cluster # 206

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Anopheles gambiae
cluster # 206 cluster # 206 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_206#0 length = 666 sequences # 1

consensus_206#1 length = 573 sequences # 1

consensusID : consensus_206#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 666
fasta sequence

                              [CCGGTCTATGTTGGCAAGTCCGCTATGTTCGACTAGCTGTTTAACGAACTAGTGATAAAAAGATACAAATCAGTTTAAAGATAAAATAATTGTGACAATTTGAATCGTGTAGAGAATCAATGCTACATGCTGTTATTAAAACCAATAGTACTCCAATAGCCGTTTAGACGTGTGCCGTTTACCGTTTGGTTGTGCTGTGTTGTAAAGGTACGGAGCAGGCTGGCGTACCGCACACGGTGCGGTTGCGCACTTCTAGGATCTAACATTCTTCCTTAGTAGTTGCAATTTTGGAATATGATAGGTTTAAGTCGACGTGGAGTTAGTGCAGGACCGTCACTGAGTTTACCGTCTACACTGGAGGACTCTACAAACAATTGGAAAGGAACACCTTCGGGACCAACCGACCCTTCGCAGCAAGGTGCGGGTCCTGGAGGAACTGGAGTCGGCCCTGGAGTTGCTGGTAATGGTGGTCCAGGTGGCCCCAGTGGTCCAGGGGTCCAAGGACCCGGTGTGAACAGTTTTGGTGGTCCTGGTGGAGCTAACAATTTTGGAGGTCCTGTGTTTCCAGCAGCCGGTCAAGGTTCTCCAGCCGGAGGATCTGCTTCGAATAGTTATCAAAATTTACCACCAGGCACTGGTTCAAATACGCCACAGTATACAGCATCC]

[+] EMBL BM579273             [CCGGTCTATGTTGGCAAGTCCGCTATGTTCGACTAGCTGTTTAACGAACTAGTGATAAAAAGATACAAATCAGTTTAAAGATAAAATAATTGTGACAATTTGAATCGTGTAGAGAATCAATGCTACATGCTGTTATTAAAACCAATAGTACTCCAATAGCCGTTTAGACGTGTGCCGTTTACCGTTTGGTTGTGCTGTGTTGTAAAGGTACGGAGCAGGCTGGCGTACCGCACACGGTGCGGTTGCGCACTTCTAGGATCTAACATTCTTCCTTAGTAGTTGCAATTTTGGAATATGATAGGTTTAAGTCGACGTGGAGTTAGTGCAGGACCGTCACTGAGTTTACCGTCTACACTGGAGGACTCTACAAACAATTGGAAAGGAACACCTTCGGGACCAACCGACCCTTCGCAGCAAGGTGCGGGTCCTGGAGGAACTGGAGTCGGCCCTGGAGTTGCTGGTAATGGTGGTCCAGGTGGCCCCAGTGGTCCAGGGGTCCAAGGACCCGGTGTGAACAGTTTTGGTGGTCCTGGTGGAGCTAACAATTTTGGAGGTCCTGTGTTTCCAGCAGCCGGTCAAGGTTCTCCAGCCGGAGGATCTGCTTCGAATAGTTATCAAAATTTACCACCAGGCACTGGTTCAAATACGCCACAGTATACAGCATCC]




>consensus_206#0
CCGGTCTATGTTGGCAAGTCCGCTATGTTCGACTAGCTGTTTAACGAACTAGTGATAAAA
AGATACAAATCAGTTTAAAGATAAAATAATTGTGACAATTTGAATCGTGTAGAGAATCAA
TGCTACATGCTGTTATTAAAACCAATAGTACTCCAATAGCCGTTTAGACGTGTGCCGTTT
ACCGTTTGGTTGTGCTGTGTTGTAAAGGTACGGAGCAGGCTGGCGTACCGCACACGGTGC
GGTTGCGCACTTCTAGGATCTAACATTCTTCCTTAGTAGTTGCAATTTTGGAATATGATA
GGTTTAAGTCGACGTGGAGTTAGTGCAGGACCGTCACTGAGTTTACCGTCTACACTGGAG
GACTCTACAAACAATTGGAAAGGAACACCTTCGGGACCAACCGACCCTTCGCAGCAAGGT
GCGGGTCCTGGAGGAACTGGAGTCGGCCCTGGAGTTGCTGGTAATGGTGGTCCAGGTGGC
CCCAGTGGTCCAGGGGTCCAAGGACCCGGTGTGAACAGTTTTGGTGGTCCTGGTGGAGCT
AACAATTTTGGAGGTCCTGTGTTTCCAGCAGCCGGTCAAGGTTCTCCAGCCGGAGGATCT
GCTTCGAATAGTTATCAAAATTTACCACCAGGCACTGGTTCAAATACGCCACAGTATACA
GCATCC

