cluster # 2131

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Anopheles gambiae
cluster # 2131 cluster # 2131 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2131#0 length = 663 sequences # 1

consensus_2131#1 length = 540 sequences # 1

consensusID : consensus_2131#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 663
fasta sequence

                              [CCAGAATCGGCACGAGGCGGCGGCAGGTGTATTTGGCGGGCTATTTTTCCTCGTTATCGAAAGTTTGTGTTTTAGTTTTGTGCAATAAAACCGGTGTAGCAGTCGGTGCAACAGTCAGGCAATGAGCATGACGATGAACGCAAATCCGAACCGGAAGCGTTTGCGGTCCAACGAAAGCGACGGATGCTTTGCGCTGCAGCGCAAAACGTTCGTCAACCAGCAGATGATGGACCAGCAGGATCCGAACAAAATGAAGCGCATCCTGGCCAAAACTATCAGCTTGCTGTTCCAGGGTGCAAAGAACCAGGACAAAGAGTTGGTCATCGATCAGAAGGCGTCGCTGAAAGCCGTCCGTTTGCTTGGAAGCGGTGAAATAGACTACGATATGAATGCTACCTCCTCCTGGCTGGGAAAGAAGGCTGACCGGAAATGTCGCCAGTGCGACCGGATGTCGATCGTGCACGCCGACTGCACCAACTGCAATCTGGAGCTGTGCGAGTACTGTGGCATTAATTGTAACACTTGTCCGGAAAAGATCTGCCTCAACTGTGTCACAATATTTCACTGCGTGTCGCATGATTTGCCCTGCTGTGAGCAGTGTACAAATGTTTCTATGAAATTCTAGGCCCTAGGAGTGGGCAGGATAAACCATCCGGCCTCGTT]

[+] EMBL BX469842             [CCAGAATCGGCACGAGGCGGCGGCAGGTGTATTTGGCGGGCTATTTTTCCTCGTTATCGAAAGTTTGTGTTTTAGTTTTGTGCAATAAAACCGGTGTAGCAGTCGGTGCAACAGTCAGGCAATGAGCATGACGATGAACGCAAATCCGAACCGGAAGCGTTTGCGGTCCAACGAAAGCGACGGATGCTTTGCGCTGCAGCGCAAAACGTTCGTCAACCAGCAGATGATGGACCAGCAGGATCCGAACAAAATGAAGCGCATCCTGGCCAAAACTATCAGCTTGCTGTTCCAGGGTGCAAAGAACCAGGACAAAGAGTTGGTCATCGATCAGAAGGCGTCGCTGAAAGCCGTCCGTTTGCTTGGAAGCGGTGAAATAGACTACGATATGAATGCTACCTCCTCCTGGCTGGGAAAGAAGGCTGACCGGAAATGTCGCCAGTGCGACCGGATGTCGATCGTGCACGCCGACTGCACCAACTGCAATCTGGAGCTGTGCGAGTACTGTGGCATTAATTGTAACACTTGTCCGGAAAAGATCTGCCTCAACTGTGTCACAATATTTCACTGCGTGTCGCATGATTTGCCCTGCTGTGAGCAGTGTACAAATGTTTCTATGAAATTCTAGGCCCTAGGAGTGGGCAGGATAAACCATCCGGCCTCGTT]




>consensus_2131#0
CCAGAATCGGCACGAGGCGGCGGCAGGTGTATTTGGCGGGCTATTTTTCCTCGTTATCGA
AAGTTTGTGTTTTAGTTTTGTGCAATAAAACCGGTGTAGCAGTCGGTGCAACAGTCAGGC
AATGAGCATGACGATGAACGCAAATCCGAACCGGAAGCGTTTGCGGTCCAACGAAAGCGA
CGGATGCTTTGCGCTGCAGCGCAAAACGTTCGTCAACCAGCAGATGATGGACCAGCAGGA
TCCGAACAAAATGAAGCGCATCCTGGCCAAAACTATCAGCTTGCTGTTCCAGGGTGCAAA
GAACCAGGACAAAGAGTTGGTCATCGATCAGAAGGCGTCGCTGAAAGCCGTCCGTTTGCT
TGGAAGCGGTGAAATAGACTACGATATGAATGCTACCTCCTCCTGGCTGGGAAAGAAGGC
TGACCGGAAATGTCGCCAGTGCGACCGGATGTCGATCGTGCACGCCGACTGCACCAACTG
CAATCTGGAGCTGTGCGAGTACTGTGGCATTAATTGTAACACTTGTCCGGAAAAGATCTG
CCTCAACTGTGTCACAATATTTCACTGCGTGTCGCATGATTTGCCCTGCTGTGAGCAGTG
TACAAATGTTTCTATGAAATTCTAGGCCCTAGGAGTGGGCAGGATAAACCATCCGGCCTC
GTT

