cluster # 2032

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 2032 cluster # 2032 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2032#0 length = 645 sequences # 1

consensus_2032#1 length = 382 sequences # 1

consensusID : consensus_2032#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 645
fasta sequence

                              [TCGCCCGAGGNTTAAGTTTGCTTCCTTCGCCCTGTGCGTCTTTTTGCCTGCCGTGTCAGTCACGGCGCAACTGTCGATGCGCGAGCTGGCCGAAATTACCGAAGACTATCGGGTGCGTTTCGACGAGCTGCACGAAGACAAGGAGGACTTCATTCGCCTTGCCCGCGTGCTGATCCGGGCCGAGCTGAAGGGCCTGAACGAGGCGACGCTGGTCAATCTCGGCAACGCTCGCAACGATATCGACGATATCCTGGCCGACACGCGCGAAGAGATTGCCAATGCCATTCTCGAACCGAACGCGAACGAACAGTGCCTGCTCGGACTGGTTGACCGGGTGATTGAGGAGGGCCGTCGTGCCGGCGAGGGCATGAGCTCCTGTGCCGCCGACAAGATCCAGATCAAGGAGGGACTGGGCGATGAGTTCCGAGCGCTAACCAACACGCTGCAGCGCATTGCTACCGCTGCGTCCGAGTACACGCTGTACACGTTCGCCATTCACAACTCGTTCACCGATCCGGAGGAGCACGATGGAGTGGCTGGAGGAGAACTTCGCCAACCAGGTCGAGTTACTGGGACAATGTGGCCGCGCCCGGAAGCGCAGGAAGATCTGGACAATCTGGAAATCAACGCCCGGCACTGGTGGAG]

[+] EMBL AL695741             [TCGCCCGAGGNTTAAGTTTGCTTCCTTCGCCCTGTGCGTCTTTTTGCCTGCCGTGTCAGTCACGGCGCAACTGTCGATGCGCGAGCTGGCCGAAATTACCGAAGACTATCGGGTGCGTTTCGACGAGCTGCACGAAGACAAGGAGGACTTCATTCGCCTTGCCCGCGTGCTGATCCGGGCCGAGCTGAAGGGCCTGAACGAGGCGACGCTGGTCAATCTCGGCAACGCTCGCAACGATATCGACGATATCCTGGCCGACACGCGCGAAGAGATTGCCAATGCCATTCTCGAACCGAACGCGAACGAACAGTGCCTGCTCGGACTGGTTGACCGGGTGATTGAGGAGGGCCGTCGTGCCGGCGAGGGCATGAGCTCCTGTGCCGCCGACAAGATCCAGATCAAGGAGGGACTGGGCGATGAGTTCCGAGCGCTAACCAACACGCTGCAGCGCATTGCTACCGCTGCGTCCGAGTACACGCTGTACACGTTCGCCATTCACAACTCGTTCACCGATCCGGAGGAGCACGATGGAGTGGCTGGAGGAGAACTTCGCCAACCAGGTCGAGTTACTGGGACAATGTGGCCGCGCCCGGAAGCGCAGGAAGATCTGGACAATCTGGAAATCAACGCCCGGCACTGGTGGAG]




>consensus_2032#0
TCGCCCGAGGNTTAAGTTTGCTTCCTTCGCCCTGTGCGTCTTTTTGCCTGCCGTGTCAGT
CACGGCGCAACTGTCGATGCGCGAGCTGGCCGAAATTACCGAAGACTATCGGGTGCGTTT
CGACGAGCTGCACGAAGACAAGGAGGACTTCATTCGCCTTGCCCGCGTGCTGATCCGGGC
CGAGCTGAAGGGCCTGAACGAGGCGACGCTGGTCAATCTCGGCAACGCTCGCAACGATAT
CGACGATATCCTGGCCGACACGCGCGAAGAGATTGCCAATGCCATTCTCGAACCGAACGC
GAACGAACAGTGCCTGCTCGGACTGGTTGACCGGGTGATTGAGGAGGGCCGTCGTGCCGG
CGAGGGCATGAGCTCCTGTGCCGCCGACAAGATCCAGATCAAGGAGGGACTGGGCGATGA
GTTCCGAGCGCTAACCAACACGCTGCAGCGCATTGCTACCGCTGCGTCCGAGTACACGCT
GTACACGTTCGCCATTCACAACTCGTTCACCGATCCGGAGGAGCACGATGGAGTGGCTGG
AGGAGAACTTCGCCAACCAGGTCGAGTTACTGGGACAATGTGGCCGCGCCCGGAAGCGCA
GGAAGATCTGGACAATCTGGAAATCAACGCCCGGCACTGGTGGAG

consensusID : consensus_2032#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 382
fasta sequence

                              [GATCGCCGAGGTTACTAAAACCCCCCGGTTTCGGTTTCGGCTGCTCGACGTGACAAAAAGATGAAAACGTTTGCTTCCTTCGCCCTGTGCGTCCTTTTTGCCGCCGTGTCAGTCACGGCGCAACTGTCGATGCGCGAGCTGGCCGAAATTACCGAAGACTATCGGGTGCGTTTCGACGAGCTGCACGAAGACAAGGAGGACTTCATTCGCCTTGCCCGCGTGCTGATCCGGGCCGAGCTGAAGGGCCTGAACGAGGCGACGCTGGTCAATCTCGGCAACGCTCGCAACGATATCGACGATATCCTGGCCGACACGCGCGAAGAGATTTGCCAATGCCATTCTCGAACCGAAACGCGAACGAACAGTGCCTGCTCGGACTGGT]