consensusID : consensus_206#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 573
fasta sequence

                              [CCGCCCACGCGTCCGATTTGAATCGTGTAGAGAATCAATGCTACATGCTGTTATTAAAACCAATAGTACTCCAATAGCCGTTTAGACGTGTGCCGTTTACCGTTTGGTTGTGCTGTGTTGTAAAGGTACGGAGCAGGCTGGCGTACCGCACACGGTGCGGTTGCGCACTTCTAGGATCTAACATTCTTCCTTAGTAGTTGCAATTTTGGAATATGATAGGTTTAAGTCGACGTGGAGTTAGTGCAGGACCGTCACTGAGTTTACCGTCTACACTGGAGGACTCTACAAACAATTGGAAAGGAACACCTTCGGGACCAACCGACCCTTCGCAGCAAGGTGCGGGTCCTGGAGGAACTGGAGTCGGCCCTGGAGTTGCTGGTAATGGTGGTCCAGGTGGCCCCAGTGGTCCAGGGGTCCAAGGACCCGGTGTGAACAGTTTTGGTGGTCCTGGTGGAGCTAACAATTTTGGAGGTCCTGTGTTTCCAGCAGCCGGTCAAGGTTCTCCAGCCGGAGGATCTGCTTCGAATAGTTATCAAAATTTACCACCAGGCACTGGTTCAAATACGCCACAGT]

[+] EMBL BM611297             [CCGCCCACGCGTCCGATTTGAATCGTGTAGAGAATCAATGCTACATGCTGTTATTAAAACCAATAGTACTCCAATAGCCGTTTAGACGTGTGCCGTTTACCGTTTGGTTGTGCTGTGTTGTAAAGGTACGGAGCAGGCTGGCGTACCGCACACGGTGCGGTTGCGCACTTCTAGGATCTAACATTCTTCCTTAGTAGTTGCAATTTTGGAATATGATAGGTTTAAGTCGACGTGGAGTTAGTGCAGGACCGTCACTGAGTTTACCGTCTACACTGGAGGACTCTACAAACAATTGGAAAGGAACACCTTCGGGACCAACCGACCCTTCGCAGCAAGGTGCGGGTCCTGGAGGAACTGGAGTCGGCCCTGGAGTTGCTGGTAATGGTGGTCCAGGTGGCCCCAGTGGTCCAGGGGTCCAAGGACCCGGTGTGAACAGTTTTGGTGGTCCTGGTGGAGCTAACAATTTTGGAGGTCCTGTGTTTCCAGCAGCCGGTCAAGGTTCTCCAGCCGGAGGATCTGCTTCGAATAGTTATCAAAATTTACCACCAGGCACTGGTTCAAATACGCCACAGT]




>consensus_206#1
CCGCCCACGCGTCCGATTTGAATCGTGTAGAGAATCAATGCTACATGCTGTTATTAAAAC
CAATAGTACTCCAATAGCCGTTTAGACGTGTGCCGTTTACCGTTTGGTTGTGCTGTGTTG
TAAAGGTACGGAGCAGGCTGGCGTACCGCACACGGTGCGGTTGCGCACTTCTAGGATCTA
ACATTCTTCCTTAGTAGTTGCAATTTTGGAATATGATAGGTTTAAGTCGACGTGGAGTTA
GTGCAGGACCGTCACTGAGTTTACCGTCTACACTGGAGGACTCTACAAACAATTGGAAAG
GAACACCTTCGGGACCAACCGACCCTTCGCAGCAAGGTGCGGGTCCTGGAGGAACTGGAG
TCGGCCCTGGAGTTGCTGGTAATGGTGGTCCAGGTGGCCCCAGTGGTCCAGGGGTCCAAG
GACCCGGTGTGAACAGTTTTGGTGGTCCTGGTGGAGCTAACAATTTTGGAGGTCCTGTGT
TTCCAGCAGCCGGTCAAGGTTCTCCAGCCGGAGGATCTGCTTCGAATAGTTATCAAAATT
TACCACCAGGCACTGGTTCAAATACGCCACAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_206#0      CCGGTCTATGTTGGCAAGTCCGCTATGTTCGACTAGCTGTTTAACGAACTAGTGATAAAA 60
consensus_206#1      ------------------------------------------------------------
                                                                                 

