cluster # 2125

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Anopheles gambiae
cluster # 2125 cluster # 2125 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2125#0 length = 801 sequences # 1

consensus_2125#1 length = 634 sequences # 1

consensusID : consensus_2125#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 801
fasta sequence

                              [ANTTTACCGACCATGTTCAAGTTGTTAGTGCTGTGCGCGTTCGTTGCCGGTGGTGCGATGGCCATCGGCACCGTTTCGGAGACGCGTCTCAACGCCCGTATCAGCGGTGGTGAGCTGACCGATCCACGGGCCGTTCCGTTCATCGTCGGCATACTCATATCCGGCTCGTCTTCCCATTCGTTCTGTGCTGGTATTTTGATTTCTCCCCGTCACGTTCTCACCACCGCAAGCTGTGTGTCCAACCGACCGACGCTGACCGTACTACTCGGTGCATCGGATATGACCCGCATCCAGCAGTTCATCGGTGTCGCGAACATACTAATCCATCCCAACTACAGCTCCCTGTTCAACCGGGACGATCTGGCCATTCTGACGATGGATCGTGACACACCGCTGAACGAGTACATCCAGGTAGCGAACCTTCCCCGCTGGTCCCACATGGGCAACACGTTCAACGGCTTCGGCACGACGATCAGCGGCTGGGGCAATACGGGCAACCGGGACAATGAGCCAATCCCGACGCCAAACCTGCAGTCCATCCGGACGCCCGTCATCAGCAACACGGTGTGCGGCATTTCGCACAACTTTATCCGGGATGATCATATCTGTACCTCGGGCGACATCGGAGGTCCTTGCAATGGTGATGACGGAGGCCCGGTTACGATAACGGAGGCAGGCCAACCGATCGTTATCGGTATGCATTCGTTCCACTACAGCGGACTGTTCGGGTGCGATCGTGGNCGGTCCGCCGTTCATGTGCGTCTCAGCAGCTATCTGAGCTGGATTGAAGCCAACTCGGAC]

[+] EMBL BX625155             [ANTTTACCGACCATGTTCAAGTTGTTAGTGCTGTGCGCGTTCGTTGCCGGTGGTGCGATGGCCATCGGCACCGTTTCGGAGACGCGTCTCAACGCCCGTATCAGCGGTGGTGAGCTGACCGATCCACGGGCCGTTCCGTTCATCGTCGGCATACTCATATCCGGCTCGTCTTCCCATTCGTTCTGTGCTGGTATTTTGATTTCTCCCCGTCACGTTCTCACCACCGCAAGCTGTGTGTCCAACCGACCGACGCTGACCGTACTACTCGGTGCATCGGATATGACCCGCATCCAGCAGTTCATCGGTGTCGCGAACATACTAATCCATCCCAACTACAGCTCCCTGTTCAACCGGGACGATCTGGCCATTCTGACGATGGATCGTGACACACCGCTGAACGAGTACATCCAGGTAGCGAACCTTCCCCGCTGGTCCCACATGGGCAACACGTTCAACGGCTTCGGCACGACGATCAGCGGCTGGGGCAATACGGGCAACCGGGACAATGAGCCAATCCCGACGCCAAACCTGCAGTCCATCCGGACGCCCGTCATCAGCAACACGGTGTGCGGCATTTCGCACAACTTTATCCGGGATGATCATATCTGTACCTCGGGCGACATCGGAGGTCCTTGCAATGGTGATGACGGAGGCCCGGTTACGATAACGGAGGCAGGCCAACCGATCGTTATCGGTATGCATTCGTTCCACTACAGCGGACTGTTCGGGTGCGATCGTGGNCGGTCCGCCGTTCATGTGCGTCTCAGCAGCTATCTGAGCTGGATTGAAGCCAACTCGGAC]




>consensus_2125#0
ANTTTACCGACCATGTTCAAGTTGTTAGTGCTGTGCGCGTTCGTTGCCGGTGGTGCGATG
GCCATCGGCACCGTTTCGGAGACGCGTCTCAACGCCCGTATCAGCGGTGGTGAGCTGACC
GATCCACGGGCCGTTCCGTTCATCGTCGGCATACTCATATCCGGCTCGTCTTCCCATTCG
TTCTGTGCTGGTATTTTGATTTCTCCCCGTCACGTTCTCACCACCGCAAGCTGTGTGTCC
AACCGACCGACGCTGACCGTACTACTCGGTGCATCGGATATGACCCGCATCCAGCAGTTC
ATCGGTGTCGCGAACATACTAATCCATCCCAACTACAGCTCCCTGTTCAACCGGGACGAT
CTGGCCATTCTGACGATGGATCGTGACACACCGCTGAACGAGTACATCCAGGTAGCGAAC
CTTCCCCGCTGGTCCCACATGGGCAACACGTTCAACGGCTTCGGCACGACGATCAGCGGC
TGGGGCAATACGGGCAACCGGGACAATGAGCCAATCCCGACGCCAAACCTGCAGTCCATC
CGGACGCCCGTCATCAGCAACACGGTGTGCGGCATTTCGCACAACTTTATCCGGGATGAT
CATATCTGTACCTCGGGCGACATCGGAGGTCCTTGCAATGGTGATGACGGAGGCCCGGTT
ACGATAACGGAGGCAGGCCAACCGATCGTTATCGGTATGCATTCGTTCCACTACAGCGGA
CTGTTCGGGTGCGATCGTGGNCGGTCCGCCGTTCATGTGCGTCTCAGCAGCTATCTGAGC
TGGATTGAAGCCAACTCGGAC

