cluster # 2139

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 2139 cluster # 2139 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2139#0 length = 1124 sequences # 1

consensus_2139#1 length = 508 sequences # 1

consensusID : consensus_2139#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1124
fasta sequence

                              [AGATCCCCGAGGTAGTTTCGTAGTACCCACAACGCAATCTCTAGTAGCTNCTGAGCTACATTTCAATCAGACGAGTAATCAAACCGGAACATTGATATCCGAACCGTTCCTTCAACCATTTTTTCACGCATCGCTCAGTCAAAAGTCCCGTAAAATTTTGCAGATACTTGAAATGCCGAGGAATTTCCTCGGATCAAGGCACCCGTTCAGAAAGTATTCTAAATTTTTGGAACGGGGGAAATTGGGTAAGAAACCGAGTTTCANGAAGGCTTCCTTGACCGCAAGTNGCAACCGGATGGGTTCGANAGCGCAGAAAACCGGCCTCCCGAGGTTAACCCTAAGCGGTTTTACCAAAAGTGGCTTCCAAGAATTTGAACAAAATTTTCAATTACAACTTCCTTNTAACGANCCGGAATTGGTTAAGAATTTCTTCCCGGACCTTAAAAACCNGAAANTCAAGGTTGGAAGGAAAACGGAATTTGGGTATAAACCAAGGAACCCCCACAAAGGTGGGGCCATTAACCGGTAACCGGGAAAATTCCCTGGTTGGCCAAGGGAAANAGGAACATTATTCTTAAAGAAATTTTCCACCAAAAACCACCCACAGTTGGTTGGGNAACAACATTACATTTAACCCCAAGGGGCCAATTTGGGGNGTTCACCTTAACACGGGGTCACCCTGGCGCCATTTTCCTTCCCCCCAAAAGCGGGCCTTTGCAGATTTGGGGTTCCACACTGCAAATTTGTGCCTTTTCTACACAGGCCAGGCTCCGCAATTTAANTTTTCCTTAACGGACACAACAGCCACAGGAAGGCCAAAGGGCGCGCTNTTTTCCAAGGCTTACCNCGGCACCCGGAANTTANAGGTGGACNTTTGTCCAGGAATATTTGGGCACCCCCCCCCCAAAGGAAAAAAACTTGGGGTTGGGGGGAATTAAACCCGCGGGTGTATAATTTACAACCGGCCGACAATTTTCCNCCAACCGGTTCCAAGCGACTTTGCCACCGGTGGCAGGCAAGTGTNACCNGGTATGGCTTGANTACAAGTTCAAGGTACTAAATTCAACCGAACCNAAGGAGAAATTGGCACGACGAGGGGCGACGNCACCCATGGNTAGGGGCCG]

[+] EMBL AL696124             [AGATCCCCGAGGTAGTTTCGTAGTACCCACAACGCAATCTCTAGTAGCTNCTGAGCTACATTTCAATCAGACGAGTAATCAAACCGGAACATTGATATCCGAACCGTTCCTTCAACCATTTTTTCACGCATCGCTCAGTCAAAAGTCCCGTAAAATTTTGCAGATACTTGAAATGCCGAGGAATTTCCTCGGATCAAGGCACCCGTTCAGAAAGTATTCTAAATTTTTGGAACGGGGGAAATTGGGTAAGAAACCGAGTTTCANGAAGGCTTCCTTGACCGCAAGTNGCAACCGGATGGGTTCGANAGCGCAGAAAACCGGCCTCCCGAGGTTAACCCTAAGCGGTTTTACCAAAAGTGGCTTCCAAGAATTTGAACAAAATTTTCAATTACAACTTCCTTNTAACGANCCGGAATTGGTTAAGAATTTCTTCCCGGACCTTAAAAACCNGAAANTCAAGGTTGGAAGGAAAACGGAATTTGGGTATAAACCAAGGAACCCCCACAAAGGTGGGGCCATTAACCGGTAACCGGGAAAATTCCCTGGTTGGCCAAGGGAAANAGGAACATTATTCTTAAAGAAATTTTCCACCAAAAACCACCCACAGTTGGTTGGGNAACAACATTACATTTAACCCCAAGGGGCCAATTTGGGGNGTTCACCTTAACACGGGGTCACCCTGGCGCCATTTTCCTTCCCCCCAAAAGCGGGCCTTTGCAGATTTGGGGTTCCACACTGCAAATTTGTGCCTTTTCTACACAGGCCAGGCTCCGCAATTTAANTTTTCCTTAACGGACACAACAGCCACAGGAAGGCCAAAGGGCGCGCTNTTTTCCAAGGCTTACCNCGGCACCCGGAANTTANAGGTGGACNTTTGTCCAGGAATATTTGGGCACCCCCCCCCCAAAGGAAAAAAACTTGGGGTTGGGGGGAATTAAACCCGCGGGTGTATAATTTACAACCGGCCGACAATTTTCCNCCAACCGGTTCCAAGCGACTTTGCCACCGGTGGCAGGCAAGTGTNACCNGGTATGGCTTGANTACAAGTTCAAGGTACTAAATTCAACCGAACCNAAGGAGAAATTGGCACGACGAGGGGCGACGNCACCCATGGNTAGGGGCCG]




