGGCGAAAGATTCACCCCACTATCCTAAGGACCCGGAAGCAATCATACGTCCAAATGCGCTGACCAGGCCAGCGGATGCCGTCGGGGGAAGTGCTAGCACCAGAGAGATCATTAGCAACAACAACAACAGTATCAGCTCGGACGGTAACGGATACTCGATGGGCGACGAATCGCCGCTCGTCTCGCCCGAGGAGGAAAGTCGCAAGAATCTGGAAGAGTTTCTCGGCAAAATCGACAGCTCGATCGCGTCCACCCGGAAGTGCATTGCGGAGGTGCAGCGAAACAGGACTTTTTGGTCCACGGAAGCAGCCCAG]

[+] EMBL AL695308             [AGATCCCAGGTTANGTCGAGCGGACGACACCTGCAGGGTCTTGCCCTAAGTACGGATGTAGTATGGAACAAATTAGGCGAGTAAATAGGTTACTGCCCACGGATACCATCTTCCTGCGACGTTCCTGATGGTACCGGTGGCGAAAGATTCACCCCACTATCCTAAGGACCCGGAAGCAATCATACGTCCAAATGCGCTGACCAGGCCAGCGGATGCCGTCGGGGGAAGTGCTAGCACCAGAGAGATCATTAGCAACAACAACAACAGTATCAGCTCGGACGGTAACGGATACTCGATGGGCGACGAATCGCCGCTCGTCTCGCCCGAGGAGGAAAGTCGCAAGAATCTGGAAGAGTTTCTCGGCAAAATCGACAGCTCGATCGCGTCCACCCGGAAGTGCATTGCGGAGGTGCAGCGAAACAGGACTTTTTGGTCCACGGAAGCAGCCCAG]




>consensus_2023#1
AGATCCCAGGTTANGTCGAGCGGACGACACCTGCAGGGTCTTGCCCTAAGTACGGATGTA
GTATGGAACAAATTAGGCGAGTAAATAGGTTACTGCCCACGGATACCATCTTCCTGCGAC
GTTCCTGATGGTACCGGTGGCGAAAGATTCACCCCACTATCCTAAGGACCCGGAAGCAAT
CATACGTCCAAATGCGCTGACCAGGCCAGCGGATGCCGTCGGGGGAAGTGCTAGCACCAG
AGAGATCATTAGCAACAACAACAACAGTATCAGCTCGGACGGTAACGGATACTCGATGGG
CGACGAATCGCCGCTCGTCTCGCCCGAGGAGGAAAGTCGCAAGAATCTGGAAGAGTTTCT
CGGCAAAATCGACAGCTCGATCGCGTCCACCCGGAAGTGCATTGCGGAGGTGCAGCGAAA
CAGGACTTTTTGGTCCACGGAAGCAGCCCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2023#0      AGATCGGCACGATGGCGACGTCGAGCGGACCGACACCCTGCAGGGTCTTGCCCTGAAGTA 60
consensus_2023#1      -----AGATCCCAGGTTANGTCGAGCGGAC-GACACC-TGCAGGGTCTTGCCCT-AAGTA 52
                            *  *   **  * *********** ****** **************** *****

consensus_2023#0      CGGATGTAGTATGGAACAAATTAGGCGAGTAAATAGGTTACTGCCCACGGATACCATCTT 120
consensus_2023#1      CGGATGTAGTATGGAACAAATTAGGCGAGTAAATAGGTTACTGCCCACGGATACCATCTT 112
                      ************************************************************

consensus_2023#0      CCTGCGACCGTTCCTGATGGTACCGGTGGCGAAAGATTCACCCCACTATCCTAAGGACCC 180
consensus_2023#1      CCTGCGAC-GTTCCTGATGGTACCGGTGGCGAAAGATTCACCCCACTATCCTAAGGACCC 171
                      ******** ***************************************************

consensus_2023#0      GGAAGCAATCATACGTCCAAATGCGCTGACCAGCGCCAGCCGGATGCCGTCCGGGGGAAG 240
consensus_2023#1      GGAAGCAATCATACGTCCAAATGCGCTGACCAG-GCCAGC-GGATGCCGTC-GGGGGAAG 228
                      ********************************* ****** ********** ********

consensus_2023#0      TGCTAGCACCAGCAGCAGCATCATTAGCAACAACAACAACAGTATCAGCTCGGACGGTAA 300
consensus_2023#1      TGCTAGCACCAGAGAG---ATCATTAGCAACAACAACAACAGTATCAGCTCGGACGGTAA 285
                      ************       *****************************************

consensus_2023#0      CGGATACTCGATGGGCGACGAATCGCCGCTCGTCTCGCCCGAGGAGGAAAGTCGCAAGAA 360
consensus_2023#1      CGGATACTCGATGGGCGACGAATCGCCGCTCGTCTCGCCCGAGGAGGAAAGTCGCAAGAA 345
                      ************************************************************

consensus_2023#0      TCTGGAAGAGTTTCTCGGCAAAATCGACAGCTCGATCGCGTCCACCCGGAAGTGCATTGC 420
consensus_2023#1      TCTGGAAGAGTTTCTCGGCAAAATCGACAGCTCGATCGCGTCCACCCGGAAGTGCATTGC 405
                      ************************************************************

consensus_2023#0      GGAGGTGCAGCGAAACAGCGACTTTGTCACGAGCAGCCAGAGCGACGACAATCTGTTCTT 480
consensus_2023#1      GGAGGTGCAGCGAAACAG-GACTTTTTGGTCCACGGAAGCAGCCCAG------------- 451
                      ****************** ****** *      * *    ***   *             

consensus_2023#0      CTCGTCCTCGTCCGGCGGGGTGGGCAGTGGGAGCGGCAGCAGTGGGTACTACTCGAAACC 540
consensus_2023#1      ------------------------------------------------------------
                                                                                  

consensus_2023#0      GCGTGCCTATTCGAACGCATCGTCCTCGTCGTCGATCTCGTCCTACCAGCAGTACCACTA 600
consensus_2023#1      ------------------------------------------------------------
                                                                                  

consensus_2023#0      TCACGTACCCCGGGCAACAGCGCGCAGGCACGTCGGCGCGGGTGGGTAGCGGGGCGAACA 660
consensus_2023#1      ------------------------------------------------------------
                                                                                  

consensus_2023#0      GCAGCACACACAAGCGCCAAGAGCTCCTCCGGGGAGTGCGGCGTCCGATACGAAACCAGG 720
consensus_2023#1      ------------------------------------------------------------
                                                                                  

consensus_2023#0      TGATTCGGTGATTGAACGCCAAGGGCCAAGCGGGGTGCAAAAGTTCCCTTCCAGAAAAGC 780
consensus_2023#1      ------------------------------------------------------------
                                                                                  

consensus_2023#0      TNNGAGCGGCCCAGCAGGAACAAGCTGTTCGAAGTTGTAGCATCAAACCGGCGGGCAAGG 840
consensus_2023#1      ------------------------------------------------------------
                                                                                  

consensus_2023#0      GATATTGNTCGTA 853
consensus_2023#1      -------------