cluster # 2069

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Anopheles gambiae
cluster # 2069 cluster # 2069 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2069#0 length = 1071 sequences # 1

consensus_2069#1 length = 514 sequences # 1

consensusID : consensus_2069#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1071
fasta sequence

                              [AGGCAGATTGCCCCGAGGATTAAAACAGACAGAGCTCCCGGCGATGGATCACACGCGCCAAAATTTCGCACTACGAGATATATCAATTATCTTTACAGAACTCGTTACCGACGCTGTTTCTTACGGGTTACAGGAAAGAACTGACAGGCCCGACACTACCAGCTAAGAGTAACGCTACCAGGGAACCGGGAATAGCCGTTTCGCGTACGGCTTATACGATCCAACAAAACAACCAACCAACAGATATNCCCCGTTTACGAACGGNTAGAACGGCGTTAGGTACTGTCCGTTTATTTTAAAACCTTTGANCGGTAAGCCTTGGTTCCTGTTTTGGCCCTACCGGTCTAATTACCACAACTGGGCACACGACCCGGCCGGCANGGGCAAAGCTAAACTATAGTCGCTNTACGTTGTAGACCGAGNCGGGTTCTCTATATTGAACCATTTGNATCCATGGTAAACCCCTTTGANCTTGGTCCCGGACGGCAGGCTTTTACGAAGACGGTGACACACAAACTTTTGGCTCTACACCGGGCTTGGNTCANGGATTCCCTTGGGGTTACATTCTTTACANAGCNCGCGCAACAAAGGAATTTTAGTGACCCTAATTCCGCANCACAACCCAGCNCCCTACCGCCTAACCCGGTNTACTACGCGAATTACTTCCCAACGGCACTTAATAATACANGCAGGCCCCGACAACGTTTNTCCAACAGNGCAATTCCAACTTGGGGGACACATNCCCAAAAAAGGGGGAATTTGNGCTATTGGACACAACTACTTTGGTTAAACAGGCGTAACNCCGATGGTTCCATNCCGACAAGCGCCCCCCGGGCNNCATAACTCAGNGGGNACGATNGAACCAGGAAATTANTGGCAACACCCCCAACCAACATATNCATCGCCTACACATGCNTAGCAACTAGTCGGAGCTCTAGGTATCNTGACCCCCCATTTCCGGCACGGATACCCGCAAACATCTCTAGGGAGCTGNGCACTACCNTTATACCACATNGGGCCATNCAGGGTNATTGTCNCCNNNANTNNCCACAACCCTNAACATAGGGGAAC]

[+] EMBL AL695564             [AGGCAGATTGCCCCGAGGATTAAAACAGACAGAGCTCCCGGCGATGGATCACACGCGCCAAAATTTCGCACTACGAGATATATCAATTATCTTTACAGAACTCGTTACCGACGCTGTTTCTTACGGGTTACAGGAAAGAACTGACAGGCCCGACACTACCAGCTAAGAGTAACGCTACCAGGGAACCGGGAATAGCCGTTTCGCGTACGGCTTATACGATCCAACAAAACAACCAACCAACAGATATNCCCCGTTTACGAACGGNTAGAACGGCGTTAGGTACTGTCCGTTTATTTTAAAACCTTTGANCGGTAAGCCTTGGTTCCTGTTTTGGCCCTACCGGTCTAATTACCACAACTGGGCACACGACCCGGCCGGCANGGGCAAAGCTAAACTATAGTCGCTNTACGTTGTAGACCGAGNCGGGTTCTCTATATTGAACCATTTGNATCCATGGTAAACCCCTTTGANCTTGGTCCCGGACGGCAGGCTTTTACGAAGACGGTGACACACAAACTTTTGGCTCTACACCGGGCTTGGNTCANGGATTCCCTTGGGGTTACATTCTTTACANAGCNCGCGCAACAAAGGAATTTTAGTGACCCTAATTCCGCANCACAACCCAGCNCCCTACCGCCTAACCCGGTNTACTACGCGAATTACTTCCCAACGGCACTTAATAATACANGCAGGCCCCGACAACGTTTNTCCAACAGNGCAATTCCAACTTGGGGGACACATNCCCAAAAAAGGGGGAATTTGNGCTATTGGACACAACTACTTTGGTTAAACAGGCGTAACNCCGATGGTTCCATNCCGACAAGCGCCCCCCGGGCNNCATAACTCAGNGGGNACGATNGAACCAGGAAATTANTGGCAACACCCCCAACCAACATATNCATCGCCTACACATGCNTAGCAACTAGTCGGAGCTCTAGGTATCNTGACCCCCCATTTCCGGCACGGATACCCGCAAACATCTCTAGGGAGCTGNGCACTACCNTTATACCACATNGGGCCATNCAGGGTNATTGTCNCCNNNANTNNCCACAACCCTNAACATAGGGGAAC]




