cluster # 2074

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 2074 cluster # 2074 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2074#0 length = 680 sequences # 1

consensus_2074#1 length = 487 sequences # 1

consensusID : consensus_2074#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 680
fasta sequence

                              [GCCAGAATCGGCACGTGGACAAATCGGACAAACTCTCCGCGATCGANTGAAAATTAATATATCAAACGCAGCGCAATGTGTGAGTAGAATATTTGTAACAGCAAAAAAAACCAGCAGTGGCCTTACCAGAAAACAGACAACAGTTCCGGAGGTGTGTGTAAGCAAAATGGTGATAGAATGTGACAAGACAAAGAAGAAGCAGGGGCCAGAACGGCAACAGCAGTGTGTTCTGAAGAAGTTACCGAATGCAAAGACATATGATGCAATGATGAATGCAGCCTCCCGGGCTCTCCCGGTTTCGCCTGCCCATAATTGTGCAAACCATTGCTTGGAAAATCATGCAACTAAGAACTAAGGTTAGGTTTAGGAGTTCCAGCTAGCTGTTAATCGTATCTCAAAACTACCGAGAGTGTGTTATGTATATTAGATGATGAAAGCAGAGGGAGCTACATAGAAAGGACAAAAGCAATTAGTCGGGCCAGNGGCGGGACAGNACCGGAGAAACAAGGTGCTCTGACGGGAACATGACGGGCCAGCCGAGACAGGNGAAAAAGGCCCGTNGTTATGGCGCCATGGTTATGNTTTACAGTAAGCCAAGGCTTGGGGTGAAGAATTATCGATACGGGTACGACGGTAACGTTGAGGCGGATTAAGTGNATACACATTCATTACGATTAANN]

[+] EMBL BX467143             [GCCAGAATCGGCACGTGGACAAATCGGACAAACTCTCCGCGATCGANTGAAAATTAATATATCAAACGCAGCGCAATGTGTGAGTAGAATATTTGTAACAGCAAAAAAAACCAGCAGTGGCCTTACCAGAAAACAGACAACAGTTCCGGAGGTGTGTGTAAGCAAAATGGTGATAGAATGTGACAAGACAAAGAAGAAGCAGGGGCCAGAACGGCAACAGCAGTGTGTTCTGAAGAAGTTACCGAATGCAAAGACATATGATGCAATGATGAATGCAGCCTCCCGGGCTCTCCCGGTTTCGCCTGCCCATAATTGTGCAAACCATTGCTTGGAAAATCATGCAACTAAGAACTAAGGTTAGGTTTAGGAGTTCCAGCTAGCTGTTAATCGTATCTCAAAACTACCGAGAGTGTGTTATGTATATTAGATGATGAAAGCAGAGGGAGCTACATAGAAAGGACAAAAGCAATTAGTCGGGCCAGNGGCGGGACAGNACCGGAGAAACAAGGTGCTCTGACGGGAACATGACGGGCCAGCCGAGACAGGNGAAAAAGGCCCGTNGTTATGGCGCCATGGTTATGNTTTACAGTAAGCCAAGGCTTGGGGTGAAGAATTATCGATACGGGTACGACGGTAACGTTGAGGCGGATTAAGTGNATACACATTCATTACGATTAANN]




