cluster # 2034

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Anopheles gambiae
cluster # 2034 cluster # 2034 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2034#0 length = 832 sequences # 1

consensus_2034#1 length = 567 sequences # 1

consensusID : consensus_2034#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 832
fasta sequence

                              [ACCGTCGGAGAACTCAGCGCAGGAAGTGATGGATGAGGCTGAACCTTCTTCGTCATCTGTTGTGCCGTCGGAAGTTACCAGCTCGGATCCAGCCAACACTCAGGAAGAGGAGTCGAACGAGGTTGAAGTTATGGATGATGTCACAACACAGCAGGAAGAACAGCAACAGTCGGAACAGGAACAAACAGTGTCCTCAGAACCTGCCCCTTCCATTGAGTACTCCGATGCCACACCTCAGGATGAAGTTGTCGAAGCGGAACCACCTGTAAACACCGAAACGGAAGCTGAAAGTACCCCGACCGATCCGGAACCGTCCGCTACCGTGGAGCTGGAAAACGAAACACAGCACCAAGCCGACTCGCTGATCAATGCCGTACAGGCGGTAGAAGAGCTAGAACCTATCGTACACGAGCTCGCTGCAGAGACAGAAGAACTGAAACCACTCGTTGCCGAGCTAGTGCAAGATCCCGCTGTTCCAGCTCCTAGCCAAGAAGACAACGAACTGCTTGCACCCGAATCGGACACCAGCGCAACAACCGATATGGAAGCGCCACAAGCGGCATCGGATGCGTCATCCAGCGATAGTGAACCGACCAGCGACGCAGCGACGATGGAAAGCGATGCGGTGAACGAACTATCGCCCGAGATGGTGTTGAGCTCGGCCGTACCGGCTGATGATTCATCGAACACGATCGATACGGTCAGTGTGGAGGCGGACGAAACGGCACAGCCCGCCGTCGCACCGGAAACGATCGATGACGTCCAGCAGACGGAAGGTGAAGCAGCCACACCCGACGCACCGGAACGACCNATGGGAAAGCCCCGCGATCGT]

[+] EMBL BX621279             [ACCGTCGGAGAACTCAGCGCAGGAAGTGATGGATGAGGCTGAACCTTCTTCGTCATCTGTTGTGCCGTCGGAAGTTACCAGCTCGGATCCAGCCAACACTCAGGAAGAGGAGTCGAACGAGGTTGAAGTTATGGATGATGTCACAACACAGCAGGAAGAACAGCAACAGTCGGAACAGGAACAAACAGTGTCCTCAGAACCTGCCCCTTCCATTGAGTACTCCGATGCCACACCTCAGGATGAAGTTGTCGAAGCGGAACCACCTGTAAACACCGAAACGGAAGCTGAAAGTACCCCGACCGATCCGGAACCGTCCGCTACCGTGGAGCTGGAAAACGAAACACAGCACCAAGCCGACTCGCTGATCAATGCCGTACAGGCGGTAGAAGAGCTAGAACCTATCGTACACGAGCTCGCTGCAGAGACAGAAGAACTGAAACCACTCGTTGCCGAGCTAGTGCAAGATCCCGCTGTTCCAGCTCCTAGCCAAGAAGACAACGAACTGCTTGCACCCGAATCGGACACCAGCGCAACAACCGATATGGAAGCGCCACAAGCGGCATCGGATGCGTCATCCAGCGATAGTGAACCGACCAGCGACGCAGCGACGATGGAAAGCGATGCGGTGAACGAACTATCGCCCGAGATGGTGTTGAGCTCGGCCGTACCGGCTGATGATTCATCGAACACGATCGATACGGTCAGTGTGGAGGCGGACGAAACGGCACAGCCCGCCGTCGCACCGGAAACGATCGATGACGTCCAGCAGACGGAAGGTGAAGCAGCCACACCCGACGCACCGGAACGACCNATGGGAAAGCCCCGCGATCGT]




