cluster # 2086

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Anopheles gambiae
cluster # 2086 cluster # 2086 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2086#0 length = 633 sequences # 1

consensus_2086#1 length = 613 sequences # 1

consensusID : consensus_2086#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 633
fasta sequence

                              [CCGACAGATTACGCCGTACCGACAGTGTGTGTATCCTGCCGTGGCTTCAGGCTTCAAAAGTTCAAACCCACAAAAACCAAATCAATCCCCCAGGAAAACAAAAGTAAACCATCAAAGCAATCGACGGTGGGGAAGACAGTAACAGTGCGTCTACCGCGGAGTCCGCAGTCGGAGAAGGTTTTTGACACATACGCACCCAAACGCCGTATAGTGTGTTACGTCAGCTGAATGAGTGAGTGGAAAGGAGAAAAAACCAACAGCAACAACAACAGAAAGGAAAATCCAAATTTTGCCGGTTCAAAAGCAGAAGCAACATTTAAGAGAAACGGTACCTAATTCTGCACTGAAAACAGTGCTCTAGTGCTCTAGGTGAAGTTTACAAACGTAAATAATATTGTGCAAGTTTCTGTGTGAGTGCATCAGTGGTCCTTAAAAAAATACCACCCAAACCGCCCAAGGTTGTGGCCGACAAGTGACGAAGAAGCGAGAGGCATCTTCTTGGAAGAATGTTTGTGAAGGAAGAAAAACGGTGCTAAAATTGCAAATGCAAGCATCCGAGCGTGAAAGGCATCGGAACGCCAGTTCTTGGGCCAGTATATCCTGGTGACCCGATTTAAAACCGAGCGCCCCTGT]

[+] EMBL BM591246             [CCGACAGATTACGCCGTACCGACAGTGTGTGTATCCTGCCGTGGCTTCAGGCTTCAAAAGTTCAAACCCACAAAAACCAAATCAATCCCCCAGGAAAACAAAAGTAAACCATCAAAGCAATCGACGGTGGGGAAGACAGTAACAGTGCGTCTACCGCGGAGTCCGCAGTCGGAGAAGGTTTTTGACACATACGCACCCAAACGCCGTATAGTGTGTTACGTCAGCTGAATGAGTGAGTGGAAAGGAGAAAAAACCAACAGCAACAACAACAGAAAGGAAAATCCAAATTTTGCCGGTTCAAAAGCAGAAGCAACATTTAAGAGAAACGGTACCTAATTCTGCACTGAAAACAGTGCTCTAGTGCTCTAGGTGAAGTTTACAAACGTAAATAATATTGTGCAAGTTTCTGTGTGAGTGCATCAGTGGTCCTTAAAAAAATACCACCCAAACCGCCCAAGGTTGTGGCCGACAAGTGACGAAGAAGCGAGAGGCATCTTCTTGGAAGAATGTTTGTGAAGGAAGAAAAACGGTGCTAAAATTGCAAATGCAAGCATCCGAGCGTGAAAGGCATCGGAACGCCAGTTCTTGGGCCAGTATATCCTGGTGACCCGATTTAAAACCGAGCGCCCCTGT]




>consensus_2086#0
CCGACAGATTACGCCGTACCGACAGTGTGTGTATCCTGCCGTGGCTTCAGGCTTCAAAAG
TTCAAACCCACAAAAACCAAATCAATCCCCCAGGAAAACAAAAGTAAACCATCAAAGCAA
TCGACGGTGGGGAAGACAGTAACAGTGCGTCTACCGCGGAGTCCGCAGTCGGAGAAGGTT
TTTGACACATACGCACCCAAACGCCGTATAGTGTGTTACGTCAGCTGAATGAGTGAGTGG
AAAGGAGAAAAAACCAACAGCAACAACAACAGAAAGGAAAATCCAAATTTTGCCGGTTCA
AAAGCAGAAGCAACATTTAAGAGAAACGGTACCTAATTCTGCACTGAAAACAGTGCTCTA
GTGCTCTAGGTGAAGTTTACAAACGTAAATAATATTGTGCAAGTTTCTGTGTGAGTGCAT
CAGTGGTCCTTAAAAAAATACCACCCAAACCGCCCAAGGTTGTGGCCGACAAGTGACGAA
GAAGCGAGAGGCATCTTCTTGGAAGAATGTTTGTGAAGGAAGAAAAACGGTGCTAAAATT
GCAAATGCAAGCATCCGAGCGTGAAAGGCATCGGAACGCCAGTTCTTGGGCCAGTATATC
CTGGTGACCCGATTTAAAACCGAGCGCCCCTGT

consensusID : consensus_2086#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 613
fasta sequence