>consensus_2074#0
GCCAGAATCGGCACGTGGACAAATCGGACAAACTCTCCGCGATCGANTGAAAATTAATAT
ATCAAACGCAGCGCAATGTGTGAGTAGAATATTTGTAACAGCAAAAAAAACCAGCAGTGG
CCTTACCAGAAAACAGACAACAGTTCCGGAGGTGTGTGTAAGCAAAATGGTGATAGAATG
TGACAAGACAAAGAAGAAGCAGGGGCCAGAACGGCAACAGCAGTGTGTTCTGAAGAAGTT
ACCGAATGCAAAGACATATGATGCAATGATGAATGCAGCCTCCCGGGCTCTCCCGGTTTC
GCCTGCCCATAATTGTGCAAACCATTGCTTGGAAAATCATGCAACTAAGAACTAAGGTTA
GGTTTAGGAGTTCCAGCTAGCTGTTAATCGTATCTCAAAACTACCGAGAGTGTGTTATGT
ATATTAGATGATGAAAGCAGAGGGAGCTACATAGAAAGGACAAAAGCAATTAGTCGGGCC
AGNGGCGGGACAGNACCGGAGAAACAAGGTGCTCTGACGGGAACATGACGGGCCAGCCGA
GACAGGNGAAAAAGGCCCGTNGTTATGGCGCCATGGTTATGNTTTACAGTAAGCCAAGGC
TTGGGGTGAAGAATTATCGATACGGGTACGACGGTAACGTTGAGGCGGATTAAGTGNATA
CACATTCATTACGATTAANN

consensusID : consensus_2074#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 487
fasta sequence

                              [CCGCCCGGTTTCGCCTGCCCATAATTGTGCAAACCATTGCTTGGAAAATCATGCAACTAAGAACTAAGGTTTGGTTTAGGAGTTCCAGCTAGCTGTTAATCGTATCTCAAAACTACCGAGAGTGTGTTTATGTATATTAGATGATGAAAGCAGAGGGAGCTACATAGAAAGGACAAACAATTGTTGGGCAGGCGGGACAGACCGAGAACAAGTGCTCTGAGGAATGAGGCAGCGAGACAGCGAAAAGCCGTGTTTGCGCATGTTTTTTTACAGTAGCCAAGCTTGGTGAGATTATCGATCGGTAGAGTAAGTTGAGCGATAATGATAAATCATAATTAATATTAATATAGCGTGGATCATAGGCGTTACTGAACTATATATATATATATACACACAGAGACACACAAACCAGATCCCCTACCATGATATGATAGATAGCGTTTAGAGCCAAATGTTCGCAGATCAACTATTTATATGATGCAAACAC]

[+] EMBL BM601324             [CCGCCCGGTTTCGCCTGCCCATAATTGTGCAAACCATTGCTTGGAAAATCATGCAACTAAGAACTAAGGTTTGGTTTAGGAGTTCCAGCTAGCTGTTAATCGTATCTCAAAACTACCGAGAGTGTGTTTATGTATATTAGATGATGAAAGCAGAGGGAGCTACATAGAAAGGACAAACAATTGTTGGGCAGGCGGGACAGACCGAGAACAAGTGCTCTGAGGAATGAGGCAGCGAGACAGCGAAAAGCCGTGTTTGCGCATGTTTTTTTACAGTAGCCAAGCTTGGTGAGATTATCGATCGGTAGAGTAAGTTGAGCGATAATGATAAATCATAATTAATATTAATATAGCGTGGATCATAGGCGTTACTGAACTATATATATATATATACACACAGAGACACACAAACCAGATCCCCTACCATGATATGATAGATAGCGTTTAGAGCCAAATGTTCGCAGATCAACTATTTATATGATGCAAACAC]




>consensus_2074#1
CCGCCCGGTTTCGCCTGCCCATAATTGTGCAAACCATTGCTTGGAAAATCATGCAACTAA
GAACTAAGGTTTGGTTTAGGAGTTCCAGCTAGCTGTTAATCGTATCTCAAAACTACCGAG
AGTGTGTTTATGTATATTAGATGATGAAAGCAGAGGGAGCTACATAGAAAGGACAAACAA
TTGTTGGGCAGGCGGGACAGACCGAGAACAAGTGCTCTGAGGAATGAGGCAGCGAGACAG
CGAAAAGCCGTGTTTGCGCATGTTTTTTTACAGTAGCCAAGCTTGGTGAGATTATCGATC
GGTAGAGTAAGTTGAGCGATAATGATAAATCATAATTAATATTAATATAGCGTGGATCAT
AGGCGTTACTGAACTATATATATATATATACACACAGAGACACACAAACCAGATCCCCTA
CCATGATATGATAGATAGCGTTTAGAGCCAAATGTTCGCAGATCAACTATTTATATGATG
CAAACAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2074#0      GCCAGAATCGGCACGTGGACAAATCGGACAAACTCTCCGCGATCGANTGAAAATTAATAT 60
consensus_2074#1      ------------------------------------------------------------
                                                                                  

