cluster # 2096

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Anopheles gambiae
cluster # 2096 cluster # 2096 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2096#0 length = 805 sequences # 1

consensus_2096#1 length = 678 sequences # 1

consensusID : consensus_2096#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 805
fasta sequence

                              [TCACGCACGAACTCGCCGAGGATTAAAAGTGGNATCGAGAGCTCTAGAGAANCTCTGCAGCGAGGAATCNGTCCTATCCGGATAGATGCTTTCGCGATCGGGAAAACTGATGCGGGCCAGTAGGATGAACAACAACACTAACTGGTGGCTATTGGTACCTATTATACTATTCTGGCTTNTGGTTGTGCGAAACTCCCTTGACCCTATTCTTATGGGNAAGAGAACTTTATATGCTGGGAATCGGACTACTATGTGCATNNCTTATTTGGACAGGACTTATATGGACAATTTCCCTAAAGTTACGGACTANTTCTTCCCGCACACGGGTTGGCCTTAATAAGGAGTTCCCCAAAATTCCGCCCATTGTAAACGGCGACCAAGGGTTGTCCCACTATATTACCCCCTTGGGTTAAACGGGACANACAACATCTNTCCACAATTCNCAACACGTTAGTTTCTCCCCAAAAACCTTTCACCCTNTTAAATTGTAANTANAANACTTATTTCCCCCCTNTGGTAGAAAAAAAAAAACCCCCCCCCCCGTATAAAAATNNTTTGGTTACAAAAAAGAGGGGAAGAACCCCAACATTTAAAANTTNTCCCCACAAACCAACCTCTCTCCANTCNCGTAGCGTCACACCTATTAAGCNTCGATGTACTCACCCCCCCCCNTCTCTTACATCAATAATCATCAATACNNCACAAACTATGCTTTCCCCACACACNTCTGNCTANCCACACACACAACACACCCCCCATATGTNGTCACATCTANNTCTACATACATTAATACCCCCCTCTACCA]

[+] EMBL AL933233             [TCACGCACGAACTCGCCGAGGATTAAAAGTGGNATCGAGAGCTCTAGAGAANCTCTGCAGCGAGGAATCNGTCCTATCCGGATAGATGCTTTCGCGATCGGGAAAACTGATGCGGGCCAGTAGGATGAACAACAACACTAACTGGTGGCTATTGGTACCTATTATACTATTCTGGCTTNTGGTTGTGCGAAACTCCCTTGACCCTATTCTTATGGGNAAGAGAACTTTATATGCTGGGAATCGGACTACTATGTGCATNNCTTATTTGGACAGGACTTATATGGACAATTTCCCTAAAGTTACGGACTANTTCTTCCCGCACACGGGTTGGCCTTAATAAGGAGTTCCCCAAAATTCCGCCCATTGTAAACGGCGACCAAGGGTTGTCCCACTATATTACCCCCTTGGGTTAAACGGGACANACAACATCTNTCCACAATTCNCAACACGTTAGTTTCTCCCCAAAAACCTTTCACCCTNTTAAATTGTAANTANAANACTTATTTCCCCCCTNTGGTAGAAAAAAAAAAACCCCCCCCCCCGTATAAAAATNNTTTGGTTACAAAAAAGAGGGGAAGAACCCCAACATTTAAAANTTNTCCCCACAAACCAACCTCTCTCCANTCNCGTAGCGTCACACCTATTAAGCNTCGATGTACTCACCCCCCCCCNTCTCTTACATCAATAATCATCAATACNNCACAAACTATGCTTTCCCCACACACNTCTGNCTANCCACACACACAACACACCCCCCATATGTNGTCACATCTANNTCTACATACATTAATACCCCCCTCTACCA]




>consensus_2096#0
TCACGCACGAACTCGCCGAGGATTAAAAGTGGNATCGAGAGCTCTAGAGAANCTCTGCAG
CGAGGAATCNGTCCTATCCGGATAGATGCTTTCGCGATCGGGAAAACTGATGCGGGCCAG
TAGGATGAACAACAACACTAACTGGTGGCTATTGGTACCTATTATACTATTCTGGCTTNT
GGTTGTGCGAAACTCCCTTGACCCTATTCTTATGGGNAAGAGAACTTTATATGCTGGGAA
TCGGACTACTATGTGCATNNCTTATTTGGACAGGACTTATATGGACAATTTCCCTAAAGT
TACGGACTANTTCTTCCCGCACACGGGTTGGCCTTAATAAGGAGTTCCCCAAAATTCCGC
CCATTGTAAACGGCGACCAAGGGTTGTCCCACTATATTACCCCCTTGGGTTAAACGGGAC
ANACAACATCTNTCCACAATTCNCAACACGTTAGTTTCTCCCCAAAAACCTTTCACCCTN
TTAAATTGTAANTANAANACTTATTTCCCCCCTNTGGTAGAAAAAAAAAAACCCCCCCCC
CCGTATAAAAATNNTTTGGTTACAAAAAAGAGGGGAAGAACCCCAACATTTAAAANTTNT
CCCCACAAACCAACCTCTCTCCANTCNCGTAGCGTCACACCTATTAAGCNTCGATGTACT
CACCCCCCCCCNTCTCTTACATCAATAATCATCAATACNNCACAAACTATGCTTTCCCCA
CACACNTCTGNCTANCCACACACACAACACACCCCCCATATGTNGTCACATCTANNTCTA
CATACATTAATACCCCCCTCTACCA

consensusID : consensus_2096#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 678
fasta sequence

