cluster # 2066

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Anopheles gambiae
cluster # 2066 cluster # 2066 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2066#0 length = 690 sequences # 1

consensus_2066#1 length = 575 sequences # 1

consensusID : consensus_2066#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 690
fasta sequence

                              [GCAGAATCGGCACGAGGCTTTTTTCGTTGAATAAATTAATATTAATATTCAATTTAAATATTCCGATATGATGATTCGCTCGCAAAAACAGAAACAAAAAAGAGTGTGCAAATGAAGGCAGCAGCACGGTGTCGGTGTCGTTAAATTGTGACAACACTTTGCGTTATCATTTGTTACACATGGGCACACACTTACGCACAAACACACATACACACTTGCACTTGTTATTGCTTGCGCTTCACTTGCTTCAATCGATCAAATTTTGTATCACTTTTTTTCGGTTGTGTGTGTGTGTACACAGGCACAAACGCAAAACGAACGAGTTGCTGTGATCAATTTTCTTGCCACCATCAGAGGTAGGCTACGGTAACTTTGCAGGGCTTTTCCTTCTTGACCCTGTCGTGGCGCGCGCACTTGGGTTTCGCAAACTTCACAACATCACGGTGGCCGGCAGACGAAGCTGGTCGTATTGTTGAGCGAAGGACACACGGACACTCACTCGTTCGGTATATGTCGAGGTGGTTGAAAAAACAAATTGGAACTATTTCTCCGCTTCCTCGGCGTTCGCGTTCCGCTTTGCACGGTTTGTTCTCGGTTTCGTCTCCGTTGCAGCTGAGCTTACGCAAAAAAAAACGGGATCGCGGAACGAGCCAAACAGGGGCGCTGCGGTTTTCCAAAGAACTAACGAAT]

[+] EMBL BX467744             [GCAGAATCGGCACGAGGCTTTTTTCGTTGAATAAATTAATATTAATATTCAATTTAAATATTCCGATATGATGATTCGCTCGCAAAAACAGAAACAAAAAAGAGTGTGCAAATGAAGGCAGCAGCACGGTGTCGGTGTCGTTAAATTGTGACAACACTTTGCGTTATCATTTGTTACACATGGGCACACACTTACGCACAAACACACATACACACTTGCACTTGTTATTGCTTGCGCTTCACTTGCTTCAATCGATCAAATTTTGTATCACTTTTTTTCGGTTGTGTGTGTGTGTACACAGGCACAAACGCAAAACGAACGAGTTGCTGTGATCAATTTTCTTGCCACCATCAGAGGTAGGCTACGGTAACTTTGCAGGGCTTTTCCTTCTTGACCCTGTCGTGGCGCGCGCACTTGGGTTTCGCAAACTTCACAACATCACGGTGGCCGGCAGACGAAGCTGGTCGTATTGTTGAGCGAAGGACACACGGACACTCACTCGTTCGGTATATGTCGAGGTGGTTGAAAAAACAAATTGGAACTATTTCTCCGCTTCCTCGGCGTTCGCGTTCCGCTTTGCACGGTTTGTTCTCGGTTTCGTCTCCGTTGCAGCTGAGCTTACGCAAAAAAAAACGGGATCGCGGAACGAGCCAAACAGGGGCGCTGCGGTTTTCCAAAGAACTAACGAAT]




>consensus_2066#0
GCAGAATCGGCACGAGGCTTTTTTCGTTGAATAAATTAATATTAATATTCAATTTAAATA
TTCCGATATGATGATTCGCTCGCAAAAACAGAAACAAAAAAGAGTGTGCAAATGAAGGCA
GCAGCACGGTGTCGGTGTCGTTAAATTGTGACAACACTTTGCGTTATCATTTGTTACACA
TGGGCACACACTTACGCACAAACACACATACACACTTGCACTTGTTATTGCTTGCGCTTC
ACTTGCTTCAATCGATCAAATTTTGTATCACTTTTTTTCGGTTGTGTGTGTGTGTACACA
GGCACAAACGCAAAACGAACGAGTTGCTGTGATCAATTTTCTTGCCACCATCAGAGGTAG
GCTACGGTAACTTTGCAGGGCTTTTCCTTCTTGACCCTGTCGTGGCGCGCGCACTTGGGT
TTCGCAAACTTCACAACATCACGGTGGCCGGCAGACGAAGCTGGTCGTATTGTTGAGCGA
AGGACACACGGACACTCACTCGTTCGGTATATGTCGAGGTGGTTGAAAAAACAAATTGGA
ACTATTTCTCCGCTTCCTCGGCGTTCGCGTTCCGCTTTGCACGGTTTGTTCTCGGTTTCG
TCTCCGTTGCAGCTGAGCTTACGCAAAAAAAAACGGGATCGCGGAACGAGCCAAACAGGG
GCGCTGCGGTTTTCCAAAGAACTAACGAAT

