cluster # 2049

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 2049 cluster # 2049 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2049#0 length = 618 sequences # 1

consensus_2049#1 length = 510 sequences # 1

consensusID : consensus_2049#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 618
fasta sequence

                              [CCGCCCACGCGTCCGCGAAATCGCTCGTCGCAGCCGCTCGCAGTGTACAACGATCCGCGTTTAATGCCTCGAAATGAACGAAATCAACCACAAAACCGTGTTCGTGCTGGACCACACGCCCTACTTCGGCATATCGTGCGAAAGTCCGATCGACTGTGACTTTATCAAGAGCAAGGTGGCGGTCCCGCCGATCAGCAAGAGCCTGTGGACGTGCGCGGTGGAAGCGTCGGTCGAGTACTGCCGGATCGCGTACGACCTCTTTCCGGTGGGCAAGCTGATCCGGTTCGTCGTGAGCGATACGGCCGCCCACATCGTCAACACGTGGAACACGAACACGCAGAGCCTGACGCACATACTGAACGCGATGTCGATGGTGGGTGTGCCGCCGCGCCAAACGCAAGCGTCCGACTACTCGGTGATACACGGGCTGCGGGCCGCGATCGAGGCGCTGGCCGAGCCGACCGAGTTCCAGAAGGAGCAGCTGGCGGTGCACGCCAAGAGCGACTGCTTCAAGCTGGTCAACCGGGGCCGGGTGATCTGCATCACGTCGGCGCGCGATGACGCGAGCATGAAGAGCCTGGAGGACATCTTCCGCACCGTGCTGGTGCAGCAGAACGC]

[+] EMBL BM639896             [CCGCCCACGCGTCCGCGAAATCGCTCGTCGCAGCCGCTCGCAGTGTACAACGATCCGCGTTTAATGCCTCGAAATGAACGAAATCAACCACAAAACCGTGTTCGTGCTGGACCACACGCCCTACTTCGGCATATCGTGCGAAAGTCCGATCGACTGTGACTTTATCAAGAGCAAGGTGGCGGTCCCGCCGATCAGCAAGAGCCTGTGGACGTGCGCGGTGGAAGCGTCGGTCGAGTACTGCCGGATCGCGTACGACCTCTTTCCGGTGGGCAAGCTGATCCGGTTCGTCGTGAGCGATACGGCCGCCCACATCGTCAACACGTGGAACACGAACACGCAGAGCCTGACGCACATACTGAACGCGATGTCGATGGTGGGTGTGCCGCCGCGCCAAACGCAAGCGTCCGACTACTCGGTGATACACGGGCTGCGGGCCGCGATCGAGGCGCTGGCCGAGCCGACCGAGTTCCAGAAGGAGCAGCTGGCGGTGCACGCCAAGAGCGACTGCTTCAAGCTGGTCAACCGGGGCCGGGTGATCTGCATCACGTCGGCGCGCGATGACGCGAGCATGAAGAGCCTGGAGGACATCTTCCGCACCGTGCTGGTGCAGCAGAACGC]




>consensus_2049#0
CCGCCCACGCGTCCGCGAAATCGCTCGTCGCAGCCGCTCGCAGTGTACAACGATCCGCGT
TTAATGCCTCGAAATGAACGAAATCAACCACAAAACCGTGTTCGTGCTGGACCACACGCC
CTACTTCGGCATATCGTGCGAAAGTCCGATCGACTGTGACTTTATCAAGAGCAAGGTGGC
GGTCCCGCCGATCAGCAAGAGCCTGTGGACGTGCGCGGTGGAAGCGTCGGTCGAGTACTG
CCGGATCGCGTACGACCTCTTTCCGGTGGGCAAGCTGATCCGGTTCGTCGTGAGCGATAC
GGCCGCCCACATCGTCAACACGTGGAACACGAACACGCAGAGCCTGACGCACATACTGAA
CGCGATGTCGATGGTGGGTGTGCCGCCGCGCCAAACGCAAGCGTCCGACTACTCGGTGAT
ACACGGGCTGCGGGCCGCGATCGAGGCGCTGGCCGAGCCGACCGAGTTCCAGAAGGAGCA
GCTGGCGGTGCACGCCAAGAGCGACTGCTTCAAGCTGGTCAACCGGGGCCGGGTGATCTG
CATCACGTCGGCGCGCGATGACGCGAGCATGAAGAGCCTGGAGGACATCTTCCGCACCGT
GCTGGTGCAGCAGAACGC

