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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_208#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence
[CCGCCCACGCGTCCGGTGCTAGTTTCTACCGAAAATGCGTACGCTAGCGGTTTTGTTTGCCGCCTTTCTGGCCGTTAACGCCAAGGTGTACTTTGAAGAAGGATTCAAAGACGATTCGTGGCAAAAGACCTGGGTCCAGAGCGAGCACAAGGGTGTCGAGTACGGTAAATTTGTGCACACTGCCGGAAAGTTCTACAATGATGCCGAAGCCGACAAAGGTCTGCAAACGTCGCAGGATGCCCGTTTCTACGCTCTGTCGAACAAGTTTACGCCGTTCTCGAACAAGGACGATACGCTCGTCATCCAGTTCTCCGTGAAGCACGAGCAGAACATTGACTGCGGCGGTGGCTACCTGAAGGTGTTCGACTGCTCCGTGGACCAGAAGGATCTGCACGGCGAGACGCCGTACCTGGTCATGTTCGGACCGGATATCTGCGGACCGGGCACGAAGAAGGTGCACGTGATCTTCAGCTACAAGGGCAAGAACCATCTGATCAACAAGGACATCCGCTGCAAGGACGACGTGTTCACCCACTTCTACACGCTGGTCGTGCGCGCCGACAACACGTACGAAGTGCTGATTGACAACGAGAAGGTTGAGTCGGGCAGCCTGGAGGATGACTGGGACTTCCTGCCGCCGAAGAAGATCAAGGATCCGGAAGCGAAGAAGCC]
[+] EMBL BM594942 [CCGCCCACGCGTCCGGTGCTAGTTTCTACCGAAAATGCGTACGCTAGCGGTTTTGTTTGCCGCCTTTCTGGCCGTTAACGCCAAGGTGTACTTTGAAGAAGGATTCAAAGACGATTCGTGGCAAAAGACCTGGGTCCAGAGCGAGCACAAGGGTGTCGAGTACGGTAAATTTGTGCACACTGCCGGAAAGTTCTACAATGATGCCGAAGCCGACAAAGGTCTGCAAACGTCGCAGGATGCCCGTTTCTACGCTCTGTCGAACAAGTTTACGCCGTTCTCGAACAAGGACGATACGCTCGTCATCCAGTTCTCCGTGAAGCACGAGCAGAACATTGACTGCGGCGGTGGCTACCTGAAGGTGTTCGACTGCTCCGTGGACCAGAAGGATCTGCACGGCGAGACGCCGTACCTGGTCATGTTCGGACCGGATATCTGCGGACCGGGCACGAAGAAGGTGCACGTGATCTTCAGCTACAAGGGCAAGAACCATCTGATCAACAAGGACATCCGCTGCAAGGACGACGTGTTCACCCACTTCTACACGCTGGTCGTGCGCGCCGACAACACGTACGAAGTGCTGATTGACAACGAGAAGGTTGAGTCGGGCAGCCTGGAGGATGACTGGGACTTCCTGCCGCCGAAGAAGATCAAGGATCCGGAAGCGAAGAAGCC]
consensusID : consensus_208#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 361 fasta sequence
[AAATGAGGATTCAAAGAGAGAAAGAGAGGGGTTATAGTGACTTTGGAGGTGCTTTTATACGTAAGCAGCTTGAGCCGTTGTGTTTGAAAACGTTTATAGAAAGGTAAGGGATAAGGCGAGAGGATCAGTGCATATACATTCTCTCTATCTCTCAGTAGGACAATCGTGATATGGACAGGGAAATCCCTAATGCGTAATGCATCAGCAAAGTGACTGCTGTGTGGTGCCGCAATGTTTCACCTACTGTACTGCCCCTTCATGTCGAAGGGGTTCATGTTAGGNTCCATGACCAATGAAGGTAAAACACAAAACTCCCCGACCTTTCAACCGNTTCACATCGAGATAAGCGATGTGGNATCAT]
[+] EMBL BX621175 [AAATGAGGATTCAAAGAGAGAAAGAGAGGGGTTATAGTGACTTTGGAGGTGCTTTTATACGTAAGCAGCTTGAGCCGTTGTGTTTGAAAACGTTTATAGAAAGGTAAGGGATAAGGCGAGAGGATCAGTGCATATACATTCTCTCTATCTCTCAGTAGGACAATCGTGATATGGACAGGGAAATCCCTAATGCGTAATGCATCAGCAAAGTGACTGCTGTGTGGTGCCGCAATGTTTCACCTACTGTACTGCCCCTTCATGTCGAAGGGGTTCATGTTAGGNTCCATGACCAATGAAGGTAAAACACAAAACTCCCCGACCTTTCAACCGNTTCACATCGAGATAAGCGATGTGGNATCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_208#0 CCGCCCACGCGTCCGGTGCTAGTTTCTACCGAAAATGCGTACGCTAGCGGTTTTGTTTGC 60
