cluster # 2053

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Anopheles gambiae
cluster # 2053 cluster # 2053 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2053#0 length = 662 sequences # 1

consensus_2053#1 length = 464 sequences # 1

consensusID : consensus_2053#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 662
fasta sequence

                              [CCGCCCACGCGTCCGACCGAGCCTATACGAGATACATTGCCGTGTCGTCTACCGCGAACAAATCTCTGGCCACACAAACGCACACCCACACGAGAGGCTCGGTACAAGAAAGTGAATCGAAACCCGTCGCACCGAGCACTAGCAGCAGCAGAAACTTTCCATTTCTACTGTGTCAACGGTGTTCTAGTCGATCTCCTTCTGGTTCCTGCGATGGATCTCTTCCTGTTGTGATTGTTGCTGACTGTTGTGTGTCAATGTTTTCGAAACCGAACCACAACCTTATTTCCACGGAGTTGGTCGTCGTGTTGCGAAAGAGTCGAAAGTTACGAGCAGATCCTTAAAAGTACCGCCTAGTAGCACTTTACCACCTTACCACAAAAAAAACACCGGAAGTATTCACTCTCTGATGGCTAAGAGCAACCACAATCAATTAGGATGCTACGTCATGATCGCACTTTTCGTGGCCGGAAAGGTGCAGTGCCTACCGGACCGAGCGGAACCAGCGGGACAGCTGACGACGGTCCCGGAGCGGGTCGATGGATCGACGGAATCCACTACAGACGACGTTGCTGCCACGGTCACCGAAGACGATCTCTACTTAGTAGATACCACCACCACCACGCAGCAGAGCATCAAAACGACGACACATGATCGGGTCTTGT]

[+] EMBL BM601524             [CCGCCCACGCGTCCGACCGAGCCTATACGAGATACATTGCCGTGTCGTCTACCGCGAACAAATCTCTGGCCACACAAACGCACACCCACACGAGAGGCTCGGTACAAGAAAGTGAATCGAAACCCGTCGCACCGAGCACTAGCAGCAGCAGAAACTTTCCATTTCTACTGTGTCAACGGTGTTCTAGTCGATCTCCTTCTGGTTCCTGCGATGGATCTCTTCCTGTTGTGATTGTTGCTGACTGTTGTGTGTCAATGTTTTCGAAACCGAACCACAACCTTATTTCCACGGAGTTGGTCGTCGTGTTGCGAAAGAGTCGAAAGTTACGAGCAGATCCTTAAAAGTACCGCCTAGTAGCACTTTACCACCTTACCACAAAAAAAACACCGGAAGTATTCACTCTCTGATGGCTAAGAGCAACCACAATCAATTAGGATGCTACGTCATGATCGCACTTTTCGTGGCCGGAAAGGTGCAGTGCCTACCGGACCGAGCGGAACCAGCGGGACAGCTGACGACGGTCCCGGAGCGGGTCGATGGATCGACGGAATCCACTACAGACGACGTTGCTGCCACGGTCACCGAAGACGATCTCTACTTAGTAGATACCACCACCACCACGCAGCAGAGCATCAAAACGACGACACATGATCGGGTCTTGT]




>consensus_2053#0
CCGCCCACGCGTCCGACCGAGCCTATACGAGATACATTGCCGTGTCGTCTACCGCGAACA
AATCTCTGGCCACACAAACGCACACCCACACGAGAGGCTCGGTACAAGAAAGTGAATCGA
AACCCGTCGCACCGAGCACTAGCAGCAGCAGAAACTTTCCATTTCTACTGTGTCAACGGT
GTTCTAGTCGATCTCCTTCTGGTTCCTGCGATGGATCTCTTCCTGTTGTGATTGTTGCTG
ACTGTTGTGTGTCAATGTTTTCGAAACCGAACCACAACCTTATTTCCACGGAGTTGGTCG
TCGTGTTGCGAAAGAGTCGAAAGTTACGAGCAGATCCTTAAAAGTACCGCCTAGTAGCAC
TTTACCACCTTACCACAAAAAAAACACCGGAAGTATTCACTCTCTGATGGCTAAGAGCAA
CCACAATCAATTAGGATGCTACGTCATGATCGCACTTTTCGTGGCCGGAAAGGTGCAGTG
CCTACCGGACCGAGCGGAACCAGCGGGACAGCTGACGACGGTCCCGGAGCGGGTCGATGG
ATCGACGGAATCCACTACAGACGACGTTGCTGCCACGGTCACCGAAGACGATCTCTACTT
AGTAGATACCACCACCACCACGCAGCAGAGCATCAAAACGACGACACATGATCGGGTCTT
GT