consensusID : consensus_2049#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 510
fasta sequence

                              [CCGTGCCCGCAGTGTACAACGATCCGCGTTTAATGCCTCGAAATGAACGAAATCAACCACAAAACCGTGTTCGTGCTGGACCACACGCCCTACTTCGGCATATCGTGCGAAAGTCCGATCGACTGTGACTTTATAAAGAGCAAGGTGGCGGTCCCGCCGATCAGCAAGAGCCTGTGGACGTGCGCGGTGGAAGCGTCGGTCGAGTACTGCCGGATCGCGTACGACCTCTTTCCGGTGGGCAAGCTGATCCGGTTCGTCGTGAGCGATACGGCCGCCCACATCGTCAACACGTGGAACACGAACACGCAGAGCCTGACGCACATACTGAACGCGATGTCGATGGTGGGTGTGCCGCCGCGCCAAACGCAAGCGTCCGACTATCGGATCAAGGATTTCGGCGCGCTGATGCAGCAGCACCGGCTGGTGCCGCTGAAACCGCTGCCCGAGCGGCAACCGGACGAGCATCTGCAGAAGATGCGCGGCAGGCTGGCGCGCAACTCGCGCTACTGG]

[+] EMBL BM583452             [CCGTGCCCGCAGTGTACAACGATCCGCGTTTAATGCCTCGAAATGAACGAAATCAACCACAAAACCGTGTTCGTGCTGGACCACACGCCCTACTTCGGCATATCGTGCGAAAGTCCGATCGACTGTGACTTTATAAAGAGCAAGGTGGCGGTCCCGCCGATCAGCAAGAGCCTGTGGACGTGCGCGGTGGAAGCGTCGGTCGAGTACTGCCGGATCGCGTACGACCTCTTTCCGGTGGGCAAGCTGATCCGGTTCGTCGTGAGCGATACGGCCGCCCACATCGTCAACACGTGGAACACGAACACGCAGAGCCTGACGCACATACTGAACGCGATGTCGATGGTGGGTGTGCCGCCGCGCCAAACGCAAGCGTCCGACTATCGGATCAAGGATTTCGGCGCGCTGATGCAGCAGCACCGGCTGGTGCCGCTGAAACCGCTGCCCGAGCGGCAACCGGACGAGCATCTGCAGAAGATGCGCGGCAGGCTGGCGCGCAACTCGCGCTACTGG]




>consensus_2049#1
CCGTGCCCGCAGTGTACAACGATCCGCGTTTAATGCCTCGAAATGAACGAAATCAACCAC
AAAACCGTGTTCGTGCTGGACCACACGCCCTACTTCGGCATATCGTGCGAAAGTCCGATC
GACTGTGACTTTATAAAGAGCAAGGTGGCGGTCCCGCCGATCAGCAAGAGCCTGTGGACG
TGCGCGGTGGAAGCGTCGGTCGAGTACTGCCGGATCGCGTACGACCTCTTTCCGGTGGGC
AAGCTGATCCGGTTCGTCGTGAGCGATACGGCCGCCCACATCGTCAACACGTGGAACACG
AACACGCAGAGCCTGACGCACATACTGAACGCGATGTCGATGGTGGGTGTGCCGCCGCGC
CAAACGCAAGCGTCCGACTATCGGATCAAGGATTTCGGCGCGCTGATGCAGCAGCACCGG
CTGGTGCCGCTGAAACCGCTGCCCGAGCGGCAACCGGACGAGCATCTGCAGAAGATGCGC
GGCAGGCTGGCGCGCAACTCGCGCTACTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2049#0      CCGCCCACGCGTCCGCGAAATCGCTCGTCGCAGCCGCTCGCAGTGTACAACGATCCGCGT 60
consensus_2049#1      ------------------------------CCGT-GCCCGCAGTGTACAACGATCCGCGT 29
                                                    * *  ** **********************