>consensus_2069#0
AGGCAGATTGCCCCGAGGATTAAAACAGACAGAGCTCCCGGCGATGGATCACACGCGCCA
AAATTTCGCACTACGAGATATATCAATTATCTTTACAGAACTCGTTACCGACGCTGTTTC
TTACGGGTTACAGGAAAGAACTGACAGGCCCGACACTACCAGCTAAGAGTAACGCTACCA
GGGAACCGGGAATAGCCGTTTCGCGTACGGCTTATACGATCCAACAAAACAACCAACCAA
CAGATATNCCCCGTTTACGAACGGNTAGAACGGCGTTAGGTACTGTCCGTTTATTTTAAA
ACCTTTGANCGGTAAGCCTTGGTTCCTGTTTTGGCCCTACCGGTCTAATTACCACAACTG
GGCACACGACCCGGCCGGCANGGGCAAAGCTAAACTATAGTCGCTNTACGTTGTAGACCG
AGNCGGGTTCTCTATATTGAACCATTTGNATCCATGGTAAACCCCTTTGANCTTGGTCCC
GGACGGCAGGCTTTTACGAAGACGGTGACACACAAACTTTTGGCTCTACACCGGGCTTGG
NTCANGGATTCCCTTGGGGTTACATTCTTTACANAGCNCGCGCAACAAAGGAATTTTAGT
GACCCTAATTCCGCANCACAACCCAGCNCCCTACCGCCTAACCCGGTNTACTACGCGAAT
TACTTCCCAACGGCACTTAATAATACANGCAGGCCCCGACAACGTTTNTCCAACAGNGCA
ATTCCAACTTGGGGGACACATNCCCAAAAAAGGGGGAATTTGNGCTATTGGACACAACTA
CTTTGGTTAAACAGGCGTAACNCCGATGGTTCCATNCCGACAAGCGCCCCCCGGGCNNCA
TAACTCAGNGGGNACGATNGAACCAGGAAATTANTGGCAACACCCCCAACCAACATATNC
ATCGCCTACACATGCNTAGCAACTAGTCGGAGCTCTAGGTATCNTGACCCCCCATTTCCG
GCACGGATACCCGCAAACATCTCTAGGGAGCTGNGCACTACCNTTATACCACATNGGGCC
ATNCAGGGTNATTGTCNCCNNNANTNNCCACAACCCTNAACATAGGGGAAC

consensusID : consensus_2069#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 514
fasta sequence

                              [CAACCGATCGGGGAACTTGGTCAGCCCGAGCCCGGTGCAGGCCACGCGCGTCGTAATCGTTTTGCGCTCCGTGTTGTTCAGGTCGAAGTTGAGCCGGTCGAGCTCGCAGGTGCAGTTCTCCGGGCACTCGTCCTGCACGCGCTGGATCGTCTCCAGCTGGTGCAGCGGCAGGCTGTCGGTCGAGTTGAACCAGTTGAAGGTGCGGTTCGTCAGGCAGAACGTCGACTCGGGATCCTTAAACTTGACGCCGCTCTTGAGCGATTCGAGCAGCGACTTGCACAGCATGCCAACGTTTCCGCGTATGTCGAGTGAAACTAGCACAAGCTTAGAATTACAACAAATAATCTTTCCAAACAGTTATTACATTCAATTTACGTTTCAATCCGATTCAAAACAGATAGAGCTCCCGGCGATGGATCACACGCGCCAAAATTTCGCACTACGAGATATATCAATTATCTTTACAGAACTCGTTACCGACGCTGTTTCTTACGGGTTACAGGAAAGAACTGAC]