consensusID : consensus_2066#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 575
fasta sequence

                              [CAGAAACAAAGAAGGGTGAGCAAATGAAGGCAGCAGCGCTTCCCCGTGTCGGTGTCGTTAAATTGTGACAACACTTTGCGTTATCATTTGTTACACATGGGCACACACTTACGCACAAACACACATACACACTTGCACTTGCTATTGCTTGCGCTTCACTTGCTTCAATCGATCAAATTTTGTATCACTTTTTTTCGGTTGTGTGTGTGTACACAGGCACAAACGCAAAACGAACGAGTTGCTGTGATCAATTTTCTTGCCACCATCAGAGGTAGGCTACGGTAACTTTGCAGGGCTTTTCCTTCTTGACCCTGTCGTGGCGCGCGCACTTGGGTTTCGCAAACTTCACAACATCACTGTAGCCGGCAGACGAAGCTGGTCGTATTGTTGAGCGAAGGACACACGGACACTCACTCGTTCGGTATATGTCGAAGTGGTTGAAAAAACAAATTGGAACTGTTTCTCCGCTTCTTCGCGTTCGCGTTCCGCTTTGCACGGTTTGTTCTCGGTTTCGTCTCCGTTGCAGCTGAGCTTACGCAAAAAAAAACGGGATCGCGGAACCCACGCGTCCGCGG]

[-] EMBL BM651695             [CAGAAACAAAGAAGGGTGAGCAAATGAAGGCAGCAGCGCTTCCCCGTGTCGGTGTCGTTAAATTGTGACAACACTTTGCGTTATCATTTGTTACACATGGGCACACACTTACGCACAAACACACATACACACTTGCACTTGCTATTGCTTGCGCTTCACTTGCTTCAATCGATCAAATTTTGTATCACTTTTTTTCGGTTGTGTGTGTGTACACAGGCACAAACGCAAAACGAACGAGTTGCTGTGATCAATTTTCTTGCCACCATCAGAGGTAGGCTACGGTAACTTTGCAGGGCTTTTCCTTCTTGACCCTGTCGTGGCGCGCGCACTTGGGTTTCGCAAACTTCACAACATCACTGTAGCCGGCAGACGAAGCTGGTCGTATTGTTGAGCGAAGGACACACGGACACTCACTCGTTCGGTATATGTCGAAGTGGTTGAAAAAACAAATTGGAACTGTTTCTCCGCTTCTTCGCGTTCGCGTTCCGCTTTGCACGGTTTGTTCTCGGTTTCGTCTCCGTTGCAGCTGAGCTTACGCAAAAAAAAACGGGATCGCGGAACCCACGCGTCCGCGG]




>consensus_2066#1
CAGAAACAAAGAAGGGTGAGCAAATGAAGGCAGCAGCGCTTCCCCGTGTCGGTGTCGTTA
AATTGTGACAACACTTTGCGTTATCATTTGTTACACATGGGCACACACTTACGCACAAAC
ACACATACACACTTGCACTTGCTATTGCTTGCGCTTCACTTGCTTCAATCGATCAAATTT
TGTATCACTTTTTTTCGGTTGTGTGTGTGTACACAGGCACAAACGCAAAACGAACGAGTT
GCTGTGATCAATTTTCTTGCCACCATCAGAGGTAGGCTACGGTAACTTTGCAGGGCTTTT
CCTTCTTGACCCTGTCGTGGCGCGCGCACTTGGGTTTCGCAAACTTCACAACATCACTGT
AGCCGGCAGACGAAGCTGGTCGTATTGTTGAGCGAAGGACACACGGACACTCACTCGTTC
GGTATATGTCGAAGTGGTTGAAAAAACAAATTGGAACTGTTTCTCCGCTTCTTCGCGTTC
GCGTTCCGCTTTGCACGGTTTGTTCTCGGTTTCGTCTCCGTTGCAGCTGAGCTTACGCAA
AAAAAAACGGGATCGCGGAACCCACGCGTCCGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2066#0      GCAGAATCGGCACGAGGCTTTTTTCGTTGAATAAATTAATATTAATATTCAATTTAAATA 60
consensus_2066#1      ------------------------------------------------------------
                                                                                  