                              [CCGCCCACGCGTCCGCAAATCTTCCGACCGGACGGTGTGCGTGCTTTGGGTTCGTCCCGCTGGTTTGTGGCAGATGACACTTGTGACTTCGCGATCGCGCAAACTGTTTCGAAAAAGGACGCACGGCCCCAATCGTTTCCATTGCGCTGTGCAAAGGTTCCCAGGAGAAATAAAAAAATAACCGTATAGTGTGTTACGTCAGCTGAATGAGTGAGTGGAAAGGAGAAAAAACCAACAGCAACAACAACAGAAAGGAAAATCCAAATTTTGCCGGTTCAAAAGCAGAAGCAACATTTAAGAGAAACGGTACCTAATTCTGCACTGAAAACAGTGCTCTAGTGCTCTAGGTGAAGTTTACAAACGTAAATAATATTGTGCAAGTTTCTGTGTGAGTGCATCAGTGGTCCTTAAAAAAATACCACCCAAACCGCCCAAGGTTGTGGCCGACAAGTGACGAAGAAGCGAGAGGCATCTTCTTGGAAGAATGTTTGTGAAGGAAGAAAAACGGTGCTAAAATTGCAAATGCAAGCATCCGAGCGTGAAAGGCATCGGAAACGCCAGTTCTTGGGCCAGTATATCCTGGTGACCCGATTTAAAACCGAGCGCCCCTGTA]

[+] EMBL BM651856             [CCGCCCACGCGTCCGCAAATCTTCCGACCGGACGGTGTGCGTGCTTTGGGTTCGTCCCGCTGGTTTGTGGCAGATGACACTTGTGACTTCGCGATCGCGCAAACTGTTTCGAAAAAGGACGCACGGCCCCAATCGTTTCCATTGCGCTGTGCAAAGGTTCCCAGGAGAAATAAAAAAATAACCGTATAGTGTGTTACGTCAGCTGAATGAGTGAGTGGAAAGGAGAAAAAACCAACAGCAACAACAACAGAAAGGAAAATCCAAATTTTGCCGGTTCAAAAGCAGAAGCAACATTTAAGAGAAACGGTACCTAATTCTGCACTGAAAACAGTGCTCTAGTGCTCTAGGTGAAGTTTACAAACGTAAATAATATTGTGCAAGTTTCTGTGTGAGTGCATCAGTGGTCCTTAAAAAAATACCACCCAAACCGCCCAAGGTTGTGGCCGACAAGTGACGAAGAAGCGAGAGGCATCTTCTTGGAAGAATGTTTGTGAAGGAAGAAAAACGGTGCTAAAATTGCAAATGCAAGCATCCGAGCGTGAAAGGCATCGGAAACGCCAGTTCTTGGGCCAGTATATCCTGGTGACCCGATTTAAAACCGAGCGCCCCTGTA]




>consensus_2086#1
CCGCCCACGCGTCCGCAAATCTTCCGACCGGACGGTGTGCGTGCTTTGGGTTCGTCCCGC
TGGTTTGTGGCAGATGACACTTGTGACTTCGCGATCGCGCAAACTGTTTCGAAAAAGGAC
GCACGGCCCCAATCGTTTCCATTGCGCTGTGCAAAGGTTCCCAGGAGAAATAAAAAAATA
ACCGTATAGTGTGTTACGTCAGCTGAATGAGTGAGTGGAAAGGAGAAAAAACCAACAGCA
ACAACAACAGAAAGGAAAATCCAAATTTTGCCGGTTCAAAAGCAGAAGCAACATTTAAGA
GAAACGGTACCTAATTCTGCACTGAAAACAGTGCTCTAGTGCTCTAGGTGAAGTTTACAA
ACGTAAATAATATTGTGCAAGTTTCTGTGTGAGTGCATCAGTGGTCCTTAAAAAAATACC
ACCCAAACCGCCCAAGGTTGTGGCCGACAAGTGACGAAGAAGCGAGAGGCATCTTCTTGG
AAGAATGTTTGTGAAGGAAGAAAAACGGTGCTAAAATTGCAAATGCAAGCATCCGAGCGT
GAAAGGCATCGGAAACGCCAGTTCTTGGGCCAGTATATCCTGGTGACCCGATTTAAAACC
GAGCGCCCCTGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2086#0      CCGACAGATTACGCCGTACCGACAGTGTGTGTATCCTGCCGTGGCTTCAGGCTTCAAAAG 60
consensus_2086#1      -------------CCGC-CCACGCGTCCGCAAATCTTCCGACCGGAC--GGTGTGCGTGC 44
                                   ***  **    **  *   *** * *    *     **  *      