consensus_2074#0      ATCAAACGCAGCGCAATGTGTGAGTAGAATATTTGTAACAGCAAAAAAAACCAGCAGTGG 120
consensus_2074#1      ------------------------------------------------------------
                                                                                  

consensus_2074#0      CCTTACCAGAAAACAGACAACAGTTCCGGAGGTGTGTGTAAGCAAAATGGTGATAGAATG 180
consensus_2074#1      ------------------------------------------------------------
                                                                                  

consensus_2074#0      TGACAAGACAAAGAAGAAGCAGGGGCCAGAACGGCAACAGCAGTGTGTTCTGAAGAAGTT 240
consensus_2074#1      ------------------------------------------------------------
                                                                                  

consensus_2074#0      ACCGAATGCAAAGACATATGATGCAATGATGAATGCAGCCTCCCGGGCTCTCCCGGTTTC 300
consensus_2074#1      ------------------------------------------------CCGCCCGGTTTC 12
                                                                       * *********

consensus_2074#0      GCCTGCCCATAATTGTGCAAACCATTGCTTGGAAAATCATGCAACTAAGAACTAAGGTTA 360
consensus_2074#1      GCCTGCCCATAATTGTGCAAACCATTGCTTGGAAAATCATGCAACTAAGAACTAAGGTTT 72
                      *********************************************************** 

consensus_2074#0      GGTTTAGGAGTTCCAGCTAGCTGTTAATCGTATCTCAAAACTACCGAGAGTGTGTT-ATG 419
consensus_2074#1      GGTTTAGGAGTTCCAGCTAGCTGTTAATCGTATCTCAAAACTACCGAGAGTGTGTTTATG 132
                      ******************************************************** ***

consensus_2074#0      TATATTAGATGATGAAAGCAGAGGGAGCTACATAGAAAGGACAAA-AGCAATTAGTCGGG 478
consensus_2074#1      TATATTAGATGATGAAAGCAGAGGGAGCTACATAGAAAGGACAAACAATTGTTGGGCAGG 192
                      ********************************************* *    ** * * **

consensus_2074#0      C----CAGNGGCGGGACAGNA--CCGGAGAAACAAGGTGCTCTGACGGGAACATGACGGG 532
consensus_2074#1      CGGGACAGACCGAGAACAAGTGCTCTGAGGAATGAGGCAGCGAGACAGCGAAAAGCCGTG 252
                      *    ***     * ***      * *** **  ***      *** *  * * * ** *

consensus_2074#0      CCAGCCGAGACAGGNGAAAAAGGCCCGTNGTTATGGCGCCATGGTTATGNTTTACAGTAA 592
consensus_2074#1      TTTGCGCATGTTTTTTTACAGTAGCCAAGCTT--GGTGAGATTATCGATCGGTAGAGTAA 310
                         **  *         * *    **    **  ** *  **  *       ** *****

consensus_2074#0      GCCAAG-GCTTGGGGTGAAGAATTATCGATACGGGTACGACG-GTAACGTTGAGGCGGAT 650
consensus_2074#1      GTTGAGCGATAATGATAAATCATAATTAATATTAATATAGCGTGGATCATAGGCGTTACT 370
                      *   ** * *   * * **  ** **  ***    **   ** * * * * *  *    *

consensus_2074#0      TAAGTGNATACACATTCATTACGATTAANN------------------------------ 680
consensus_2074#1      GAACTATATATATATATATACACACAGAGACACACAAACCAGATCCCCTACCATGATATG 430
                       ** *  *** * **  **    *   *                                

consensus_2074#0      ---------------------------------------------------------
consensus_2074#1      ATAGATAGCGTTTAGAGCCAAATGTTCGCAGATCAACTATTTATATGATGCAAACAC 487