>consensus_2034#0
ACCGTCGGAGAACTCAGCGCAGGAAGTGATGGATGAGGCTGAACCTTCTTCGTCATCTGT
TGTGCCGTCGGAAGTTACCAGCTCGGATCCAGCCAACACTCAGGAAGAGGAGTCGAACGA
GGTTGAAGTTATGGATGATGTCACAACACAGCAGGAAGAACAGCAACAGTCGGAACAGGA
ACAAACAGTGTCCTCAGAACCTGCCCCTTCCATTGAGTACTCCGATGCCACACCTCAGGA
TGAAGTTGTCGAAGCGGAACCACCTGTAAACACCGAAACGGAAGCTGAAAGTACCCCGAC
CGATCCGGAACCGTCCGCTACCGTGGAGCTGGAAAACGAAACACAGCACCAAGCCGACTC
GCTGATCAATGCCGTACAGGCGGTAGAAGAGCTAGAACCTATCGTACACGAGCTCGCTGC
AGAGACAGAAGAACTGAAACCACTCGTTGCCGAGCTAGTGCAAGATCCCGCTGTTCCAGC
TCCTAGCCAAGAAGACAACGAACTGCTTGCACCCGAATCGGACACCAGCGCAACAACCGA
TATGGAAGCGCCACAAGCGGCATCGGATGCGTCATCCAGCGATAGTGAACCGACCAGCGA
CGCAGCGACGATGGAAAGCGATGCGGTGAACGAACTATCGCCCGAGATGGTGTTGAGCTC
GGCCGTACCGGCTGATGATTCATCGAACACGATCGATACGGTCAGTGTGGAGGCGGACGA
AACGGCACAGCCCGCCGTCGCACCGGAAACGATCGATGACGTCCAGCAGACGGAAGGTGA
AGCAGCCACACCCGACGCACCGGAACGACCNATGGGAAAGCCCCGCGATCGT

consensusID : consensus_2034#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 567
fasta sequence

                              [CCGAGGTTAAGTCGGAACAGGAACAAACAGTGTCTCAGAACTGNCCCTTCCATTGAGTACTCCGATGCCACACCTCAGTGATGAAGTTGTCGAAGCGGAACCACCTGTAAACACCTGAAACTGGAAGCTGAAAGTACCCCTGACCTGATCCTGTGAACCTGTCCTGCTACCTGTGTGATGCTGGAAAACGAAACACAGCACCAAGCCTGACTCGCTGATCAATGCCTGTACAGTGCTGTGTAGAAGAGCTAGAACCTATCTGTACACTGAGCTCGCTGCAGAGACATGAAGAACTTGAAACCACTCTGTTGCCTGAGCTAGTTGCAATGATCCCTGCTGTTCCAGCATCCTAGCCAAGAACGACAACTGAACTGNCTTGCAACCCGAATCGGACACCAGCNGCAACAACCGATATGGAAGCTGCCACAAGCGGCATCGGATGCGTCATCCAGCGATAGTGAACCGACCAGCGACGCAGCGACGATGGAAAGCGATGCTGGTGAACGAACTATCGCCCGAGATGGTGTTNGAGGCTCGGCGTACCTGGCTGATGATTCATCGAACACG]

[+] EMBL AL695344             [CCGAGGTTAAGTCGGAACAGGAACAAACAGTGTCTCAGAACTGNCCCTTCCATTGAGTACTCCGATGCCACACCTCAGTGATGAAGTTGTCGAAGCGGAACCACCTGTAAACACCTGAAACTGGAAGCTGAAAGTACCCCTGACCTGATCCTGTGAACCTGTCCTGCTACCTGTGTGATGCTGGAAAACGAAACACAGCACCAAGCCTGACTCGCTGATCAATGCCTGTACAGTGCTGTGTAGAAGAGCTAGAACCTATCTGTACACTGAGCTCGCTGCAGAGACATGAAGAACTTGAAACCACTCTGTTGCCTGAGCTAGTTGCAATGATCCCTGCTGTTCCAGCATCCTAGCCAAGAACGACAACTGAACTGNCTTGCAACCCGAATCGGACACCAGCNGCAACAACCGATATGGAAGCTGCCACAAGCGGCATCGGATGCGTCATCCAGCGATAGTGAACCGACCAGCGACGCAGCGACGATGGAAAGCGATGCTGGTGAACGAACTATCGCCCGAGATGGTGTTNGAGGCTCGGCGTACCTGGCTGATGATTCATCGAACACG]




>consensus_2034#1
CCGAGGTTAAGTCGGAACAGGAACAAACAGTGTCTCAGAACTGNCCCTTCCATTGAGTAC
TCCGATGCCACACCTCAGTGATGAAGTTGTCGAAGCGGAACCACCTGTAAACACCTGAAA
CTGGAAGCTGAAAGTACCCCTGACCTGATCCTGTGAACCTGTCCTGCTACCTGTGTGATG
CTGGAAAACGAAACACAGCACCAAGCCTGACTCGCTGATCAATGCCTGTACAGTGCTGTG
TAGAAGAGCTAGAACCTATCTGTACACTGAGCTCGCTGCAGAGACATGAAGAACTTGAAA
CCACTCTGTTGCCTGAGCTAGTTGCAATGATCCCTGCTGTTCCAGCATCCTAGCCAAGAA
CGACAACTGAACTGNCTTGCAACCCGAATCGGACACCAGCNGCAACAACCGATATGGAAG
CTGCCACAAGCGGCATCGGATGCGTCATCCAGCGATAGTGAACCGACCAGCGACGCAGCG
ACGATGGAAAGCGATGCTGGTGAACGAACTATCGCCCGAGATGGTGTTNGAGGCTCGGCG
TACCTGGCTGATGATTCATCGAACACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2034#0      ACCGTCGGAGAACTCAGCGCAGGAAGTGATGGATGAGGCTGAACCTTCTTCGTCATCTGT 60
consensus_2034#1      ------------------------------------------------------------
                                                                                  