consensus_2049#0      TTAATGCCTCGAAATGAACGAAATCAACCACAAAACCGTGTTCGTGCTGGACCACACGCC 120
consensus_2049#1      TTAATGCCTCGAAATGAACGAAATCAACCACAAAACCGTGTTCGTGCTGGACCACACGCC 89
                      ************************************************************

consensus_2049#0      CTACTTCGGCATATCGTGCGAAAGTCCGATCGACTGTGACTTTATCAAGAGCAAGGTGGC 180
consensus_2049#1      CTACTTCGGCATATCGTGCGAAAGTCCGATCGACTGTGACTTTATAAAGAGCAAGGTGGC 149
                      ********************************************* **************

consensus_2049#0      GGTCCCGCCGATCAGCAAGAGCCTGTGGACGTGCGCGGTGGAAGCGTCGGTCGAGTACTG 240
consensus_2049#1      GGTCCCGCCGATCAGCAAGAGCCTGTGGACGTGCGCGGTGGAAGCGTCGGTCGAGTACTG 209
                      ************************************************************

consensus_2049#0      CCGGATCGCGTACGACCTCTTTCCGGTGGGCAAGCTGATCCGGTTCGTCGTGAGCGATAC 300
consensus_2049#1      CCGGATCGCGTACGACCTCTTTCCGGTGGGCAAGCTGATCCGGTTCGTCGTGAGCGATAC 269
                      ************************************************************

consensus_2049#0      GGCCGCCCACATCGTCAACACGTGGAACACGAACACGCAGAGCCTGACGCACATACTGAA 360
consensus_2049#1      GGCCGCCCACATCGTCAACACGTGGAACACGAACACGCAGAGCCTGACGCACATACTGAA 329
                      ************************************************************

consensus_2049#0      CGCGATGTCGATGGTGGGTGTGCCGCCGCGCCAAACGCAAGCGTCCGACTACTCGGTGAT 420
consensus_2049#1      CGCGATGTCGATGGTGGGTGTGCCGCCGCGCCAAACGCAAGCGTCCGACTATCGGAT--- 386
                      ***************************************************   * *   

consensus_2049#0      ACACGGGCTGCGGGCCGCGATCGAGGCGCTGGCCGAGCCGACCGAGTTCCAGAAGGAGCA 480
consensus_2049#1      -CAAGGATT-----------TCGGCGCGCTGATGCAGC------AGCACCGGCTGGTGCC 428
                       ** **  *           ***  ******    ***      **  ** *  ** ** 

consensus_2049#0      GCTGGCGGTGCACGCCAAGAGCGACTGCTTCAAGCTGGTCAACCGGGGCCGGGTGATCTG 540
consensus_2049#1      GCTGAAACCGCTGCCC--GAGCGGC-------AACCGGACGAGCATCTGCAGAAGATGCG 479
                      ****     **   **  ***** *       * * ** * * *     * *  ***  *

consensus_2049#0      CATCACGTCGGCGCGCGATGACGCGAGCATGAAGAGCCTGGAGGACATCTTCCGCACCGT 600
consensus_2049#1      CGGCAGGCTGGCGCGCAACT-CGCGCTACTGG---------------------------- 510
                      *  ** *  ******* *   ****    **                             

consensus_2049#0      GCTGGTGCAGCAGAACGC 618
consensus_2049#1      ------------------