consensus_208#1 ------------------------------------------------------------
consensus_208#0 CGCCTTTCTGGCCGTTAACGCCAAGGTGTACTTTGAAGAAGGATTCAAAGACGATTCGTG 120
consensus_208#1 ----------------------------------AAATGAGGATTCAAAGA--------- 17
** ************
consensus_208#0 GCAAAAGACCTGGGTCCAGAGCGAGCACAAGGGTGTCGAGTACGGTAAATTTGTGCACAC 180
consensus_208#1 GAGAAAGAGAGGGGTT-ATAGTGACTTTGGAGGTGC----TTTTATACGTAAGCAGCTTG 72
* ***** **** * ** ** **** * ** * *
consensus_208#0 TGCCGGAAAGTTCTACAATGATGCCGAAGCCGACAAAGGTCTGCAAACGTCGCAGGATGC 240
consensus_208#1 AGCCGTTGTGTTTGAAAACGTTTATAGAAAGGTAAGGGAT-----AAGGCGAGAGGATCA 127
**** *** * ** * * * * * * * ** * *****
consensus_208#0 CCGTTTCTACGCTCTGTCGAACAAGTTTACGCCGTTCTCGAACAAGGACGATACGCTC-- 298
consensus_208#1 GTGCATATACATTCTCTC---------TATCTCTCAGTAGGACAATCGTGATATGGACAG 178
* * *** *** ** ** * * * **** **** * *
consensus_208#0 GTCATCCAGTTCTCCGTGAAGCACGAGCAGAACATTGACTGCGGCG-GTGGCTAC-CTGA 356
consensus_208#1 GGAAATCCCTAATGCGTAATGCATCAGCAAAGTGACTGCTGTGTGGTGCCGCAATGTTTC 238
* * * * * *** * *** **** * *** * * * ** * *
consensus_208#0 AGGTGTTCGACTGCTCCGTGGACCAGAAGGATCTGCACGGCGAGACGCCGTACCTGGTCA 416
consensus_208#1 ACCTACTGTACTGCCCCTTCATGTCGAAGGGGTT-CATG-TTAGGNTCCATGACCAATGA 296
* * * ***** ** * ***** * ** * ** ** * * * *
consensus_208#0 TGTTCGGACCGGATATCTGCGGACCGGGCACGAAGAAGGTGCACGTGATCTTCAGCTACA 476
consensus_208#1 AGGTAAAACACAAAACTCCCCGACCTTTCA----ACCGNTTCACATCGAGATAAGCGATG 352
* * ** * * * **** ** * * *** * * *** *
consensus_208#0 AGGGCAAGAACCATCTGATCAACAAGGACATCCGCTGCAAGGACGACGTGTTCACCCACT 536
consensus_208#1 TG-----GNATCAT---------------------------------------------- 361
* * * ***
consensus_208#0 TCTACACGCTGGTCGTGCGCGCCGACAACACGTACGAAGTGCTGATTGACAACGAGAAGG 596
consensus_208#1 ------------------------------------------------------------
consensus_208#0 TTGAGTCGGGCAGCCTGGAGGATGACTGGGACTTCCTGCCGCCGAAGAAGATCAAGGATC 656
consensus_208#1 ------------------------------------------------------------
consensus_208#0 CGGAAGCGAAGAAGCC 672
consensus_208#1 ----------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||