                              [AAGAGAGTAAGGAATTGACAAAAAAAAGTGGAATTCGAGAGCTCTAGAGAACTTCTGCAGCGAGGAATCAGTCATATCGGATAGATGCTTTCGCGATCGTCAAAACTGATGCGGGCGAGTAGATGAAAGCAACACTAATTGTTTGTTTATGGTACCTTTTCTTTCTGGATTTTGGTTGTGCGACACTCCCTTGACCCTTTCTTATGGGAAGAGAACTTTATATGCTGGGAATAGGACTCTATGGCATTCTTTTTGGACAAACTTATTGGAAATTCCTGGTAGATTTCTCCGCAAGGGTGCTATAGAATCCAACACCCATGACGCACAGTTCATTTCCTGTAAGAAAGATTCAATCAAATGTCCCACTCCTATGAGAATTCCCGAAAACCCTGTATGTAAGGACATATCAAATTTTGTATGTGTCTTTTTTCTCATTTCATGAAAAGCCTGTTTTATACTAATATTCTGCCTTTTCATTGGCCTTTTTCTTTGATACTTTTGCACAGGCCCTGTTACTGGTCGTCCTGATGCCATGTTGTGGTACATTTATTTTTTTAGATAAACAATGTTTCGATACTATTTTACCGTCTTTAGCAAACCAAGAAAGTGTTCTAACACAGGGTTATTGCATACTACAAATAGCAAAGGCATATTTCACTATCATACTTATGTACTACC]

[+] EMBL BX609077             [AAGAGAGTAAGGAATTGACAAAAAAAAGTGGAATTCGAGAGCTCTAGAGAACTTCTGCAGCGAGGAATCAGTCATATCGGATAGATGCTTTCGCGATCGTCAAAACTGATGCGGGCGAGTAGATGAAAGCAACACTAATTGTTTGTTTATGGTACCTTTTCTTTCTGGATTTTGGTTGTGCGACACTCCCTTGACCCTTTCTTATGGGAAGAGAACTTTATATGCTGGGAATAGGACTCTATGGCATTCTTTTTGGACAAACTTATTGGAAATTCCTGGTAGATTTCTCCGCAAGGGTGCTATAGAATCCAACACCCATGACGCACAGTTCATTTCCTGTAAGAAAGATTCAATCAAATGTCCCACTCCTATGAGAATTCCCGAAAACCCTGTATGTAAGGACATATCAAATTTTGTATGTGTCTTTTTTCTCATTTCATGAAAAGCCTGTTTTATACTAATATTCTGCCTTTTCATTGGCCTTTTTCTTTGATACTTTTGCACAGGCCCTGTTACTGGTCGTCCTGATGCCATGTTGTGGTACATTTATTTTTTTAGATAAACAATGTTTCGATACTATTTTACCGTCTTTAGCAAACCAAGAAAGTGTTCTAACACAGGGTTATTGCATACTACAAATAGCAAAGGCATATTTCACTATCATACTTATGTACTACC]




>consensus_2096#1
AAGAGAGTAAGGAATTGACAAAAAAAAGTGGAATTCGAGAGCTCTAGAGAACTTCTGCAG
CGAGGAATCAGTCATATCGGATAGATGCTTTCGCGATCGTCAAAACTGATGCGGGCGAGT
AGATGAAAGCAACACTAATTGTTTGTTTATGGTACCTTTTCTTTCTGGATTTTGGTTGTG
CGACACTCCCTTGACCCTTTCTTATGGGAAGAGAACTTTATATGCTGGGAATAGGACTCT
ATGGCATTCTTTTTGGACAAACTTATTGGAAATTCCTGGTAGATTTCTCCGCAAGGGTGC
TATAGAATCCAACACCCATGACGCACAGTTCATTTCCTGTAAGAAAGATTCAATCAAATG
TCCCACTCCTATGAGAATTCCCGAAAACCCTGTATGTAAGGACATATCAAATTTTGTATG
TGTCTTTTTTCTCATTTCATGAAAAGCCTGTTTTATACTAATATTCTGCCTTTTCATTGG
CCTTTTTCTTTGATACTTTTGCACAGGCCCTGTTACTGGTCGTCCTGATGCCATGTTGTG
GTACATTTATTTTTTTAGATAAACAATGTTTCGATACTATTTTACCGTCTTTAGCAAACC
AAGAAAGTGTTCTAACACAGGGTTATTGCATACTACAAATAGCAAAGGCATATTTCACTA
TCATACTTATGTACTACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2096#0      TCACGCACGAACTCGCCGAGGATTAAAAGTGGNAT-CGAGAGCTCTAGAGAANCTCTGCA 59
consensus_2096#1      -AAGAGAGTAAGGAATTGACAAAAAAAAGTGGAATTCGAGAGCTCTAGAGAACTTCTGCA 59
                        *   *  **      **  *  ******** ** ****************  ******