consensusID : consensus_2131#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 540
fasta sequence

                              [CGCAAGCAACAACACGGCGGCAGGTGTATTTGGCGGGCTATTTTTCCTCGTTATCGAAAGTTTGTGTTTTAGTTTTGTGCAATAAAACCGGTGTAGCAGTCGGTGCAACAGTCAGGCAATGAGCATGACGATGAACGCAAATCCGAACCGGAAGCGTTTGCGGTCCAACGAAAGCGACGGATGCTTTGCGCTGCAGCGCAAAACGTTCGTCAACCAGCAGATGATGGACCAGCAGGATCCGAACAAAATGAAGCGCATCCTGGCCAAAACTATCAGCTTGCTGTTCCAGGGTGCAAAGAACCAGGACAAAGAGTTGGTCATCGATCAGAAGGCGTCGCTGAAAGCCGTCCGTTTGCTTGGAAGCGGTGAAATAGACTACGATATGAATGCTACCTCCTCCTGGCTGGGAAAGAAGGCTGACCGGAAATGTCGCCAGTGCGACCGGATGTCGATCGTGCACGCCGACTGCACCAACTGCAATCTGGAGCTGTGCGAGTACTGTGGCATTAATTGTAACACTTGTCCGGAAAAGATCTGCCT]

[+] EMBL BX628407             [CGCAAGCAACAACACGGCGGCAGGTGTATTTGGCGGGCTATTTTTCCTCGTTATCGAAAGTTTGTGTTTTAGTTTTGTGCAATAAAACCGGTGTAGCAGTCGGTGCAACAGTCAGGCAATGAGCATGACGATGAACGCAAATCCGAACCGGAAGCGTTTGCGGTCCAACGAAAGCGACGGATGCTTTGCGCTGCAGCGCAAAACGTTCGTCAACCAGCAGATGATGGACCAGCAGGATCCGAACAAAATGAAGCGCATCCTGGCCAAAACTATCAGCTTGCTGTTCCAGGGTGCAAAGAACCAGGACAAAGAGTTGGTCATCGATCAGAAGGCGTCGCTGAAAGCCGTCCGTTTGCTTGGAAGCGGTGAAATAGACTACGATATGAATGCTACCTCCTCCTGGCTGGGAAAGAAGGCTGACCGGAAATGTCGCCAGTGCGACCGGATGTCGATCGTGCACGCCGACTGCACCAACTGCAATCTGGAGCTGTGCGAGTACTGTGGCATTAATTGTAACACTTGTCCGGAAAAGATCTGCCT]




>consensus_2131#1
CGCAAGCAACAACACGGCGGCAGGTGTATTTGGCGGGCTATTTTTCCTCGTTATCGAAAG
TTTGTGTTTTAGTTTTGTGCAATAAAACCGGTGTAGCAGTCGGTGCAACAGTCAGGCAAT
GAGCATGACGATGAACGCAAATCCGAACCGGAAGCGTTTGCGGTCCAACGAAAGCGACGG
ATGCTTTGCGCTGCAGCGCAAAACGTTCGTCAACCAGCAGATGATGGACCAGCAGGATCC
GAACAAAATGAAGCGCATCCTGGCCAAAACTATCAGCTTGCTGTTCCAGGGTGCAAAGAA
CCAGGACAAAGAGTTGGTCATCGATCAGAAGGCGTCGCTGAAAGCCGTCCGTTTGCTTGG
AAGCGGTGAAATAGACTACGATATGAATGCTACCTCCTCCTGGCTGGGAAAGAAGGCTGA
CCGGAAATGTCGCCAGTGCGACCGGATGTCGATCGTGCACGCCGACTGCACCAACTGCAA
TCTGGAGCTGTGCGAGTACTGTGGCATTAATTGTAACACTTGTCCGGAAAAGATCTGCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2131#0      CCAGAATCGGCACGAGGCGGCGGCAGGTGTATTTGGCGGGCTATTTTTCCTCGTTATCGA 60
consensus_2131#1      -CGCAAGCAACA--ACACGGCGGCAGGTGTATTTGGCGGGCTATTTTTCCTCGTTATCGA 57
                       *  ** *  **  *  *******************************************

