cluster # 2134

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Anopheles gambiae
cluster # 2134 cluster # 2134 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2134#0 length = 713 sequences # 1

consensus_2134#1 length = 285 sequences # 1

consensusID : consensus_2134#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 713
fasta sequence

                              [CCGCGTGTCCACTAGCAAAGAACCTCAGCAATCAGTGAAAAGCGTGGATGTGAGCGTTTTAAGTGATTCTATATGCATAGAAAAATATGGCAGATTTGGTATGAATCCCACTCTCGCCAACAAACGGTTCTGCGCTCAAACCCACCAACCGTGTAACTTTTCATTAATCGCAGAAAAATATACTCCCCACATTTCGGGTGCTATTCTACAGCAAGCCCGAACATTTGCCGATGAAACGCACTCCCAACACTTTCTAATTGGATTTGATCTAATGGGTAGACACTGTGATCTAAATATGCCACCTATTTACCTTAATGCTAGTGCATACATGGATTGGATTCTGTACAATATGAAACTTCCTGTTCAGAATGTCACGCACATAGACATGGAGACCGATTGGTCTAAACTGCTGCAGGGACCGGACTCGGAGAAGCTGCGTCTGTTCAACATGACTACCTGTGGGATCCAAGCATATAATTATACAATGACGTCCTATCCCTGGACTGGTAGGATAGCAATTTATGATAAAACTAAATGTAGAGTAATTGGGCTTTGTTGTGCTAATTAGTGAATGGTATGCCTTGGCTTCGGCAAGTATAATGACAAACTTAACATTTATGCGTTTTATAATTCTAGGAGGAGGAAAACTGAGTTCAAAATGTAATGTAACCACCTATAGCCTAGAGAATCAAGTTATAGAAATCAAAACTGTC]

[+] EMBL BM600427             [CCGCGTGTCCACTAGCAAAGAACCTCAGCAATCAGTGAAAAGCGTGGATGTGAGCGTTTTAAGTGATTCTATATGCATAGAAAAATATGGCAGATTTGGTATGAATCCCACTCTCGCCAACAAACGGTTCTGCGCTCAAACCCACCAACCGTGTAACTTTTCATTAATCGCAGAAAAATATACTCCCCACATTTCGGGTGCTATTCTACAGCAAGCCCGAACATTTGCCGATGAAACGCACTCCCAACACTTTCTAATTGGATTTGATCTAATGGGTAGACACTGTGATCTAAATATGCCACCTATTTACCTTAATGCTAGTGCATACATGGATTGGATTCTGTACAATATGAAACTTCCTGTTCAGAATGTCACGCACATAGACATGGAGACCGATTGGTCTAAACTGCTGCAGGGACCGGACTCGGAGAAGCTGCGTCTGTTCAACATGACTACCTGTGGGATCCAAGCATATAATTATACAATGACGTCCTATCCCTGGACTGGTAGGATAGCAATTTATGATAAAACTAAATGTAGAGTAATTGGGCTTTGTTGTGCTAATTAGTGAATGGTATGCCTTGGCTTCGGCAAGTATAATGACAAACTTAACATTTATGCGTTTTATAATTCTAGGAGGAGGAAAACTGAGTTCAAAATGTAATGTAACCACCTATAGCCTAGAGAATCAAGTTATAGAAATCAAAACTGTC]




>consensus_2134#0
CCGCGTGTCCACTAGCAAAGAACCTCAGCAATCAGTGAAAAGCGTGGATGTGAGCGTTTT
AAGTGATTCTATATGCATAGAAAAATATGGCAGATTTGGTATGAATCCCACTCTCGCCAA
CAAACGGTTCTGCGCTCAAACCCACCAACCGTGTAACTTTTCATTAATCGCAGAAAAATA
TACTCCCCACATTTCGGGTGCTATTCTACAGCAAGCCCGAACATTTGCCGATGAAACGCA
CTCCCAACACTTTCTAATTGGATTTGATCTAATGGGTAGACACTGTGATCTAAATATGCC
ACCTATTTACCTTAATGCTAGTGCATACATGGATTGGATTCTGTACAATATGAAACTTCC
TGTTCAGAATGTCACGCACATAGACATGGAGACCGATTGGTCTAAACTGCTGCAGGGACC
GGACTCGGAGAAGCTGCGTCTGTTCAACATGACTACCTGTGGGATCCAAGCATATAATTA
TACAATGACGTCCTATCCCTGGACTGGTAGGATAGCAATTTATGATAAAACTAAATGTAG
AGTAATTGGGCTTTGTTGTGCTAATTAGTGAATGGTATGCCTTGGCTTCGGCAAGTATAA
TGACAAACTTAACATTTATGCGTTTTATAATTCTAGGAGGAGGAAAACTGAGTTCAAAAT
GTAATGTAACCACCTATAGCCTAGAGAATCAAGTTATAGAAATCAAAACTGTC

consensusID : consensus_2134#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 285
fasta sequence

