cluster # 210

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 210 cluster # 210 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_210#0 length = 692 sequences # 1

consensus_210#1 length = 430 sequences # 1

consensusID : consensus_210#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 692
fasta sequence

                              [GCGGTACGAGGCGCCCCGGAAGCATTAAATCTAAGTCTGTGCGGATAGGATGTTGGAAGTAGAAAGAGTGCGATGCGTGCGTAACAATATCAATCAATTTAGATAGGCACTCGTTTTGGTGAAAAAAAAAGAAAAACCGACCGGTTTCAGTAGCATAAAGTAGCTTTCAGTCGCATTTTCGCTTCCTTCTCGTTAGTAGTACCCAAGTGCAGGGTAGAAAATAAAAATCCTACGAATTTTAAACCCCATACTAGACAGGTATGAAGAAGANAAAGAGTGCCTTTTACAATAGCGGTTTCAAGGATCAGAAATCCTGGGGTCTTTAACGGANTTTNTCTCTCTTATACAATAATTTCATGCCTTTTNCCCTTGTTACCGNGCGCTTGAAGGGAANANCGGGTTGGGGNCACGCACCCACTTNAACATTGNACACTACACGACACTTTNTTTACAACACCACAACAAAACCGNACACAGGGACACAAAGATTTAACCACCTCACCAGGCTATGTACCNCACCCACAATACACCCAAACNGATTCCCGACTCCCAAAATTTTTCTATNACCCAAACACATTAATACTCTTCCTATTATATCTACATCCACTACACTCCATACACACTTACTATTAAACCACCACTNTTAACACACACACCCCACTCTCTCATANTNCCCCACNAAACANCCTTNC]

[+] EMBL AL696097             [GCGGTACGAGGCGCCCCGGAAGCATTAAATCTAAGTCTGTGCGGATAGGATGTTGGAAGTAGAAAGAGTGCGATGCGTGCGTAACAATATCAATCAATTTAGATAGGCACTCGTTTTGGTGAAAAAAAAAGAAAAACCGACCGGTTTCAGTAGCATAAAGTAGCTTTCAGTCGCATTTTCGCTTCCTTCTCGTTAGTAGTACCCAAGTGCAGGGTAGAAAATAAAAATCCTACGAATTTTAAACCCCATACTAGACAGGTATGAAGAAGANAAAGAGTGCCTTTTACAATAGCGGTTTCAAGGATCAGAAATCCTGGGGTCTTTAACGGANTTTNTCTCTCTTATACAATAATTTCATGCCTTTTNCCCTTGTTACCGNGCGCTTGAAGGGAANANCGGGTTGGGGNCACGCACCCACTTNAACATTGNACACTACACGACACTTTNTTTACAACACCACAACAAAACCGNACACAGGGACACAAAGATTTAACCACCTCACCAGGCTATGTACCNCACCCACAATACACCCAAACNGATTCCCGACTCCCAAAATTTTTCTATNACCCAAACACATTAATACTCTTCCTATTATATCTACATCCACTACACTCCATACACACTTACTATTAAACCACCACTNTTAACACACACACCCCACTCTCTCATANTNCCCCACNAAACANCCTTNC]