consensusID : consensus_2053#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 464
fasta sequence

                              [AGGCAGAATCGNCACGAGGTGCATTTTAGCACTTTTCGTGGCGGAAAGGTGCAGTGCCTACCGGACCGAGTGGAACCAGCGGGACAACTGACGACGGTCCCGGAGCGGGTCGATGGACCGACGGAATCCACTACAGAGCATCAAGACGACGACACATGATCGGGTCCTGTTTACCGATACGCCTGTCATGGACGCTATTACGATCGTATGGTACCTGGCCACCTTTATCGCGCTGATATCGTTCTTCCTGGTGATGGCCTGTGCCGATCACAACCGCTGCCGGTCGCGCAAACCATCGTCCAGCGAGCTGACTCCACCGCCGACACCGGCTCCCTCCTACCATCACTTTGCACCGCCCAGCTACGATTCGCTCGTGTTCGAGAAGGATAACGACAGCGATATTCATCATCCCGTACGATACTCGCATCGATGGTGCCCATCACGCACGGAGCGTTGACGATCTG]

[+] EMBL BX468535             [AGGCAGAATCGNCACGAGGTGCATTTTAGCACTTTTCGTGGCGGAAAGGTGCAGTGCCTACCGGACCGAGTGGAACCAGCGGGACAACTGACGACGGTCCCGGAGCGGGTCGATGGACCGACGGAATCCACTACAGAGCATCAAGACGACGACACATGATCGGGTCCTGTTTACCGATACGCCTGTCATGGACGCTATTACGATCGTATGGTACCTGGCCACCTTTATCGCGCTGATATCGTTCTTCCTGGTGATGGCCTGTGCCGATCACAACCGCTGCCGGTCGCGCAAACCATCGTCCAGCGAGCTGACTCCACCGCCGACACCGGCTCCCTCCTACCATCACTTTGCACCGCCCAGCTACGATTCGCTCGTGTTCGAGAAGGATAACGACAGCGATATTCATCATCCCGTACGATACTCGCATCGATGGTGCCCATCACGCACGGAGCGTTGACGATCTG]




>consensus_2053#1
AGGCAGAATCGNCACGAGGTGCATTTTAGCACTTTTCGTGGCGGAAAGGTGCAGTGCCTA
CCGGACCGAGTGGAACCAGCGGGACAACTGACGACGGTCCCGGAGCGGGTCGATGGACCG
ACGGAATCCACTACAGAGCATCAAGACGACGACACATGATCGGGTCCTGTTTACCGATAC
GCCTGTCATGGACGCTATTACGATCGTATGGTACCTGGCCACCTTTATCGCGCTGATATC
GTTCTTCCTGGTGATGGCCTGTGCCGATCACAACCGCTGCCGGTCGCGCAAACCATCGTC
CAGCGAGCTGACTCCACCGCCGACACCGGCTCCCTCCTACCATCACTTTGCACCGCCCAG
CTACGATTCGCTCGTGTTCGAGAAGGATAACGACAGCGATATTCATCATCCCGTACGATA
CTCGCATCGATGGTGCCCATCACGCACGGAGCGTTGACGATCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2053#0      CCGCCCACGCGTCCGACCGAGCCTATACGAGATACATTGCCGTGTCGTCTACCGCGAACA 60
consensus_2053#1      ------------------------------------------------------------
                                                                                  