                              [CTCGACGGCAGAACCCGGCACGTNAGGTGCTAATTAGTGAATGGTACTGCCCTGGCTTCGGCAAGTATAAGTGACAAACTTAACATTTATGCGTTTTATAATTCTAGGAGGAGGAAAACTGAGTTCAAAATGTAATGTAACCACCTATAGCCTAGAGAATCAACGTTATAGAAATCAAAACTGTCTATTTTTCTCCGGATTTCAACAGAAACACAGGTCAAAATGGCATAGCCTTGATAGAATTCTGGCAACCAGCCGACATATCTAACCCATACATCAGACCTA]

[+] EMBL BX469769             [CTCGACGGCAGAACCCGGCACGTNAGGTGCTAATTAGTGAATGGTACTGCCCTGGCTTCGGCAAGTATAAGTGACAAACTTAACATTTATGCGTTTTATAATTCTAGGAGGAGGAAAACTGAGTTCAAAATGTAATGTAACCACCTATAGCCTAGAGAATCAACGTTATAGAAATCAAAACTGTCTATTTTTCTCCGGATTTCAACAGAAACACAGGTCAAAATGGCATAGCCTTGATAGAATTCTGGCAACCAGCCGACATATCTAACCCATACATCAGACCTA]




>consensus_2134#1
CTCGACGGCAGAACCCGGCACGTNAGGTGCTAATTAGTGAATGGTACTGCCCTGGCTTCG
GCAAGTATAAGTGACAAACTTAACATTTATGCGTTTTATAATTCTAGGAGGAGGAAAACT
GAGTTCAAAATGTAATGTAACCACCTATAGCCTAGAGAATCAACGTTATAGAAATCAAAA
CTGTCTATTTTTCTCCGGATTTCAACAGAAACACAGGTCAAAATGGCATAGCCTTGATAG
AATTCTGGCAACCAGCCGACATATCTAACCCATACATCAGACCTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2134#0      CCGCGTGTCCACTAGCAAAGAACCTCAGCAATCAGTGAAAAGCGTGGATGTGAGCGTTTT 60
consensus_2134#1      ------------------------------------------------------------
                                                                                  

consensus_2134#0      AAGTGATTCTATATGCATAGAAAAATATGGCAGATTTGGTATGAATCCCACTCTCGCCAA 120
consensus_2134#1      ------------------------------------------------------------
                                                                                  

consensus_2134#0      CAAACGGTTCTGCGCTCAAACCCACCAACCGTGTAACTTTTCATTAATCGCAGAAAAATA 180
consensus_2134#1      ------------------------------------------------------------
                                                                                  

consensus_2134#0      TACTCCCCACATTTCGGGTGCTATTCTACAGCAAGCCCGAACATTTGCCGATGAAACGCA 240
consensus_2134#1      ------------------------------------------------------------
                                                                                  

consensus_2134#0      CTCCCAACACTTTCTAATTGGATTTGATCTAATGGGTAGACACTGTGATCTAAATATGCC 300
consensus_2134#1      ------------------------------------------------------------
                                                                                  

consensus_2134#0      ACCTATTTACCTTAATGCTAGTGCATACATGGATTGGATTCTGTACAATATGAAACTTCC 360
consensus_2134#1      ------------------------------------------------------------
                                                                                  

consensus_2134#0      TGTTCAGAATGTCACGCACATAGACATGGAGACCGATTGGTCTAAACTGCTGCAGGGACC 420
consensus_2134#1      ------------------------------------------------------------
                                                                                  

consensus_2134#0      GGACTCGGAGAAGCTGCGTCTGTTCAACATGACTACCTGTGGGATCCAAGCATATAATTA 480
consensus_2134#1      ------------------------------------------------------------
                                                                                  

consensus_2134#0      TACAATGACGTCCTATCCCTGGACTGGTAGGATAGCAATTTATGATAAAACTAAATGTAG 540
consensus_2134#1      --------------------------------------------------CTCGACG-GC 9
                                                                        **  * *   

consensus_2134#0      AGTAATTGGGCTTTGTTGTGCTAATTAGTGAATGGTA-TGCCTTGGCTTCGGCAAGTATA 599
consensus_2134#1      AGAACCCGGCACGTNAGGTGCTAATTAGTGAATGGTACTGCCCTGGCTTCGGCAAGTATA 69
                      ** *   **    *   ******************** **** *****************

consensus_2134#0      A-TGACAAACTTAACATTTATGCGTTTTATAATTCTAGGAGGAGGAAAACTGAGTTCAAA 658
consensus_2134#1      AGTGACAAACTTAACATTTATGCGTTTTATAATTCTAGGAGGAGGAAAACTGAGTTCAAA 129
                      * **********************************************************

consensus_2134#0      ATGTAATGTAACCACCTATAGCCTAGAGAATCAA-GTTATAGAAATCAAAACTGTC---- 713
consensus_2134#1      ATGTAATGTAACCACCTATAGCCTAGAGAATCAACGTTATAGAAATCAAAACTGTCTATT 189
                      ********************************** *********************    

consensus_2134#0      ------------------------------------------------------------
consensus_2134#1      TTTCTCCGGATTTCAACAGAAACACAGGTCAAAATGGCATAGCCTTGATAGAATTCTGGC 249
                                                                                  

consensus_2134#0      ------------------------------------
consensus_2134#1      AACCAGCCGACATATCTAACCCATACATCAGACCTA 285