[-] EMBL BX606432             [CAACCGATCGGGGAACTTGGTCAGCCCGAGCCCGGTGCAGGCCACGCGCGTCGTAATCGTTTTGCGCTCCGTGTTGTTCAGGTCGAAGTTGAGCCGGTCGAGCTCGCAGGTGCAGTTCTCCGGGCACTCGTCCTGCACGCGCTGGATCGTCTCCAGCTGGTGCAGCGGCAGGCTGTCGGTCGAGTTGAACCAGTTGAAGGTGCGGTTCGTCAGGCAGAACGTCGACTCGGGATCCTTAAACTTGACGCCGCTCTTGAGCGATTCGAGCAGCGACTTGCACAGCATGCCAACGTTTCCGCGTATGTCGAGTGAAACTAGCACAAGCTTAGAATTACAACAAATAATCTTTCCAAACAGTTATTACATTCAATTTACGTTTCAATCCGATTCAAAACAGATAGAGCTCCCGGCGATGGATCACACGCGCCAAAATTTCGCACTACGAGATATATCAATTATCTTTACAGAACTCGTTACCGACGCTGTTTCTTACGGGTTACAGGAAAGAACTGAC]




>consensus_2069#1
CAACCGATCGGGGAACTTGGTCAGCCCGAGCCCGGTGCAGGCCACGCGCGTCGTAATCGT
TTTGCGCTCCGTGTTGTTCAGGTCGAAGTTGAGCCGGTCGAGCTCGCAGGTGCAGTTCTC
CGGGCACTCGTCCTGCACGCGCTGGATCGTCTCCAGCTGGTGCAGCGGCAGGCTGTCGGT
CGAGTTGAACCAGTTGAAGGTGCGGTTCGTCAGGCAGAACGTCGACTCGGGATCCTTAAA
CTTGACGCCGCTCTTGAGCGATTCGAGCAGCGACTTGCACAGCATGCCAACGTTTCCGCG
TATGTCGAGTGAAACTAGCACAAGCTTAGAATTACAACAAATAATCTTTCCAAACAGTTA
TTACATTCAATTTACGTTTCAATCCGATTCAAAACAGATAGAGCTCCCGGCGATGGATCA
CACGCGCCAAAATTTCGCACTACGAGATATATCAATTATCTTTACAGAACTCGTTACCGA
CGCTGTTTCTTACGGGTTACAGGAAAGAACTGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2069#0      AGGCAGATTGCCCCGAGGATTAAAACAGACAGAGCTCCCGGCGATGGATCACACGCGCCA 60
consensus_2069#1      ------------------------------------------------------------
                                                                                  

consensus_2069#0      AAATTTCGCACTACGAGATATATCAATTATCTTTACAGAACTCGTTACCGACGCTGTTTC 120
consensus_2069#1      ------------------------------------------------------------
                                                                                  

consensus_2069#0      TTACGGGTTACAGGAAAGAACTGACAGGCCCGACACTACCAGCTAAGAGTAACGCTACCA 180
consensus_2069#1      ------------------------------------------------------------
                                                                                  

consensus_2069#0      GGGAACCGGGAATAGCCGTTTCGCGTACGGCTTATACGATCCAACAAAACAACCAACCAA 240
consensus_2069#1      ------------------------------------------------------------
                                                                                  

consensus_2069#0      CAGATATNCCCCGTTTACGAACGGNTAGAACGGCGTTAGGTACTGTCCGTTTATTTTAAA 300
consensus_2069#1      ---------------------------CAACCGATCGGGGAACT---TGGTCAGCCCGAG 30
                                                  *** *     ** ***    * * *     * 

consensus_2069#0      ACCTTTGANCGGTAAGC-CTTGGTTCCTGTTTTGGCCCTACCGGTCTAATTACCACAACT 359
consensus_2069#1      CCCGGTGCAGGCCACGCGCGTCGTAATCGTTTTGCGCTCCGTGTTGTTCAGGTCGAAGTT 90
                       **  **   *  * ** * * **    ******  *     * * *      *  *  *

