cluster # 2076

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Anopheles gambiae
cluster # 2076 cluster # 2076 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2076#0 length = 678 sequences # 1

consensus_2076#1 length = 527 sequences # 1

consensusID : consensus_2076#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 678
fasta sequence

                              [CCGGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAAAGAGAAATAGAGAGAGAGAAAGAGATAGAAGAGAGAGAGAAAGAGAGAAAGAGAAAGAAGAGAGAGAGAAAGAGAGAGAGAGAAAGAAAGAGAGAAAGAAGAGAGAGAAAGAGAGAGAAAGAGAGAGAAAGAGAGAGAAAGAAGAGAGAGAAAGAGAGAGAAAGAAAGAGAGAAAGAAGAAAGAGAAAGGAGAGAGAAAAAAAGAGAGGAAAAAAGAGAGAGAAAAGAGAAGGGAGAGAGAGAGAAAGATGATTTTTGTTCTTATATTCATTTAATTACTGTTTCACCTTTCTTTATTATCGACCCGTCGCTACTAGTTAGTGACGCAAAGAATTACCATTTCAACTGCAACCTTGAAAGGCGGAAGCAACAAAAGAAAGGGGGATGTCCTCTATTAAGTGTTAAACACGCCCCAACGCCCCCCGTCGTTACCTACTTTTTTGTATTTTTTTTTGCGCTTTACTTTCAATCGATACAGTTCTTCCTGCCACGCGCGCTCCCTCCCTCCCTACACATTGCTGACAACTAATTCGAAGCTCT]

[+] EMBL BM601304             [CCGGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAAAGAGAAATAGAGAGAGAGAAAGAGATAGAAGAGAGAGAGAAAGAGAGAAAGAGAAAGAAGAGAGAGAGAAAGAGAGAGAGAGAAAGAAAGAGAGAAAGAAGAGAGAGAAAGAGAGAGAAAGAGAGAGAAAGAGAGAGAAAGAAGAGAGAGAAAGAGAGAGAAAGAAAGAGAGAAAGAAGAAAGAGAAAGGAGAGAGAAAAAAAGAGAGGAAAAAAGAGAGAGAAAAGAGAAGGGAGAGAGAGAGAAAGATGATTTTTGTTCTTATATTCATTTAATTACTGTTTCACCTTTCTTTATTATCGACCCGTCGCTACTAGTTAGTGACGCAAAGAATTACCATTTCAACTGCAACCTTGAAAGGCGGAAGCAACAAAAGAAAGGGGGATGTCCTCTATTAAGTGTTAAACACGCCCCAACGCCCCCCGTCGTTACCTACTTTTTTGTATTTTTTTTTGCGCTTTACTTTCAATCGATACAGTTCTTCCTGCCACGCGCGCTCCCTCCCTCCCTACACATTGCTGACAACTAATTCGAAGCTCT]




>consensus_2076#0
CCGGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAG
AAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGA
GAAAGAAGAGAGAGAAAAAGAGAAATAGAGAGAGAGAAAGAGATAGAAGAGAGAGAGAAA
GAGAGAAAGAGAAAGAAGAGAGAGAGAAAGAGAGAGAGAGAAAGAAAGAGAGAAAGAAGA
GAGAGAAAGAGAGAGAAAGAGAGAGAAAGAGAGAGAAAGAAGAGAGAGAAAGAGAGAGAA
AGAAAGAGAGAAAGAAGAAAGAGAAAGGAGAGAGAAAAAAAGAGAGGAAAAAAGAGAGAG
AAAAGAGAAGGGAGAGAGAGAGAAAGATGATTTTTGTTCTTATATTCATTTAATTACTGT
TTCACCTTTCTTTATTATCGACCCGTCGCTACTAGTTAGTGACGCAAAGAATTACCATTT
CAACTGCAACCTTGAAAGGCGGAAGCAACAAAAGAAAGGGGGATGTCCTCTATTAAGTGT
TAAACACGCCCCAACGCCCCCCGTCGTTACCTACTTTTTTGTATTTTTTTTTGCGCTTTA
CTTTCAATCGATACAGTTCTTCCTGCCACGCGCGCTCCCTCCCTCCCTACACATTGCTGA
CAACTAATTCGAAGCTCT

consensusID : consensus_2076#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 527
fasta sequence

                              [CCGCGGACGCGTGGGCGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAGAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAGAGAAAGAAGAGAGAAAGAAGAGAGAGAGGAAGAAGAGAGAGAAAGAAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAAAGAGAAAGAAGAGAGAAAGAGAGATAGAGAGAGAGAGAAAAAAGAGAGCGATGATTTTTTTCTTATATTCGTTTAATTACTGTTTCACCTTTCTCTATTATCGACCCGTCGCTACTAATTAGTGACGCAAAGAATTACCATTTCAACTGCAACCTTGAAAGGTGGAAGCAACAAAGGAAAAGGGGGGTGTCCTCTATTAAGTGTTAA]

