cluster # 2056

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Anopheles gambiae
cluster # 2056 cluster # 2056 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2056#0 length = 658 sequences # 1

consensus_2056#1 length = 490 sequences # 1

consensusID : consensus_2056#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 658
fasta sequence

                              [TGTTTTAGTCACTTTACTGAAGCAAACCTTCTTAATTTGTGAAAAAATATATTTCTAATAGTTTAATTCAGGTATCATCAACGTTTTCAGGTATCATCAACAATTTCAAGCATCATACCACAATCTTGGCTTTGGCTAAGACAGATTCGGGAAGGGGTACCATCTAACCAATGGGTACAGTTTAGTGATGGGTAAAGTTGGGAGTCGACTCCGATCTGCCTGCGACAATTTCAGAACCAATTCGGAAAGGTAGATCCGCCCAGCATTATCCGGAGTCGTTCGAAATCGTCCGGAATCGCTCGGGGTCATCCGGATTCCGAGTCGTCTGTAGTCGGCCTTCGAAACAAAGGCCTGTATACAAAGTGCACGAGCAAAGTAAAAGACAAAAAAAAACACAACGTAATGTAATGCCTGCTTACAAGCACATTGCACCTGTTCACTCCAATGCCTCCTGTTGACTCCAATCGACACCGATTCCAGTCAACTCTGATCGATTCTGAACGACTCCGAAAGACTTTGATTCTGATCGACTCCGGCCGACTCCGGACGACCCCAACTCCAAACGTCTCCGGCCTAGTCCAGACGACTCCGAACGACTCCGGATGACTCCAAACGACACCGAGCGACTCCGGACGACACCGAACAACTCCAAATCCGG]

[+] EMBL BX618908             [TGTTTTAGTCACTTTACTGAAGCAAACCTTCTTAATTTGTGAAAAAATATATTTCTAATAGTTTAATTCAGGTATCATCAACGTTTTCAGGTATCATCAACAATTTCAAGCATCATACCACAATCTTGGCTTTGGCTAAGACAGATTCGGGAAGGGGTACCATCTAACCAATGGGTACAGTTTAGTGATGGGTAAAGTTGGGAGTCGACTCCGATCTGCCTGCGACAATTTCAGAACCAATTCGGAAAGGTAGATCCGCCCAGCATTATCCGGAGTCGTTCGAAATCGTCCGGAATCGCTCGGGGTCATCCGGATTCCGAGTCGTCTGTAGTCGGCCTTCGAAACAAAGGCCTGTATACAAAGTGCACGAGCAAAGTAAAAGACAAAAAAAAACACAACGTAATGTAATGCCTGCTTACAAGCACATTGCACCTGTTCACTCCAATGCCTCCTGTTGACTCCAATCGACACCGATTCCAGTCAACTCTGATCGATTCTGAACGACTCCGAAAGACTTTGATTCTGATCGACTCCGGCCGACTCCGGACGACCCCAACTCCAAACGTCTCCGGCCTAGTCCAGACGACTCCGAACGACTCCGGATGACTCCAAACGACACCGAGCGACTCCGGACGACACCGAACAACTCCAAATCCGG]




>consensus_2056#0
TGTTTTAGTCACTTTACTGAAGCAAACCTTCTTAATTTGTGAAAAAATATATTTCTAATA
GTTTAATTCAGGTATCATCAACGTTTTCAGGTATCATCAACAATTTCAAGCATCATACCA
CAATCTTGGCTTTGGCTAAGACAGATTCGGGAAGGGGTACCATCTAACCAATGGGTACAG
TTTAGTGATGGGTAAAGTTGGGAGTCGACTCCGATCTGCCTGCGACAATTTCAGAACCAA
TTCGGAAAGGTAGATCCGCCCAGCATTATCCGGAGTCGTTCGAAATCGTCCGGAATCGCT
CGGGGTCATCCGGATTCCGAGTCGTCTGTAGTCGGCCTTCGAAACAAAGGCCTGTATACA
AAGTGCACGAGCAAAGTAAAAGACAAAAAAAAACACAACGTAATGTAATGCCTGCTTACA
AGCACATTGCACCTGTTCACTCCAATGCCTCCTGTTGACTCCAATCGACACCGATTCCAG
TCAACTCTGATCGATTCTGAACGACTCCGAAAGACTTTGATTCTGATCGACTCCGGCCGA
CTCCGGACGACCCCAACTCCAAACGTCTCCGGCCTAGTCCAGACGACTCCGAACGACTCC
GGATGACTCCAAACGACACCGAGCGACTCCGGACGACACCGAACAACTCCAAATCCGG