consensusID : consensus_2125#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 634
fasta sequence

                              [AGGCAGAATCGGCACGATGGAGTTGTTAGTGCTGTGCGCGTTCGTTGCCGGTGGTGCGATGGCCATCGGCACCGTTTCGGAGACGCGTCTCAACGCCCGTATCAGCGGTGGTGAGCTGACCGATCCACGGGCCGTTCCGTTCATCGTCGGCATACTCATATCCGGCTCGTCTTCCCATTCGTTCTGTGCTGGTATTTTGATTTCTCCCCGTCACGTTCTCACCACCGCAAGCTGTGTGTCCAACCGACCGACGCTGACCGTACTACTCGGTGCATCGGATATGACCCGCATCCAGCAGTTCATCGGTGTCGCGAACATACTAATCCATCCCAACTACAGCTCCCTGTTCAACCGGGACGATCTGGCCATTCTGACGATGGATCGTGACACACCGCTGAACGAGTACATCCAGGTAGCGAACCTTCCCCGCTGGTCCCACATGGGCAACACGTTCAACGGCTTCGGCACGACGATCAGCGGCTGGGGCAATACGGGCAACCGGGACAATGAGCCAATCCCGACGCCNAACCTGCAGTCCATCCGGACGCCCGTCATCAGCAACACGGTGTGCGGCAATTTCCGCACAAGCTTTATCCCGGGATGATCATTATCCTGTACCTCGGGCGACAATCGG]

[+] EMBL BX469829             [AGGCAGAATCGGCACGATGGAGTTGTTAGTGCTGTGCGCGTTCGTTGCCGGTGGTGCGATGGCCATCGGCACCGTTTCGGAGACGCGTCTCAACGCCCGTATCAGCGGTGGTGAGCTGACCGATCCACGGGCCGTTCCGTTCATCGTCGGCATACTCATATCCGGCTCGTCTTCCCATTCGTTCTGTGCTGGTATTTTGATTTCTCCCCGTCACGTTCTCACCACCGCAAGCTGTGTGTCCAACCGACCGACGCTGACCGTACTACTCGGTGCATCGGATATGACCCGCATCCAGCAGTTCATCGGTGTCGCGAACATACTAATCCATCCCAACTACAGCTCCCTGTTCAACCGGGACGATCTGGCCATTCTGACGATGGATCGTGACACACCGCTGAACGAGTACATCCAGGTAGCGAACCTTCCCCGCTGGTCCCACATGGGCAACACGTTCAACGGCTTCGGCACGACGATCAGCGGCTGGGGCAATACGGGCAACCGGGACAATGAGCCAATCCCGACGCCNAACCTGCAGTCCATCCGGACGCCCGTCATCAGCAACACGGTGTGCGGCAATTTCCGCACAAGCTTTATCCCGGGATGATCATTATCCTGTACCTCGGGCGACAATCGG]




>consensus_2125#1
AGGCAGAATCGGCACGATGGAGTTGTTAGTGCTGTGCGCGTTCGTTGCCGGTGGTGCGAT
GGCCATCGGCACCGTTTCGGAGACGCGTCTCAACGCCCGTATCAGCGGTGGTGAGCTGAC
CGATCCACGGGCCGTTCCGTTCATCGTCGGCATACTCATATCCGGCTCGTCTTCCCATTC
GTTCTGTGCTGGTATTTTGATTTCTCCCCGTCACGTTCTCACCACCGCAAGCTGTGTGTC
CAACCGACCGACGCTGACCGTACTACTCGGTGCATCGGATATGACCCGCATCCAGCAGTT
CATCGGTGTCGCGAACATACTAATCCATCCCAACTACAGCTCCCTGTTCAACCGGGACGA
TCTGGCCATTCTGACGATGGATCGTGACACACCGCTGAACGAGTACATCCAGGTAGCGAA
CCTTCCCCGCTGGTCCCACATGGGCAACACGTTCAACGGCTTCGGCACGACGATCAGCGG
CTGGGGCAATACGGGCAACCGGGACAATGAGCCAATCCCGACGCCNAACCTGCAGTCCAT
CCGGACGCCCGTCATCAGCAACACGGTGTGCGGCAATTTCCGCACAAGCTTTATCCCGGG
ATGATCATTATCCTGTACCTCGGGCGACAATCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2125#0      -ANTTTACCGACCATGTTCAAGTTGTTAGTGCTGTGCGCGTTCGTTGCCGGTGGTGCGAT 59
consensus_2125#1      AGGCAGAATCGGCACGATGGAGTTGTTAGTGCTGTGCGCGTTCGTTGCCGGTGGTGCGAT 60
                            *     ** * *  ****************************************