consensus_2086#0      TTCAAACCCACAAAAACCAAATCAATCCCCCAGGAAAACAAAAGTAAACCATCAAAGCAA 120
consensus_2086#1      TTTGGGTTCGT-----CCCGCTGGTTTGTGGCAGATGACACTTGTGACTTCGCGATCGCG 99
                      **      *       **   *   *       **  ***   ** *     * *     

consensus_2086#0      TCGACGGTGGGGAAGACAGTAACAGTGCGTCTACCGCGGAGTCCGCAGTCGGAGAAGGTT 180
consensus_2086#1      CAAACTGTTTCGAAAAAGGACGCACGGCCCCAATCGTTTCCATTGCGCTGTGCAAAGGTT 159
                         ** **   *** *  *   **  **  * * **        **  *  *  ******

consensus_2086#0      TTTGACACATACGCACCCAAACGCCGTATAGTGTGTTACGTCAGCTGAATGAGTGAGTGG 240
consensus_2086#1      CCCAGGAGAAATAAAAA-AATAACCGTATAGTGTGTTACGTCAGCTGAATGAGTGAGTGG 218
                            * * *   *   **   *************************************

consensus_2086#0      AAAGGAGAAAAAACCAACAGCAACAACAACAGAAAGGAAAATCCAAATTTTGCCGGTTCA 300
consensus_2086#1      AAAGGAGAAAAAACCAACAGCAACAACAACAGAAAGGAAAATCCAAATTTTGCCGGTTCA 278
                      ************************************************************

consensus_2086#0      AAAGCAGAAGCAACATTTAAGAGAAACGGTACCTAATTCTGCACTGAAAACAGTGCTCTA 360
consensus_2086#1      AAAGCAGAAGCAACATTTAAGAGAAACGGTACCTAATTCTGCACTGAAAACAGTGCTCTA 338
                      ************************************************************

consensus_2086#0      GTGCTCTAGGTGAAGTTTACAAACGTAAATAATATTGTGCAAGTTTCTGTGTGAGTGCAT 420
consensus_2086#1      GTGCTCTAGGTGAAGTTTACAAACGTAAATAATATTGTGCAAGTTTCTGTGTGAGTGCAT 398
                      ************************************************************

consensus_2086#0      CAGTGGTCCTTAAAAAAATACCACCCAAACCGCCCAAGGTTGTGGCCGACAAGTGACGAA 480
consensus_2086#1      CAGTGGTCCTTAAAAAAATACCACCCAAACCGCCCAAGGTTGTGGCCGACAAGTGACGAA 458
                      ************************************************************

consensus_2086#0      GAAGCGAGAGGCATCTTCTTGGAAGAATGTTTGTGAAGGAAGAAAAACGGTGCTAAAATT 540
consensus_2086#1      GAAGCGAGAGGCATCTTCTTGGAAGAATGTTTGTGAAGGAAGAAAAACGGTGCTAAAATT 518
                      ************************************************************

consensus_2086#0      GCAAATGCAAGCATCCGAGCGTGAAAGGCATCGGAA-CGCCAGTTCTTGGGCCAGTATAT 599
consensus_2086#1      GCAAATGCAAGCATCCGAGCGTGAAAGGCATCGGAAACGCCAGTTCTTGGGCCAGTATAT 578
                      ************************************ ***********************

consensus_2086#0      CCTGGTGACCCGATTTAAAACCGAGCGCCCCTGT- 633
consensus_2086#1      CCTGGTGACCCGATTTAAAACCGAGCGCCCCTGTA 613
                      **********************************