consensusID : consensus_2056#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 490
fasta sequence

                              [CCCACGCGTCCGCGGACGCGTGGGATTGCATCCGATGAATTCAGGTATCATCAACGTTTTCAGGTATCATCAACGATTTCAAGCATCATACCGCAATCTTGGCTTTGGCTAAGACAGATTCGGGAAGGGGTCCCGCGGTCTTGAGATAAAGTGTGAAACCCTGTATTGTACGACTTGGAAACACTTCGTGTTGTACCCTATCATCCATGTTGAAAACTTTTTCGAGATAAATTCAAATTGTTTGTATCGTATCATATATTGCATTATAGTTGACCAGAAAACTGGCTTCTTATATTCTTGAATGAACATTATCAACGGTATTTTAATGATCATTGGCATAAAACCAAAAAAATGCTGCAAGAAAAGTTATATTAAAAGGCATATGGTTCCATAAGTGCTGTTAAGGATTGTGGGTTTCACTATTGCCCCTACACTGATAGCCCATAGATCCTCACTTCAATGGAGATTGTTATTTGTATAACTATTTGCG]

[+] EMBL BM601519             [CCCACGCGTCCGCGGACGCGTGGGATTGCATCCGATGAATTCAGGTATCATCAACGTTTTCAGGTATCATCAACGATTTCAAGCATCATACCGCAATCTTGGCTTTGGCTAAGACAGATTCGGGAAGGGGTCCCGCGGTCTTGAGATAAAGTGTGAAACCCTGTATTGTACGACTTGGAAACACTTCGTGTTGTACCCTATCATCCATGTTGAAAACTTTTTCGAGATAAATTCAAATTGTTTGTATCGTATCATATATTGCATTATAGTTGACCAGAAAACTGGCTTCTTATATTCTTGAATGAACATTATCAACGGTATTTTAATGATCATTGGCATAAAACCAAAAAAATGCTGCAAGAAAAGTTATATTAAAAGGCATATGGTTCCATAAGTGCTGTTAAGGATTGTGGGTTTCACTATTGCCCCTACACTGATAGCCCATAGATCCTCACTTCAATGGAGATTGTTATTTGTATAACTATTTGCG]




>consensus_2056#1
CCCACGCGTCCGCGGACGCGTGGGATTGCATCCGATGAATTCAGGTATCATCAACGTTTT
CAGGTATCATCAACGATTTCAAGCATCATACCGCAATCTTGGCTTTGGCTAAGACAGATT
CGGGAAGGGGTCCCGCGGTCTTGAGATAAAGTGTGAAACCCTGTATTGTACGACTTGGAA
ACACTTCGTGTTGTACCCTATCATCCATGTTGAAAACTTTTTCGAGATAAATTCAAATTG
TTTGTATCGTATCATATATTGCATTATAGTTGACCAGAAAACTGGCTTCTTATATTCTTG
AATGAACATTATCAACGGTATTTTAATGATCATTGGCATAAAACCAAAAAAATGCTGCAA
GAAAAGTTATATTAAAAGGCATATGGTTCCATAAGTGCTGTTAAGGATTGTGGGTTTCAC
TATTGCCCCTACACTGATAGCCCATAGATCCTCACTTCAATGGAGATTGTTATTTGTATA
ACTATTTGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2056#0      TGTTTTAGTCACTTTACTGAAGCAAACCTTCTTAATTTGTGAAAAAATATATTTCTAATA 60
consensus_2056#1      ---------------------------CCCACGCGTCCGCGGACGCGTGGGATTGCATCC 33
                                                 *       *  * * *    *    **  *   