[+] EMBL BM612529             [CCGCGGACGCGTGGGCGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAGAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAGAGAAAGAAGAGAGAAAGAAGAGAGAGAGGAAGAAGAGAGAGAAAGAAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAAAGAGAAAGAAGAGAGAAAGAGAGATAGAGAGAGAGAGAAAAAAGAGAGCGATGATTTTTTTCTTATATTCGTTTAATTACTGTTTCACCTTTCTCTATTATCGACCCGTCGCTACTAATTAGTGACGCAAAGAATTACCATTTCAACTGCAACCTTGAAAGGTGGAAGCAACAAAGGAAAAGGGGGGTGTCCTCTATTAAGTGTTAA]




>consensus_2076#1
CCGCGGACGCGTGGGCGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGA
GAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAA
AGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAGAGAGA
GAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAGAGAAAGAAGAGAGAAAGAAGAGAG
AGAGGAAGAAGAGAGAGAAAGAAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAA
GAGAGAGAAAGAAGAGAGAAAGAGAAAGAAGAGAGAAAGAGAGATAGAGAGAGAGAGAAA
AAAGAGAGCGATGATTTTTTTCTTATATTCGTTTAATTACTGTTTCACCTTTCTCTATTA
TCGACCCGTCGCTACTAATTAGTGACGCAAAGAATTACCATTTCAACTGCAACCTTGAAA
GGTGGAAGCAACAAAGGAAAAGGGGGGTGTCCTCTATTAAGTGTTAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2076#0      CCGGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAG 60
consensus_2076#1      CCGCGGACGCGTGGGCGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGA 60
                      ***   *   * * * ** * *  ****************** * *  ***** ****  

consensus_2076#0      AAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGA 120
consensus_2076#1      GAGAAAGA-AGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGA 119
                       *** *** * ***  *   *** ****   ***** * *  ******************

consensus_2076#0      GAAAGAAGAGAGAGAAAAAGAGAAATAGAGAGAGAGAA-AGAGATAGAAGAGAGAGAGAA 179
consensus_2076#1      AAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAGAGAG 179
                       * *  ***** **** *    **  ******* **** ***** ************** 

consensus_2076#0      AGAGAGAA-AGAGAAAGAAGAGAGAGAGAAAGAGAGAGAGAGAAAGAAAGAGAGAAAGAA 238
consensus_2076#1      AGAAAGAAGAGAGAAAGAAGAGAGAAAGAA---GAGAGAGAGAAAGAA-GAGAGAAAGAA 235
                      *** **** **************** ****   *************** ***********

consensus_2076#0      GAGAGAGAAAGAGAGAGAAAGAGAGAGAAAGAGAGAGAAAGAAGAGAGAGAAAGAGAGAG 298
consensus_2076#1      GAGAGAGAGGAAGA-AGAGAGAGAAAGA---AGAGAGAAAGAAGAGAGAGAAAGA----- 286
                      ********   *** *** ***** ***   ************************     

consensus_2076#0      AAAGAAAGAGAGAAAGAAGAAAGAGAAAGGAGAGAGAAAAAAAGAGAGGAAAAAAGAGAG 358
consensus_2076#1      ----AGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAAAGAGAAAGAAGAGAGAAAGAGA 342
                          * ************** ******** ********* * * *** ** * **     

consensus_2076#0      AGAAAAGAGAAGGGAGAGAGAGAGAAAGATGATTTTTGTTCTTATATTCATTTAATTACT 418
consensus_2076#1      GATAGAGAGAGAGAGAAAAAAGAGAGCGATGATTTTT-TTCTTATATTCGTTTAATTACT 401
                         * *****  *   * * *****  ********** *********** **********

consensus_2076#0      GTTTCACCTTTCTTTATTATCGACCCGTCGCTACTAGTTAGTGACGCAAAGAATTACCAT 478
consensus_2076#1      GTTTCACCTTTCTCTATTATCGACCCGTCGCTACTAATTAGTGACGCAAAGAATTACCAT 461
                      ************* ********************** ***********************

consensus_2076#0      TTCAACTGCAACCTTGAAAGGCGGAAGCAACAAAAGAAA-GGGGGATGTCCTCTATTAAG 537
consensus_2076#1      TTCAACTGCAACCTTGAAAGGTGGAAGCAACAAAGGAAAAGGGGGGTGTCCTCTATTAAG 521
                      ********************* ************ **** ***** **************

consensus_2076#0      TGTTAAACACGCCCCAACGCCCCCCGTCGTTACCTACTTTTTTGTATTTTTTTTTGCGCT 597
consensus_2076#1      TGTTAA------------------------------------------------------ 527
                      ******                                                      

consensus_2076#0      TTACTTTCAATCGATACAGTTCTTCCTGCCACGCGCGCTCCCTCCCTCCCTACACATTGC 657
consensus_2076#1      ------------------------------------------------------------
                                                                                  

consensus_2076#0      TGACAACTAATTCGAAGCTCT 678
consensus_2076#1      ---------------------