>consensus_210#0
GCGGTACGAGGCGCCCCGGAAGCATTAAATCTAAGTCTGTGCGGATAGGATGTTGGAAGT
AGAAAGAGTGCGATGCGTGCGTAACAATATCAATCAATTTAGATAGGCACTCGTTTTGGT
GAAAAAAAAAGAAAAACCGACCGGTTTCAGTAGCATAAAGTAGCTTTCAGTCGCATTTTC
GCTTCCTTCTCGTTAGTAGTACCCAAGTGCAGGGTAGAAAATAAAAATCCTACGAATTTT
AAACCCCATACTAGACAGGTATGAAGAAGANAAAGAGTGCCTTTTACAATAGCGGTTTCA
AGGATCAGAAATCCTGGGGTCTTTAACGGANTTTNTCTCTCTTATACAATAATTTCATGC
CTTTTNCCCTTGTTACCGNGCGCTTGAAGGGAANANCGGGTTGGGGNCACGCACCCACTT
NAACATTGNACACTACACGACACTTTNTTTACAACACCACAACAAAACCGNACACAGGGA
CACAAAGATTTAACCACCTCACCAGGCTATGTACCNCACCCACAATACACCCAAACNGAT
TCCCGACTCCCAAAATTTTTCTATNACCCAAACACATTAATACTCTTCCTATTATATCTA
CATCCACTACACTCCATACACACTTACTATTAAACCACCACTNTTAACACACACACCCCA
CTCTCTCATANTNCCCCACNAAACANCCTTNC

consensusID : consensus_210#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 430
fasta sequence

                              [TCGAAGGCAAGAATTCGCGCACGAGTGTAGCTGTAACCCGAGGCCGAACACAACGGCACCGCACCCACCACAACCTGCCACCGAGGAGGACAACTCAGCGTCAACGGAGGAGAGTCGGGCTCGAACGAAGGCTCCAACGCATCGCCAGACTCTACCGAGGCTCCGTCGGCCGAATCGGGCGCGGAATCGAACGAGGCTAGCACCGGTCCACCCGCTAAGCACCCGGATCGGGCGAGATTTGTGTGTCCGGCTGCCGGTCGCGTTCGCCAATCCGACCGACTGTCACAAATTACTACGTCTGCGTTCTGGCGTGCCCGTTCGGACTGTACAGTCTCGGAGCAGAACATGCTATGGCCCGGGTACNGCGGTAACAAATCCGGTTCGCTTGGNAAACGGCTAGNGCACAGGGGCGACCAAGAGCGGTNTTTAG]

[+] EMBL BX468010             [TCGAAGGCAAGAATTCGCGCACGAGTGTAGCTGTAACCCGAGGCCGAACACAACGGCACCGCACCCACCACAACCTGCCACCGAGGAGGACAACTCAGCGTCAACGGAGGAGAGTCGGGCTCGAACGAAGGCTCCAACGCATCGCCAGACTCTACCGAGGCTCCGTCGGCCGAATCGGGCGCGGAATCGAACGAGGCTAGCACCGGTCCACCCGCTAAGCACCCGGATCGGGCGAGATTTGTGTGTCCGGCTGCCGGTCGCGTTCGCCAATCCGACCGACTGTCACAAATTACTACGTCTGCGTTCTGGCGTGCCCGTTCGGACTGTACAGTCTCGGAGCAGAACATGCTATGGCCCGGGTACNGCGGTAACAAATCCGGTTCGCTTGGNAAACGGCTAGNGCACAGGGGCGACCAAGAGCGGTNTTTAG]




>consensus_210#1
TCGAAGGCAAGAATTCGCGCACGAGTGTAGCTGTAACCCGAGGCCGAACACAACGGCACC
GCACCCACCACAACCTGCCACCGAGGAGGACAACTCAGCGTCAACGGAGGAGAGTCGGGC
TCGAACGAAGGCTCCAACGCATCGCCAGACTCTACCGAGGCTCCGTCGGCCGAATCGGGC
GCGGAATCGAACGAGGCTAGCACCGGTCCACCCGCTAAGCACCCGGATCGGGCGAGATTT
GTGTGTCCGGCTGCCGGTCGCGTTCGCCAATCCGACCGACTGTCACAAATTACTACGTCT
GCGTTCTGGCGTGCCCGTTCGGACTGTACAGTCTCGGAGCAGAACATGCTATGGCCCGGG
TACNGCGGTAACAAATCCGGTTCGCTTGGNAAACGGCTAGNGCACAGGGGCGACCAAGAG
CGGTNTTTAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_210#0      GCGGTACGAGGCGCCCCGGAAGCATTAAATCTAAGTCTGTGCGGATAGGATGTTGGAAGT 60
consensus_210#1      ---------------TCGAAGGCAAGAATTCG-----CGCACGAGTGTAGCTGTAACCCG 40
                                     ** * ***  ** **       *  **  *       *      