consensus_2066#0      TTCCGATATGATGATTCGCTCGCAAAAACAGAAACAAAAAAGAGTGTGCAAATGAAGGCA 120
consensus_2066#1      ----------------------------CAGAAACAAAGAAGGGTGAGCAAATGAAGGCA 32
                                                  ********** *** *** *************

consensus_2066#0      GCAGCACG-----GTGTCGGTGTCGTTAAATTGTGACAACACTTTGCGTTATCATTTGTT 175
consensus_2066#1      GCAGCGCTTCCCCGTGTCGGTGTCGTTAAATTGTGACAACACTTTGCGTTATCATTTGTT 92
                      ***** *      ***********************************************

consensus_2066#0      ACACATGGGCACACACTTACGCACAAACACACATACACACTTGCACTTGTTATTGCTTGC 235
consensus_2066#1      ACACATGGGCACACACTTACGCACAAACACACATACACACTTGCACTTGCTATTGCTTGC 152
                      ************************************************* **********

consensus_2066#0      GCTTCACTTGCTTCAATCGATCAAATTTTGTATCACTTTTTTTCGGTTGTGTGTGTGTGT 295
consensus_2066#1      GCTTCACTTGCTTCAATCGATCAAATTTTGTATCACTTTTTTTCGGTTGTGTGTGTGT-- 210
                      **********************************************************  

consensus_2066#0      ACACAGGCACAAACGCAAAACGAACGAGTTGCTGTGATCAATTTTCTTGCCACCATCAGA 355
consensus_2066#1      ACACAGGCACAAACGCAAAACGAACGAGTTGCTGTGATCAATTTTCTTGCCACCATCAGA 270
                      ************************************************************

consensus_2066#0      GGTAGGCTACGGTAACTTTGCAGGGCTTTTCCTTCTTGACCCTGTCGTGGCGCGCGCACT 415
consensus_2066#1      GGTAGGCTACGGTAACTTTGCAGGGCTTTTCCTTCTTGACCCTGTCGTGGCGCGCGCACT 330
                      ************************************************************

consensus_2066#0      TGGGTTTCGCAAACTTCACAACATCACGGTGGCCGGCAGACGAAGCTGGTCGTATTGTTG 475
consensus_2066#1      TGGGTTTCGCAAACTTCACAACATCACTGTAGCCGGCAGACGAAGCTGGTCGTATTGTTG 390
                      *************************** ** *****************************

consensus_2066#0      AGCGAAGGACACACGGACACTCACTCGTTCGGTATATGTCGAGGTGGTTGAAAAAACAAA 535
consensus_2066#1      AGCGAAGGACACACGGACACTCACTCGTTCGGTATATGTCGAAGTGGTTGAAAAAACAAA 450
                      ****************************************** *****************

consensus_2066#0      TTGGAACTATTTCTCCGCTTCCTCGGCGTTCGCGTTCCGCTTTGCACGGTTTGTTCTCGG 595
consensus_2066#1      TTGGAACTGTTTCTCCGCTTCTTCG-CGTTCGCGTTCCGCTTTGCACGGTTTGTTCTCGG 509
                      ******** ************ *** **********************************

consensus_2066#0      TTTCGTCTCCGTTGCAGCTGAGCTTACGCAAAAAAAAACGGGATCGCGGAACGAGCCAAA 655
consensus_2066#1      TTTCGTCTCCGTTGCAGCTGAGCTTACGCAAAAAAAAACGGGATCGCGGAACCCACGCGT 569
                      ****************************************************   *    

consensus_2066#0      CAGGGGCGCTGCGGTTTTCCAAAGAACTAACGAAT 690
consensus_2066#1      CCGCGG----------------------------- 575
                      * * **