consensus_206#0      AGATACAAATCAGTTTAAAGATAAAATAATTGTGACAATTTGAATCGTGTAGAGAATCAA 120
consensus_206#1      ---------------------CCGCCCACGCGTC-CGATTTGAATCGTGTAGAGAATCAA 38
                                                *   **  * ***********************

consensus_206#0      TGCTACATGCTGTTATTAAAACCAATAGTACTCCAATAGCCGTTTAGACGTGTGCCGTTT 180
consensus_206#1      TGCTACATGCTGTTATTAAAACCAATAGTACTCCAATAGCCGTTTAGACGTGTGCCGTTT 98
                     ************************************************************

consensus_206#0      ACCGTTTGGTTGTGCTGTGTTGTAAAGGTACGGAGCAGGCTGGCGTACCGCACACGGTGC 240
consensus_206#1      ACCGTTTGGTTGTGCTGTGTTGTAAAGGTACGGAGCAGGCTGGCGTACCGCACACGGTGC 158
                     ************************************************************

consensus_206#0      GGTTGCGCACTTCTAGGATCTAACATTCTTCCTTAGTAGTTGCAATTTTGGAATATGATA 300
consensus_206#1      GGTTGCGCACTTCTAGGATCTAACATTCTTCCTTAGTAGTTGCAATTTTGGAATATGATA 218
                     ************************************************************

consensus_206#0      GGTTTAAGTCGACGTGGAGTTAGTGCAGGACCGTCACTGAGTTTACCGTCTACACTGGAG 360
consensus_206#1      GGTTTAAGTCGACGTGGAGTTAGTGCAGGACCGTCACTGAGTTTACCGTCTACACTGGAG 278
                     ************************************************************

consensus_206#0      GACTCTACAAACAATTGGAAAGGAACACCTTCGGGACCAACCGACCCTTCGCAGCAAGGT 420
consensus_206#1      GACTCTACAAACAATTGGAAAGGAACACCTTCGGGACCAACCGACCCTTCGCAGCAAGGT 338
                     ************************************************************

consensus_206#0      GCGGGTCCTGGAGGAACTGGAGTCGGCCCTGGAGTTGCTGGTAATGGTGGTCCAGGTGGC 480
consensus_206#1      GCGGGTCCTGGAGGAACTGGAGTCGGCCCTGGAGTTGCTGGTAATGGTGGTCCAGGTGGC 398
                     ************************************************************

consensus_206#0      CCCAGTGGTCCAGGGGTCCAAGGACCCGGTGTGAACAGTTTTGGTGGTCCTGGTGGAGCT 540
consensus_206#1      CCCAGTGGTCCAGGGGTCCAAGGACCCGGTGTGAACAGTTTTGGTGGTCCTGGTGGAGCT 458
                     ************************************************************

consensus_206#0      AACAATTTTGGAGGTCCTGTGTTTCCAGCAGCCGGTCAAGGTTCTCCAGCCGGAGGATCT 600
consensus_206#1      AACAATTTTGGAGGTCCTGTGTTTCCAGCAGCCGGTCAAGGTTCTCCAGCCGGAGGATCT 518
                     ************************************************************

consensus_206#0      GCTTCGAATAGTTATCAAAATTTACCACCAGGCACTGGTTCAAATACGCCACAGTATACA 660
consensus_206#1      GCTTCGAATAGTTATCAAAATTTACCACCAGGCACTGGTTCAAATACGCCACAGT----- 573
                     *******************************************************     

consensus_206#0      GCATCC 666
consensus_206#1      ------