cluster # 2100

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 2100 cluster # 2100 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2100#0 length = 486 sequences # 1

consensus_2100#1 length = 307 sequences # 1

consensusID : consensus_2100#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 486
fasta sequence

                              [GTGTGTGTGTTGGAGAAACAATCGTTTTGCTACAGACGGAGTTTTTTTGCGAAACGTTGAATCCGATGGTAGTACAATCAAACAAACACAGAGAGAAAGAGAGACAGCTAGGGGCGAAAGCAAGTGGTGTCACACGTTTACTTAATCGAACTGCAGCGAATGCGGGTTTTTGTCTTATGAAAAATGGCACATTCTCTTTCTGTGGAGAGCAGTATTGCAAAGTCGATGTGTATGTGTGTGCGTGTGTGTGTGTGTGTCATTACTTTCGTTGAAATGCGATTGATTGCGTCCGGTTTGGTGAGGGTGCGTGATGAAAATCAAAAGAGAGCGGAAGACACAGGGCGAACAAAAACTCAAGTGCAATCACCATCGCTCCCACAAACCCACACAGCCACAAACACACACACACACTCAATTACATATATTCCACCACCTCACTGTGCATGGGGTGGAGCCGCCCGGTCGTGCCATGTTGTGTTGTGTGAG]

[+] EMBL CNS09ONN             [GTGTGTGTGTTGGAGAAACAATCGTTTTGCTACAGACGGAGTTTTTTTGCGAAACGTTGAATCCGATGGTAGTACAATCAAACAAACACAGAGAGAAAGAGAGACAGCTAGGGGCGAAAGCAAGTGGTGTCACACGTTTACTTAATCGAACTGCAGCGAATGCGGGTTTTTGTCTTATGAAAAATGGCACATTCTCTTTCTGTGGAGAGCAGTATTGCAAAGTCGATGTGTATGTGTGTGCGTGTGTGTGTGTGTGTCATTACTTTCGTTGAAATGCGATTGATTGCGTCCGGTTTGGTGAGGGTGCGTGATGAAAATCAAAAGAGAGCGGAAGACACAGGGCGAACAAAAACTCAAGTGCAATCACCATCGCTCCCACAAACCCACACAGCCACAAACACACACACACACTCAATTACATATATTCCACCACCTCACTGTGCATGGGGTGGAGCCGCCCGGTCGTGCCATGTTGTGTTGTGTGAG]




>consensus_2100#0
GTGTGTGTGTTGGAGAAACAATCGTTTTGCTACAGACGGAGTTTTTTTGCGAAACGTTGA
ATCCGATGGTAGTACAATCAAACAAACACAGAGAGAAAGAGAGACAGCTAGGGGCGAAAG
CAAGTGGTGTCACACGTTTACTTAATCGAACTGCAGCGAATGCGGGTTTTTGTCTTATGA
AAAATGGCACATTCTCTTTCTGTGGAGAGCAGTATTGCAAAGTCGATGTGTATGTGTGTG
CGTGTGTGTGTGTGTGTCATTACTTTCGTTGAAATGCGATTGATTGCGTCCGGTTTGGTG
AGGGTGCGTGATGAAAATCAAAAGAGAGCGGAAGACACAGGGCGAACAAAAACTCAAGTG
CAATCACCATCGCTCCCACAAACCCACACAGCCACAAACACACACACACACTCAATTACA
TATATTCCACCACCTCACTGTGCATGGGGTGGAGCCGCCCGGTCGTGCCATGTTGTGTTG
TGTGAG

consensusID : consensus_2100#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 307
fasta sequence

                              [GAGGTNTTAACACACACNCAGNAANCGAGCAGACACGCTAGGGGCGAACAGAAGCTGGCTGTCCGCCACGTATTACTCTAATCAAACTGCAGCGAATGCGGGTTTTTGTCTCATGAAAAACTGGCACATTCTCTTTCTGTGGAGAGCAGTATTGCAAAATCCATGTGTATGCTGTGTGCGTAGTGCTGTGTGTAGTAATTACTNTTCGATGAACATGCGACTTGACTTGCGTCCGGTNTCGGGTGAGGGTGCGCTGATGANAAATCAACATAGAGAACGGAGGACACAGGGCGAACAANAAACACAA]

