cluster # 2029

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Anopheles gambiae
cluster # 2029 cluster # 2029 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2029#0 length = 493 sequences # 1

consensus_2029#1 length = 429 sequences # 1

consensusID : consensus_2029#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 493
fasta sequence

                              [CCGCGGCAACATCACCAAACGCAGGAAGATTCACGGCTTTGCTCTGCACGAATCGACAAAAGTGCGTCCAACAGTATTGTTTTAAGCAACATCAGCAAAATGCTACAATTCGAACGAAGAACGATCGTGAACGGAGCGCTGATGAAACGCCACGTTGGCCAACCGATCAGCATCCATTTAAAGGTGGAACGCGCCGACGATGGTTGCAAATCGTTCAGCGGCAAATCGACGGACGGTGTCAATGTCCAGGTGCAACTTTCGGATCCCTTGAATGGTGTTTGCTCAGGATGGGTCGAAGTGATAGGCATTGCGGCTCCCAATGATACGGTTCGCGGAAAGGAGATAATAACGTACTTCAACAGCGGGGAGAAAACGGAAAGTTTCGATGTGGATGGACACAACATGCTGTGCACATTGATGTCGGTTTGCAAGGAACCTTTCTACATGGGTCCACAAATGTAACTCTCTGGATAATATACGATACTTTGAATTT]

[+] EMBL BM591357             [CCGCGGCAACATCACCAAACGCAGGAAGATTCACGGCTTTGCTCTGCACGAATCGACAAAAGTGCGTCCAACAGTATTGTTTTAAGCAACATCAGCAAAATGCTACAATTCGAACGAAGAACGATCGTGAACGGAGCGCTGATGAAACGCCACGTTGGCCAACCGATCAGCATCCATTTAAAGGTGGAACGCGCCGACGATGGTTGCAAATCGTTCAGCGGCAAATCGACGGACGGTGTCAATGTCCAGGTGCAACTTTCGGATCCCTTGAATGGTGTTTGCTCAGGATGGGTCGAAGTGATAGGCATTGCGGCTCCCAATGATACGGTTCGCGGAAAGGAGATAATAACGTACTTCAACAGCGGGGAGAAAACGGAAAGTTTCGATGTGGATGGACACAACATGCTGTGCACATTGATGTCGGTTTGCAAGGAACCTTTCTACATGGGTCCACAAATGTAACTCTCTGGATAATATACGATACTTTGAATTT]




>consensus_2029#0
CCGCGGCAACATCACCAAACGCAGGAAGATTCACGGCTTTGCTCTGCACGAATCGACAAA
AGTGCGTCCAACAGTATTGTTTTAAGCAACATCAGCAAAATGCTACAATTCGAACGAAGA
ACGATCGTGAACGGAGCGCTGATGAAACGCCACGTTGGCCAACCGATCAGCATCCATTTA
AAGGTGGAACGCGCCGACGATGGTTGCAAATCGTTCAGCGGCAAATCGACGGACGGTGTC
AATGTCCAGGTGCAACTTTCGGATCCCTTGAATGGTGTTTGCTCAGGATGGGTCGAAGTG
ATAGGCATTGCGGCTCCCAATGATACGGTTCGCGGAAAGGAGATAATAACGTACTTCAAC
AGCGGGGAGAAAACGGAAAGTTTCGATGTGGATGGACACAACATGCTGTGCACATTGATG
TCGGTTTGCAAGGAACCTTTCTACATGGGTCCACAAATGTAACTCTCTGGATAATATACG
ATACTTTGAATTT

consensusID : consensus_2029#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 429
fasta sequence

                              [CCGCCCACGCGTCCGTCCAACAGTATTGTTTTAAGCAACATCAGCAAAATGCTACAATTCGAACGAAGAACGATCGTGAACGGAGCGCTGATGAAACGCCACGTTGGCCAACCGATCAGCATCCATTTAAAGGTGGAACGCGCCGACGATGGTTGCAAATCGTTCAGCGGCAAATCGACGGACGGAGTCAATGTCCAGGTGCAACTGTCGGATCCCTTGAATGGTGTTTGCTCAGGATGGGTCGAAGTGATAGGCATTGCGGCTCCCAATGATACGGTTCGCGGAAAGGAGATAATAACGTACTTCAACAGCGGGGAGAAAACGGAAAGTTTCGATGTGGATGGACACAACATGCTGTGCACATTGATGTCGGTTTGCAAGGAACCTTTCTACATGGGTCCACAAATGTAACTCTCTGGATAATATAAG]