consensus_2053#0      AATCTCTGGCCACACAAACGCACACCCACACGAGAGGCTCGGTACAAGAAAGTGAATCGA 120
consensus_2053#1      ------------------------------------------------AGGCAGAATCGN 12
                                                                      *    ****** 

consensus_2053#0      AACCCGTCGCACCG-AGCACTAGCAGCAGCAGAAACTTTCCATTTCTACTGTGTCAACGG 179
consensus_2053#1      CACGAGGTGCATTTTAGCACTTTTCGTGGCGGAAAGGTGCAGTGCCTACCGGACCGA-GT 71
                       **  *  ***    ******    *  ** ****  * *  *  **** *   * * * 

consensus_2053#0      TGTTCTAGTCGATCTCCTTCTGGT--TCCTGCGATGGATCTCTTCCTGTTGTGATTGTTG 237
consensus_2053#1      GGAACCAGCGGGACAACTGACGACGGTCCCGGAGCGGGTC----GATGGACCGACGGA-A 126
                       *  * **  *  *  **   *    *** *    ** **      **    **  *   

consensus_2053#0      CTGACTGTTGTGTGTCAATGTTTTCGAAACCGAACCACAACCTTATTTCCACGGAGTTGG 297
consensus_2053#1      TCCACTACAGAGCATCAA-GACGACGACACATGATCGGGTCCTGTTTACCGATACGCCTG 185
                         ***   * *  **** *    *** **   * *    ***  ** **     *   *

consensus_2053#0      TCGTCG----TGTTGCGAAAGAGTCGAAAGTTACGAGCAGATCCTTAAAAGTACCG--CC 351
consensus_2053#1      TCATGGACGCTATTACGATCGTATGGTACCTGGCCACCTTTATCGCGCTGATATCGTTCT 245
                      ** * *    * ** ***  *  * * *  *  * * *     *       ** **  * 

consensus_2053#0      TAGTAGCACTTTACCACCTTACCACAAAAAAAACACCGGAAGTATTCACTCTCTGATGGC 411
consensus_2053#1      TCCTGGTGATGGCCTGTGCCGAT-CACAACCGCTGCCGGTCGCGCAAACCATCGTCCAGC 304
                      *  * *   *   *          ** **      ****  *     **  **     **

consensus_2053#0      TAAGAGCAACCACAATCAATTAGGATGCTACGTCATGATCGCACTTTTCGTGGCCGGAAA 471
consensus_2053#1      GAGCTGACTCCACCGCCGACACCG--GCTCCCTCCTACCATCACTTTGCACCGCC---CA 359
                       *   *   ****   * *    *  *** * ** *     ****** *   ***    *

consensus_2053#0      GGTGCAGTGCCTACCGGACCGAGCGGAACCAGCGGGACAGCTGACGACGGTCCCGGAGCG 531
consensus_2053#1      GCTACGATTCGCTCGTGTTCGAGAAGGAT-AACGACAGCGATATTCATCATCCCGTAC-- 416
                      * * *  * *   *  *  ****  * *  * **  *  * *    *   ***** *   

consensus_2053#0      GGTCGATGGATCGACGGAATCCACTACAGACGACGTTGCTGCCACGGTCACCGAAGACGA 591
consensus_2053#1      GATACTCGCATCGATGGTGCCCATCACGCACGGAGC-GTTG--ACGATCTG--------- 464
                      * *    * ***** **   ***  **  ***  *  * **  *** **           

consensus_2053#0      TCTCTACTTAGTAGATACCACCACCACCACGCAGCAGAGCATCAAAACGACGACACATGA 651
consensus_2053#1      ------------------------------------------------------------
                                                                                  

consensus_2053#0      TCGGGTCTTGT 662
consensus_2053#1      -----------