consensus_2056#0      GTTTAATTCAGGTATCATCAACGTTTTCAGGTATCATCAACAATTTCAAGCATCATACCA 120
consensus_2056#1      GATGAATTCAGGTATCATCAACGTTTTCAGGTATCATCAACGATTTCAAGCATCATACCG 93
                      * * ************************************* ***************** 

consensus_2056#0      CAATCTTGGCTTTGGCTAAGACAGATTCGGGAAGGGGTACCATCTAACCAATGGGTACAG 180
consensus_2056#1      CAATCTTGGCTTTGGCTAAGACAGATTCGGGAAGGGGTCCCG--CGGTCTTGAGATAAAG 151
                      ************************************** **       *    * ** **

consensus_2056#0      TTTAGTGATGGGTAAAGTTGGGAGTCGACTCCGATCTGCCTGCGACAATTTCAGAACCAA 240
consensus_2056#1      TGTGAAACCCTGTATTGTACGACTTGGAAACA---CTTCGTGTTGTACCCTATCATCCAT 208
                      * *        ***  **  *   * **  *    ** * **    *   *   * *** 

consensus_2056#0      TTCGGAAAGGTAGATCCGCCCAGCATTATCCGGAGTCGTTCGAAAT-CGTCCGGAATCGC 299
consensus_2056#1      GTTGAAAA------CTTTTTCGAGATAAATTCAAATTGTTTGTATCGTATCATATATTGC 262
                       * * ***            *   ** *     * * *** * *     **    ** **

consensus_2056#0      -TCGGGGTCATCCGGATTCCGAGTCGTCTGTAGTCGGCCTTCGAAACAAAGGCCTGTATA 358
consensus_2056#1      ATTATAGTTGACCAGAAAACTGGCTTCTTATATTC-----TTGAATGAACATTATCAACG 317
                       *    **   ** **   *  *     * ** **     * ***  **     *  *  

consensus_2056#0      CAAAGTGCACGAGCAAAGTAAAAGACAAAAAAAAACACAACGTAATGTAATGCCTGCTTA 418
consensus_2056#1      GTATTTTAATGATCATTGGCATAAAACCAAAAAAATGC--TGCAAGAAAAGTTATATTAA 375
                        *  *  * ** **  *  * * *   *******  *   * **   **    *  * *

consensus_2056#0      CAAGCACATTGCACCTGTTCACTCCAATGCCTCCTGTTGACTCCAATCGACACCGATTCC 478
consensus_2056#1      AAGGCATATGGT-TCCATAAGTGCTGTTAAGGATTGTGGGTTTCACT--ATTGCCCCTAC 432
                       * *** ** *   *  *     *   *      *** *  * ** *  *   *   * *

consensus_2056#0      AGTCAACTCTGATCGATTCTGAACGACTCCGAAAGACTTTGAT-TCTGATCGACTCCGGC 537
consensus_2056#1      ACTGATAGCCCATAGATCCTC----ACTTCAATGGAGATTGTTATTTGTATAACTATTTG 488
                      * * *   *  ** *** **     *** * *  **  *** * * **    ***     

consensus_2056#0      CGACTCCGGACGACCCCAACTCCAAACGTCTCCGGCCTAGTCCAGACGACTCCGAACGAC 597
consensus_2056#1      CG---------------------------------------------------------- 490
                      **                                                          

consensus_2056#0      TCCGGATGACTCCAAACGACACCGAGCGACTCCGGACGACACCGAACAACTCCAAATCCG 657
consensus_2056#1      ------------------------------------------------------------
                                                                                  

consensus_2056#0      G 658
consensus_2056#1      -