[+] EMBL BM595380             [CCGCCCACGCGTCCGTCCAACAGTATTGTTTTAAGCAACATCAGCAAAATGCTACAATTCGAACGAAGAACGATCGTGAACGGAGCGCTGATGAAACGCCACGTTGGCCAACCGATCAGCATCCATTTAAAGGTGGAACGCGCCGACGATGGTTGCAAATCGTTCAGCGGCAAATCGACGGACGGAGTCAATGTCCAGGTGCAACTGTCGGATCCCTTGAATGGTGTTTGCTCAGGATGGGTCGAAGTGATAGGCATTGCGGCTCCCAATGATACGGTTCGCGGAAAGGAGATAATAACGTACTTCAACAGCGGGGAGAAAACGGAAAGTTTCGATGTGGATGGACACAACATGCTGTGCACATTGATGTCGGTTTGCAAGGAACCTTTCTACATGGGTCCACAAATGTAACTCTCTGGATAATATAAG]




>consensus_2029#1
CCGCCCACGCGTCCGTCCAACAGTATTGTTTTAAGCAACATCAGCAAAATGCTACAATTC
GAACGAAGAACGATCGTGAACGGAGCGCTGATGAAACGCCACGTTGGCCAACCGATCAGC
ATCCATTTAAAGGTGGAACGCGCCGACGATGGTTGCAAATCGTTCAGCGGCAAATCGACG
GACGGAGTCAATGTCCAGGTGCAACTGTCGGATCCCTTGAATGGTGTTTGCTCAGGATGG
GTCGAAGTGATAGGCATTGCGGCTCCCAATGATACGGTTCGCGGAAAGGAGATAATAACG
TACTTCAACAGCGGGGAGAAAACGGAAAGTTTCGATGTGGATGGACACAACATGCTGTGC
ACATTGATGTCGGTTTGCAAGGAACCTTTCTACATGGGTCCACAAATGTAACTCTCTGGA
TAATATAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2029#0      CCGCGGCAACATCACCAAACGCAGGAAGATTCACGGCTTTGCTCTGCACGAATCGACAAA 60
consensus_2029#1      ----------------------------------------------------CCGCCCAC 8
                                                                           ** * * 

consensus_2029#0      A-GTGCGTCCAACAGTATTGTTTTAAGCAACATCAGCAAAATGCTACAATTCGAACGAAG 119
consensus_2029#1      GCGTCCGTCCAACAGTATTGTTTTAAGCAACATCAGCAAAATGCTACAATTCGAACGAAG 68
                        ** *******************************************************

consensus_2029#0      AACGATCGTGAACGGAGCGCTGATGAAACGCCACGTTGGCCAACCGATCAGCATCCATTT 179
consensus_2029#1      AACGATCGTGAACGGAGCGCTGATGAAACGCCACGTTGGCCAACCGATCAGCATCCATTT 128
                      ************************************************************

consensus_2029#0      AAAGGTGGAACGCGCCGACGATGGTTGCAAATCGTTCAGCGGCAAATCGACGGACGGTGT 239
consensus_2029#1      AAAGGTGGAACGCGCCGACGATGGTTGCAAATCGTTCAGCGGCAAATCGACGGACGGAGT 188
                      ********************************************************* **

consensus_2029#0      CAATGTCCAGGTGCAACTTTCGGATCCCTTGAATGGTGTTTGCTCAGGATGGGTCGAAGT 299
consensus_2029#1      CAATGTCCAGGTGCAACTGTCGGATCCCTTGAATGGTGTTTGCTCAGGATGGGTCGAAGT 248
                      ****************** *****************************************

consensus_2029#0      GATAGGCATTGCGGCTCCCAATGATACGGTTCGCGGAAAGGAGATAATAACGTACTTCAA 359
consensus_2029#1      GATAGGCATTGCGGCTCCCAATGATACGGTTCGCGGAAAGGAGATAATAACGTACTTCAA 308
                      ************************************************************

consensus_2029#0      CAGCGGGGAGAAAACGGAAAGTTTCGATGTGGATGGACACAACATGCTGTGCACATTGAT 419
consensus_2029#1      CAGCGGGGAGAAAACGGAAAGTTTCGATGTGGATGGACACAACATGCTGTGCACATTGAT 368
                      ************************************************************

consensus_2029#0      GTCGGTTTGCAAGGAACCTTTCTACATGGGTCCACAAATGTAACTCTCTGGATAATATAC 479
consensus_2029#1      GTCGGTTTGCAAGGAACCTTTCTACATGGGTCCACAAATGTAACTCTCTGGATAATATAA 428
                      *********************************************************** 

consensus_2029#0      GATACTTTGAATTT 493
consensus_2029#1      G------------- 429
                      *