consensus_210#0      AGAAAGAGTGCGATGCGTGCGTAACAATATCAATCAATTTAGATAGGCACTCGTTTTGGT 120
consensus_210#1      AGGCCGAACACAACGGCACCGCACCCACCACAACCTGCC-ACCGAGGAGGACAACTCAGC 99
                     **   **   * * *    ** * * *   *** *     *   ***    *   *  * 

consensus_210#0      GAAAAAAAAAGAAAAACCGACCGGTTTCAGTAGCATAAAGTAGCTTTCAGTCGCATTTTC 180
consensus_210#1      GTCAACGGAGGAGAGTCGGGCTCGAACGAAGGCTCCAACGCATCGCCAGACTCTACCGAG 159
                     *  **   * ** *  * * *  *    *       ** * * *          *     

consensus_210#0      GCTTCCTTCTCGTTAGTAGTACCCAAGTGCAGGGTAGAAAATAAAAATCCTACGAATTTT 240
consensus_210#1      GCTCC------GTCGGCCGAATC-GGGCGCGGAATCGAA--CGAGGCTAGCACCGGT--- 207
                     *** *      **  *  * * *   * ** *  * ***    *   *   **   *   

consensus_210#0      AAACCCCATACTAGACAGGTATGAAGAAGANAAAGAGTGCCTTTTACAATAGCGGTTTCA 300
consensus_210#1      ---CCACCCGCTAAGCA--CCCGGATCGGGCGAGATTTGTGTGTCCGGCTGCCGGTCGC- 261
                        ** *   ***  **     * *   *   *    **  * *     *  ****  * 

consensus_210#0      AGGATCAGAAATCCTGGGGTCTTTAACGGANTTTNTCTCTCTTATACAATAATTTCATGC 360
consensus_210#1      --GTTCGCCAATCCGACCGACTGTCACAAATTACTACGTCTGCGTTC-----TGGCGTGC 314
                       * **   *****    * ** * **  * *    *       * *     *  * ***

consensus_210#0      CTTTTNCCCTTGTTACCGNGCGCTTGAAGGGAANANCGGGTTGGGGNCACGCACCCACTT 420
consensus_210#1      CCGTTCGG------ACTGTACAGTCTCGGAGCAGAACATGCTATGGCCCGGGTACNGCGG 368
                     *  **         ** *  *  *    * * * * *  * *  ** *  *   *  *  

consensus_210#0      NAACATTGNACACTACACGACACTTTNTTTACAACACCACAACAAAACCGNACACAGGGA 480
consensus_210#1      TAACAA--------ATCCGGTTCGCTTGGNAAACGGCTAGNGCACAGGGGCGACCAAGAG 420
                      ****         *  **   *  *    * *   * *   ** *   *    ** *  

consensus_210#0      CACAAAGATTTAACCACCTCACCAGGCTATGTACCNCACCCACAATACACCCAAACNGAT 540
consensus_210#1      CG---GTNTTTAG----------------------------------------------- 430
                     *       ****                                                

consensus_210#0      TCCCGACTCCCAAAATTTTTCTATNACCCAAACACATTAATACTCTTCCTATTATATCTA 600
consensus_210#1      ------------------------------------------------------------
                                                                                 

consensus_210#0      CATCCACTACACTCCATACACACTTACTATTAAACCACCACTNTTAACACACACACCCCA 660
consensus_210#1      ------------------------------------------------------------
                                                                                 

consensus_210#0      CTCTCTCATANTNCCCCACNAAACANCCTTNC 692
consensus_210#1      --------------------------------