[+] EMBL AL695759             [GAGGTNTTAACACACACNCAGNAANCGAGCAGACACGCTAGGGGCGAACAGAAGCTGGCTGTCCGCCACGTATTACTCTAATCAAACTGCAGCGAATGCGGGTTTTTGTCTCATGAAAAACTGGCACATTCTCTTTCTGTGGAGAGCAGTATTGCAAAATCCATGTGTATGCTGTGTGCGTAGTGCTGTGTGTAGTAATTACTNTTCGATGAACATGCGACTTGACTTGCGTCCGGTNTCGGGTGAGGGTGCGCTGATGANAAATCAACATAGAGAACGGAGGACACAGGGCGAACAANAAACACAA]




>consensus_2100#1
GAGGTNTTAACACACACNCAGNAANCGAGCAGACACGCTAGGGGCGAACAGAAGCTGGCT
GTCCGCCACGTATTACTCTAATCAAACTGCAGCGAATGCGGGTTTTTGTCTCATGAAAAA
CTGGCACATTCTCTTTCTGTGGAGAGCAGTATTGCAAAATCCATGTGTATGCTGTGTGCG
TAGTGCTGTGTGTAGTAATTACTNTTCGATGAACATGCGACTTGACTTGCGTCCGGTNTC
GGGTGAGGGTGCGCTGATGANAAATCAACATAGAGAACGGAGGACACAGGGCGAACAANA
AACACAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2100#0      GTGTGTGTGTTGGAGAAACAATCGTTTTGCTACAGACGGAGTTTTTTTGCGAAACGTTGA 60
consensus_2100#1      ------------------------------------------------------------
                                                                                  

consensus_2100#0      ATCCGATGGTAGTACAATCAAACAAACACAGAGAGAAAGAG-AGACA-GCTAGGGGCGAA 118
consensus_2100#1      ------------GAGGTNTTAACACACACNCAGNAANCGAGCAGACACGCTAGGGGCGAA 48
                                   *      **** ****  **  *  *** ***** ************

consensus_2100#0      AGCAAGTGG------TGTCACACGTTTACTTAATCGAACTGCAGCGAATGCGGGTTTTTG 172
consensus_2100#1      CAGAAGCTGGCTGTCCGCCACGTATTACTCTAATCAAACTGCAGCGAATGCGGGTTTTTG 108
                         ***  *       * ***   **    ***** ************************

consensus_2100#0      TCTTATGAAAAA-TGGCACATTCTCTTTCTGTGGAGAGCAGTATTGCAAAGTCGATGTGT 231
consensus_2100#1      TCTCATGAAAAACTGGCACATTCTCTTTCTGTGGAGAGCAGTATTGCAAAATCCATGTGT 168
                      *** ******** ************************************* ** ******

consensus_2100#0      ATG-TGTGTGCGTGTGTGTGTGTGT-GTCATTACTTT-CGTTGAA-ATGCGA-TTGA-TT 285
consensus_2100#1      ATGCTGTGTGCGTAGTGCTGTGTGTAGTAATTACTNTTCGATGAACATGCGACTTGACTT 228
                      *** *********     ******* ** ****** * ** **** ****** **** **

consensus_2100#0      GCGTCCGGTTT--GGTGAGGGTGCG-TGATGAAAATCAAA---AGAGAGCGGAAGACACA 339
consensus_2100#1      GCGTCCGGTNTCGGGTGAGGGTGCGCTGATGANAAATCAACATAGAGAACGGAGGACACA 288
                      ********* *  ************ ****** **   **   ***** **** ******

consensus_2100#0      GGGCGAACAAAAA-CTCAAGTGCAATCACCATCGCTCCCACAAACCCACACAGCCACAAA 398
consensus_2100#1      GGGCGAACAANAAACACAA----------------------------------------- 307
                      ********** ** * ***                                         

consensus_2100#0      CACACACACACACTCAATTACATATATTCCACCACCTCACTGTGCATGGGGTGGAGCCGC 458
consensus_2100#1      ------------------------------------------------------------
                                                                                  

consensus_2100#0      CCGGTCGTGCCATGTTGTGTTGTGTGAG 486
consensus_2100#1      ----------------------------