consensus_2096#0      GCGAGGAATCNGTCCTATCCGGATAGATGCTTTCGCGATCGGGAAAACTGATGCGGGCCA 119
consensus_2096#1      GCGAGGAATCAGTCATATC-GGATAGATGCTTTCGCGATCGTCAAAACTGATGCGGGCGA 118
                      ********** *** **** *********************  *************** *

consensus_2096#0      GTAGGATGAACAACAACACTAACTGGTGGCTATTGGTACCTATTATACTATTCTGGCTTN 179
consensus_2096#1      GTAG-ATGAA-AGCAACACTAATTGTTTGTTTATGGTACCTTTTCT----TTCTGGATTT 172
                      **** ***** * ********* ** * * *  ******** ** *    ****** ** 

consensus_2096#0      TGGTTGTGCGAAACTCCCTTGACCCTATTCTTATGGGNAAGAGAACTTTATATGCTGGGA 239
consensus_2096#1      TGGTTGTGCGACACTCCCTTGACCCT-TTCTTATGGGAA-GAGAACTTTATATGCTGGGA 230
                      *********** ************** ********** * ********************

consensus_2096#0      ATCGGACTACTATGTGCATNNCTTATTTGGACAGGACTTATATGGACAATTTCCCTAAAG 299
consensus_2096#1      ATAGGACT-CTATG-GCATTCTTT--TTGGACAA-ACTTAT-TGGAAA---TTCCTGG-- 279
                      ** ***** ***** ****   **  *******  ****** **** *   * ***    

consensus_2096#0      TTACGGACTANTTCTTCCCGCACACGGGTTGGCCTTAATAAGGAGTTCCCCAAAATTCCG 359
consensus_2096#1      --------TAGATTTCTCCGCA---AGGGTGCTATAGAATCCAACACCCATGACGCACAG 328
                              **  * *  *****    ** **   *  *     *   **   *    * *

consensus_2096#0      CCCATTGTAAACGGCGACCAAGGGTTGTCCCACTATATTACCCCCTTGGGTTAAACGGGA 419
consensus_2096#1      TTCATTTC---CTGTAAGAAAGATTCAATCAAATGTCCCACTCCTATGAGAATTCCCGAA 385
                        ****     * *  *  ***  *    * * * *   ** **  ** *     * * *

consensus_2096#0      CANACAACATCTNTCCACAATTCNCAACACGTTAGTTTCTCCCCAAAAACCTTTCACCCT 479
consensus_2096#1      AACCCTGTATGTAAGGACATATCAAATTTTGTATGTGTCTTTTT-------TCTCATTTC 438
                       *  *   ** *    ***  **  *    **  ** ***           * ***    

consensus_2096#0      NTTAAATTGTAANTANAANACTTATTTCCCCCCTNTGGTAGAAAAAAAAAAACCCCCCCC 539
consensus_2096#1      ATGAAAA-GCCTGTTTTATACTAATATTCTGCCTTT--TCATTGGCCTTTTTCTTTGATA 495
                       * ***  *    *   * *** ** * *  *** *  *             *       

consensus_2096#0      CCCGTATAAAAATNNT-TTGGTTACAAAAAAGAGGGGAAGAACCCCAACATTTAAAANTT 598
consensus_2096#1      CTTTTGCACAGGCCCTGTTACTGGTCGTCCTGATGCCATGTTGTGGTACATTTA---TTT 552
                      *   *  * *     * **  *         ** *  * *       *******    **

consensus_2096#0      NTCCCCACAAACCAACCTCTCTCCANTCNCGTAGCGTCACACCTATTAAGCNTCGATGTA 658
consensus_2096#1      TTTTAGATAAAC-AATGTTTCGATACTATTTTACCGTC---TTTAGCAAACCAAGAAA-G 607
                       *    * **** **  * **   * *    ** ****     **  ** *   **    

consensus_2096#0      CTCACCCCCCCCCNTCTCTTACATCAATAATCATCAATACNNCACAAACTATGCTTTCCC 718
consensus_2096#1      TGTTCTAACACAGGGTTATTGCAT-----ACTACAAATAGCA---AAGGCATATTTCACT 659
                          *   * *     * ** ***     *  *  ****      **   **  **  * 

consensus_2096#0      CACACACNTCTGNCTANCCACACACACAACACACCCCCCATATGTNGTCACATCTANNTC 778
consensus_2096#1      ATCATACTTATGTACTACC----------------------------------------- 678
                        ** ** * **     **                                         

consensus_2096#0      TACATACATTAATACCCCCCTCTACCA 805
consensus_2096#1      ---------------------------