consensus_2069#0      GGGCACACGACCCGGCCGGCANGGGCAAAGCT--AAACTATAGTCGCTNTACGTTGTAGA 417
consensus_2069#1      GAGC---CGGTCGAGCTCGCAGGTGCAGTTCTCCGGGCACTCGTC-CTGCACGCGCTGGA 146
                      * **   **  *  **  *** * ***   **     *  * *** **  ***   * **

consensus_2069#0      CCGAGNCGGGTTCTCTATATTGAACCATTTGNATCCATGGTAAACCCCTTTGANCTTGGT 477
consensus_2069#1      TCGTCTCCAGCTGGTGCAGCGGCAGGCTGTCGGTCGA--GTTGAACCAGTTGAA---GGT 201
                       **   *  * *         * *   * *   ** *  **  * **  ****    ***

consensus_2069#0      CCCGGACGGCAGGCTTTTACGAAGACGGTGACACACAAACTTTTGGCTCTACACCGGGCT 537
consensus_2069#1      GCGGTTCGTCAGGC-------AGAACGTCGACTCGGGATCCTTAAACTTGACGCCGCTCT 254
                       * *  ** *****       *  ***  *** *   * * **   **  ** ***  **

consensus_2069#0      TGGNTCANGGATTCCCTTGGGGTTACATTCTTTACANA-GCNCGCGCAACAAAGGAATTT 596
consensus_2069#1      TGAGCGATTCGAGCAGC--GACTTGCACAGCATGCCAACGTTTCCGCGTATGTCGAGTGA 312
                      **    *      *     *  ** **     * *  * *    ***       ** *  

consensus_2069#0      TAGTGACCCTAATTCCGCANCACAACCCAGCNCCCTACCGCCTAACCCGGTNTACTACGC 656
consensus_2069#1      AACTAGCACAAGCTTAGAATTACAACAAATAATCTTTCC----AAACAGTTATTACATTC 368
                       * *  * * *  *  * *  *****  *    * * **    ** * * * *   *  *

consensus_2069#0      GAATTACTTCCCAACGGCACTTAATAATACANGCAGGCCCCGACAACGTTTNTCCAACAG 716
consensus_2069#1      AATTTACGTTTCAATCCGATTCAA-AACAGATAGAGCTCCCGGCGATGGATCACACGCGC 427
                       * **** *  ***    * * ** ** * *   **  **** * * *  *  *   *  

consensus_2069#0      NGCAATTCCAACTTGGGGGACACATNCCCAAAAAAGGGGGAATTTGNGCTATTGGACACA 776
consensus_2069#1      CAAAATTTCGCACTACGAGATATATCAATTATCTTTACAGAACT--CGTTACCG-ACGCT 484
                         **** *    *  * ** * **     *        *** *   * **  * ** * 

consensus_2069#0      ACTACTTTGGTTAAACAGGCGTAACNCCGATGGTTCCATNCCGACAAGCGCCCCCCGGGC 836
consensus_2069#1      GTTTCTTACGGGTTACAGG-AAAGAACTGAC----------------------------- 514
                        * ***  *    *****   *   * **                              

consensus_2069#0      NNCATAACTCAGNGGGNACGATNGAACCAGGAAATTANTGGCAACACCCCCAACCAACAT 896
consensus_2069#1      ------------------------------------------------------------
                                                                                  

consensus_2069#0      ATNCATCGCCTACACATGCNTAGCAACTAGTCGGAGCTCTAGGTATCNTGACCCCCCATT 956
consensus_2069#1      ------------------------------------------------------------
                                                                                  

consensus_2069#0      TCCGGCACGGATACCCGCAAACATCTCTAGGGAGCTGNGCACTACCNTTATACCACATNG 1016
consensus_2069#1      ------------------------------------------------------------
                                                                                  

consensus_2069#0      GGCCATNCAGGGTNATTGTCNCCNNNANTNNCCACAACCCTNAACATAGGGGAAC 1071
consensus_2069#1      -------------------------------------------------------