consensus_2034#0      TGTGCCGTCGGAAGTTACCAGCTCGGATCCAGCCAACACTCAGGAAGAGGAGTCGAACGA 120
consensus_2034#1      ------------------------------------------------------------
                                                                                  

consensus_2034#0      GGTTGAAGTTATGGATGATGTCACAACACAGCAGGAAGAACAGCAACAGTCGGAACAGGA 180
consensus_2034#1      --------------------------------------CCGAGGTTAAGTCGGAACAGGA 22
                                                               **    *************

consensus_2034#0      ACAAACAGTGTCCTCAGAACCTGCCCCTTCCATTGAGTACTCCGATGCCACACCTCAG-G 239
consensus_2034#1      ACAAACAGTGTC-TCAGAAC-TGNCCCTTCCATTGAGTACTCCGATGCCACACCTCAGTG 80
                      ************ ******* ** ********************************** *

consensus_2034#0      ATGAAGTTGTCGAAGCGGAACCACCTGTAAACACC-GAAAC-GGAAGCTGAAAGTACCCC 297
consensus_2034#1      ATGAAGTTGTCGAAGCGGAACCACCTGTAAACACCTGAAACTGGAAGCTGAAAGTACCCC 140
                      *********************************** ***** ******************

consensus_2034#0      -GACC-GATCC---GGAACCGTCC-GCTACC---GTGGAGCTGGAAAACGAAACACAGCA 348
consensus_2034#1      TGACCTGATCCTGTGAACCTGTCCTGCTACCTGTGTGATGCTGGAAAACGAAACACAGCA 200
                       **** *****   * * * **** ******   ***  *********************

consensus_2034#0      CCAAGCC-GACTCGCTGATCAATGCC-GTACAG-GCGGT--AGAAGAGCTAGAACCTATC 403
consensus_2034#1      CCAAGCCTGACTCGCTGATCAATGCCTGTACAGTGCTGTGTAGAAGAGCTAGAACCTATC 260
                      ******* ****************** ****** ** **  *******************

consensus_2034#0      -GTACAC-GAGCTCGCTGCAGAGACA-GAAGAACT-GAAACCACTC-GTTGCC-GAGCTA 457
consensus_2034#1      TGTACACTGAGCTCGCTGCAGAGACATGAAGAACTTGAAACCACTCTGTTGCCTGAGCTA 320
                       ****** ****************** ******** ********** ****** ******

consensus_2034#0      GT-GCAA-GATCCC-GCTGTTCCAGC-TCCTAGCCAAGAA-GACAAC-GAACTGC-TTGC 510
consensus_2034#1      GTTGCAATGATCCCTGCTGTTCCAGCATCCTAGCCAAGAACGACAACTGAACTGNCTTGC 380
                      ** **** ****** *********** ************* ****** ******  ****

consensus_2034#0      A-CCCGAATCGGACACCAGCG-CAACAACCGATATGGAAGC-GCCACAAGCGGCATCGGA 567
consensus_2034#1      AACCCGAATCGGACACCAGCNGCAACAACCGATATGGAAGCTGCCACAAGCGGCATCGGA 440
                      * ******************  ******************* ******************

consensus_2034#0      TGCGTCATCCAGCGATAGTGAACCGACCAGCGACGCAGCGACGATGGAAAGCGATGC-GG 626
consensus_2034#1      TGCGTCATCCAGCGATAGTGAACCGACCAGCGACGCAGCGACGATGGAAAGCGATGCTGG 500
                      ********************************************************* **

consensus_2034#0      TGAACGAACTATCGCCCGAGATGGTGTTGA--GCTCGGCCGTACCGGCTGATGATTCATC 684
consensus_2034#1      TGAACGAACTATCGCCCGAGATGGTGTTNGAGGCTCGGCGTACCTGGCTGATGATTCATC 560
                      ****************************    *******    * ***************

consensus_2034#0      GAACACGATCGATACGGTCAGTGTGGAGGCGGACGAAACGGCACAGCCCGCCGTCGCACC 744
consensus_2034#1      GAACACG----------------------------------------------------- 567
                      *******                                                     

consensus_2034#0      GGAAACGATCGATGACGTCCAGCAGACGGAAGGTGAAGCAGCCACACCCGACGCACCGGA 804
consensus_2034#1      ------------------------------------------------------------
                                                                                  

consensus_2034#0      ACGACCNATGGGAAAGCCCCGCGATCGT 832
consensus_2034#1      ----------------------------