consensus_2125#0      GGCCATCGGCACCGTTTCGGAGACGCGTCTCAACGCCCGTATCAGCGGTGGTGAGCTGAC 119
consensus_2125#1      GGCCATCGGCACCGTTTCGGAGACGCGTCTCAACGCCCGTATCAGCGGTGGTGAGCTGAC 120
                      ************************************************************

consensus_2125#0      CGATCCACGGGCCGTTCCGTTCATCGTCGGCATACTCATATCCGGCTCGTCTTCCCATTC 179
consensus_2125#1      CGATCCACGGGCCGTTCCGTTCATCGTCGGCATACTCATATCCGGCTCGTCTTCCCATTC 180
                      ************************************************************

consensus_2125#0      GTTCTGTGCTGGTATTTTGATTTCTCCCCGTCACGTTCTCACCACCGCAAGCTGTGTGTC 239
consensus_2125#1      GTTCTGTGCTGGTATTTTGATTTCTCCCCGTCACGTTCTCACCACCGCAAGCTGTGTGTC 240
                      ************************************************************

consensus_2125#0      CAACCGACCGACGCTGACCGTACTACTCGGTGCATCGGATATGACCCGCATCCAGCAGTT 299
consensus_2125#1      CAACCGACCGACGCTGACCGTACTACTCGGTGCATCGGATATGACCCGCATCCAGCAGTT 300
                      ************************************************************

consensus_2125#0      CATCGGTGTCGCGAACATACTAATCCATCCCAACTACAGCTCCCTGTTCAACCGGGACGA 359
consensus_2125#1      CATCGGTGTCGCGAACATACTAATCCATCCCAACTACAGCTCCCTGTTCAACCGGGACGA 360
                      ************************************************************

consensus_2125#0      TCTGGCCATTCTGACGATGGATCGTGACACACCGCTGAACGAGTACATCCAGGTAGCGAA 419
consensus_2125#1      TCTGGCCATTCTGACGATGGATCGTGACACACCGCTGAACGAGTACATCCAGGTAGCGAA 420
                      ************************************************************

consensus_2125#0      CCTTCCCCGCTGGTCCCACATGGGCAACACGTTCAACGGCTTCGGCACGACGATCAGCGG 479
consensus_2125#1      CCTTCCCCGCTGGTCCCACATGGGCAACACGTTCAACGGCTTCGGCACGACGATCAGCGG 480
                      ************************************************************

consensus_2125#0      CTGGGGCAATACGGGCAACCGGGACAATGAGCCAATCCCGACGCCAAACCTGCAGTCCAT 539
consensus_2125#1      CTGGGGCAATACGGGCAACCGGGACAATGAGCCAATCCCGACGCCNAACCTGCAGTCCAT 540
                      ********************************************* **************

consensus_2125#0      CCGGACGCCCGTCATCAGCAACACGGTGTGCGGCA--TTTCGCACAA-CTTTATCC-GGG 595
consensus_2125#1      CCGGACGCCCGTCATCAGCAACACGGTGTGCGGCAATTTCCGCACAAGCTTTATCCCGGG 600
                      ***********************************  ** ******* ******** ***

consensus_2125#0      ATGATCATA--TCTGTACCTCGGGCGACA-TCGGAGGTCCTTGCAATGGTGATGACGGAG 652
consensus_2125#1      ATGATCATTATCCTGTACCTCGGGCGACAATCGG-------------------------- 634
                      ********    ***************** ****                          

consensus_2125#0      GCCCGGTTACGATAACGGAGGCAGGCCAACCGATCGTTATCGGTATGCATTCGTTCCACT 712
consensus_2125#1      ------------------------------------------------------------
                                                                                  

consensus_2125#0      ACAGCGGACTGTTCGGGTGCGATCGTGGNCGGTCCGCCGTTCATGTGCGTCTCAGCAGCT 772
consensus_2125#1      ------------------------------------------------------------
                                                                                  

consensus_2125#0      ATCTGAGCTGGATTGAAGCCAACTCGGAC 801
consensus_2125#1      -----------------------------