consensus_2131#0      AAGTTTGTGTTTTAGTTTTGTGCAATAAAACCGGTGTAGCAGTCGGTGCAACAGTCAGGC 120
consensus_2131#1      AAGTTTGTGTTTTAGTTTTGTGCAATAAAACCGGTGTAGCAGTCGGTGCAACAGTCAGGC 117
                      ************************************************************

consensus_2131#0      AATGAGCATGACGATGAACGCAAATCCGAACCGGAAGCGTTTGCGGTCCAACGAAAGCGA 180
consensus_2131#1      AATGAGCATGACGATGAACGCAAATCCGAACCGGAAGCGTTTGCGGTCCAACGAAAGCGA 177
                      ************************************************************

consensus_2131#0      CGGATGCTTTGCGCTGCAGCGCAAAACGTTCGTCAACCAGCAGATGATGGACCAGCAGGA 240
consensus_2131#1      CGGATGCTTTGCGCTGCAGCGCAAAACGTTCGTCAACCAGCAGATGATGGACCAGCAGGA 237
                      ************************************************************

consensus_2131#0      TCCGAACAAAATGAAGCGCATCCTGGCCAAAACTATCAGCTTGCTGTTCCAGGGTGCAAA 300
consensus_2131#1      TCCGAACAAAATGAAGCGCATCCTGGCCAAAACTATCAGCTTGCTGTTCCAGGGTGCAAA 297
                      ************************************************************

consensus_2131#0      GAACCAGGACAAAGAGTTGGTCATCGATCAGAAGGCGTCGCTGAAAGCCGTCCGTTTGCT 360
consensus_2131#1      GAACCAGGACAAAGAGTTGGTCATCGATCAGAAGGCGTCGCTGAAAGCCGTCCGTTTGCT 357
                      ************************************************************

consensus_2131#0      TGGAAGCGGTGAAATAGACTACGATATGAATGCTACCTCCTCCTGGCTGGGAAAGAAGGC 420
consensus_2131#1      TGGAAGCGGTGAAATAGACTACGATATGAATGCTACCTCCTCCTGGCTGGGAAAGAAGGC 417
                      ************************************************************

consensus_2131#0      TGACCGGAAATGTCGCCAGTGCGACCGGATGTCGATCGTGCACGCCGACTGCACCAACTG 480
consensus_2131#1      TGACCGGAAATGTCGCCAGTGCGACCGGATGTCGATCGTGCACGCCGACTGCACCAACTG 477
                      ************************************************************

consensus_2131#0      CAATCTGGAGCTGTGCGAGTACTGTGGCATTAATTGTAACACTTGTCCGGAAAAGATCTG 540
consensus_2131#1      CAATCTGGAGCTGTGCGAGTACTGTGGCATTAATTGTAACACTTGTCCGGAAAAGATCTG 537
                      ************************************************************

consensus_2131#0      CCTCAACTGTGTCACAATATTTCACTGCGTGTCGCATGATTTGCCCTGCTGTGAGCAGTG 600
consensus_2131#1      CCT--------------------------------------------------------- 540
                      ***                                                         

consensus_2131#0      TACAAATGTTTCTATGAAATTCTAGGCCCTAGGAGTGGGCAGGATAAACCATCCGGCCTC 660
consensus_2131#1      ------------------------------------------------------------
                                                                                  

consensus_2131#0      GTT 663
consensus_2131#1      ---