[+] EMBL AL695342             [GATCGCCGAGGTTACTAAAACCCCCCGGTTTCGGTTTCGGCTGCTCGACGTGACAAAAAGATGAAAACGTTTGCTTCCTTCGCCCTGTGCGTCCTTTTTGCCGCCGTGTCAGTCACGGCGCAACTGTCGATGCGCGAGCTGGCCGAAATTACCGAAGACTATCGGGTGCGTTTCGACGAGCTGCACGAAGACAAGGAGGACTTCATTCGCCTTGCCCGCGTGCTGATCCGGGCCGAGCTGAAGGGCCTGAACGAGGCGACGCTGGTCAATCTCGGCAACGCTCGCAACGATATCGACGATATCCTGGCCGACACGCGCGAAGAGATTTGCCAATGCCATTCTCGAACCGAAACGCGAACGAACAGTGCCTGCTCGGACTGGT]




>consensus_2032#1
GATCGCCGAGGTTACTAAAACCCCCCGGTTTCGGTTTCGGCTGCTCGACGTGACAAAAAG
ATGAAAACGTTTGCTTCCTTCGCCCTGTGCGTCCTTTTTGCCGCCGTGTCAGTCACGGCG
CAACTGTCGATGCGCGAGCTGGCCGAAATTACCGAAGACTATCGGGTGCGTTTCGACGAG
CTGCACGAAGACAAGGAGGACTTCATTCGCCTTGCCCGCGTGCTGATCCGGGCCGAGCTG
AAGGGCCTGAACGAGGCGACGCTGGTCAATCTCGGCAACGCTCGCAACGATATCGACGAT
ATCCTGGCCGACACGCGCGAAGAGATTTGCCAATGCCATTCTCGAACCGAAACGCGAACG
AACAGTGCCTGCTCGGACTGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2032#0      --------------------------------------------------TCGCCCGAGG 10
consensus_2032#1      GATCGCCGAGGTTACTAAAACCCCCCGGTTTCGGTTTCGGCTGCTCGACGTGACAAAAAG 60
                                                                        *  *   * *

consensus_2032#0      NTTAA---GTTTGCTTCCTTCGCCCTGTGCGTCTTTTTGCCTGCCGTGTCAGTCACGGCG 67
consensus_2032#1      ATGAAAACGTTTGCTTCCTTCGCCCTGTGCGTCCTTTTTGCCGCCGTGTCAGTCACGGCG 120
                       * **   ************************* ****  * ******************

consensus_2032#0      CAACTGTCGATGCGCGAGCTGGCCGAAATTACCGAAGACTATCGGGTGCGTTTCGACGAG 127
consensus_2032#1      CAACTGTCGATGCGCGAGCTGGCCGAAATTACCGAAGACTATCGGGTGCGTTTCGACGAG 180
                      ************************************************************

consensus_2032#0      CTGCACGAAGACAAGGAGGACTTCATTCGCCTTGCCCGCGTGCTGATCCGGGCCGAGCTG 187
consensus_2032#1      CTGCACGAAGACAAGGAGGACTTCATTCGCCTTGCCCGCGTGCTGATCCGGGCCGAGCTG 240
                      ************************************************************

consensus_2032#0      AAGGGCCTGAACGAGGCGACGCTGGTCAATCTCGGCAACGCTCGCAACGATATCGACGAT 247
consensus_2032#1      AAGGGCCTGAACGAGGCGACGCTGGTCAATCTCGGCAACGCTCGCAACGATATCGACGAT 300
                      ************************************************************

consensus_2032#0      ATCCTGGCCGACACGCGCGAAGAGATT-GCCAATGCCATTCTCGAACCGAA-CGCGAACG 305
consensus_2032#1      ATCCTGGCCGACACGCGCGAAGAGATTTGCCAATGCCATTCTCGAACCGAAACGCGAACG 360
                      *************************** *********************** ********

consensus_2032#0      AACAGTGCCTGCTCGGACTGGTTGACCGGGTGATTGAGGAGGGCCGTCGTGCCGGCGAGG 365
consensus_2032#1      AACAGTGCCTGCTCGGACTGGT-------------------------------------- 382
                      **********************                                      

consensus_2032#0      GCATGAGCTCCTGTGCCGCCGACAAGATCCAGATCAAGGAGGGACTGGGCGATGAGTTCC 425
consensus_2032#1      ------------------------------------------------------------
                                                                                  

consensus_2032#0      GAGCGCTAACCAACACGCTGCAGCGCATTGCTACCGCTGCGTCCGAGTACACGCTGTACA 485
consensus_2032#1      ------------------------------------------------------------
                                                                                  

consensus_2032#0      CGTTCGCCATTCACAACTCGTTCACCGATCCGGAGGAGCACGATGGAGTGGCTGGAGGAG 545
consensus_2032#1      ------------------------------------------------------------
                                                                                  

consensus_2032#0      AACTTCGCCAACCAGGTCGAGTTACTGGGACAATGTGGCCGCGCCCGGAAGCGCAGGAAG 605
consensus_2032#1      ------------------------------------------------------------
                                                                                  

consensus_2032#0      ATCTGGACAATCTGGAAATCAACGCCCGGCACTGGTGGAG 645
consensus_2032#1      ----------------------------------------