>consensus_2139#0
AGATCCCCGAGGTAGTTTCGTAGTACCCACAACGCAATCTCTAGTAGCTNCTGAGCTACA
TTTCAATCAGACGAGTAATCAAACCGGAACATTGATATCCGAACCGTTCCTTCAACCATT
TTTTCACGCATCGCTCAGTCAAAAGTCCCGTAAAATTTTGCAGATACTTGAAATGCCGAG
GAATTTCCTCGGATCAAGGCACCCGTTCAGAAAGTATTCTAAATTTTTGGAACGGGGGAA
ATTGGGTAAGAAACCGAGTTTCANGAAGGCTTCCTTGACCGCAAGTNGCAACCGGATGGG
TTCGANAGCGCAGAAAACCGGCCTCCCGAGGTTAACCCTAAGCGGTTTTACCAAAAGTGG
CTTCCAAGAATTTGAACAAAATTTTCAATTACAACTTCCTTNTAACGANCCGGAATTGGT
TAAGAATTTCTTCCCGGACCTTAAAAACCNGAAANTCAAGGTTGGAAGGAAAACGGAATT
TGGGTATAAACCAAGGAACCCCCACAAAGGTGGGGCCATTAACCGGTAACCGGGAAAATT
CCCTGGTTGGCCAAGGGAAANAGGAACATTATTCTTAAAGAAATTTTCCACCAAAAACCA
CCCACAGTTGGTTGGGNAACAACATTACATTTAACCCCAAGGGGCCAATTTGGGGNGTTC
ACCTTAACACGGGGTCACCCTGGCGCCATTTTCCTTCCCCCCAAAAGCGGGCCTTTGCAG
ATTTGGGGTTCCACACTGCAAATTTGTGCCTTTTCTACACAGGCCAGGCTCCGCAATTTA
ANTTTTCCTTAACGGACACAACAGCCACAGGAAGGCCAAAGGGCGCGCTNTTTTCCAAGG
CTTACCNCGGCACCCGGAANTTANAGGTGGACNTTTGTCCAGGAATATTTGGGCACCCCC
CCCCCAAAGGAAAAAAACTTGGGGTTGGGGGGAATTAAACCCGCGGGTGTATAATTTACA
ACCGGCCGACAATTTTCCNCCAACCGGTTCCAAGCGACTTTGCCACCGGTGGCAGGCAAG
TGTNACCNGGTATGGCTTGANTACAAGTTCAAGGTACTAAATTCAACCGAACCNAAGGAG
AAATTGGCACGACGAGGGGCGACGNCACCCATGGNTAGGGGCCG

consensusID : consensus_2139#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 508
fasta sequence

                              [AGATCCCCGAGGTGCGTCGTAGTACCACAACGCAATCTCTAGTAGCTCCGAGCTACATTTCAATCAGACGAGTAATCAAACCGGAACATTGATATCCGAACCGTTCCTTCAACCATTTTTCACGCATCGCTCAGTCAAAAGTCCCGTAAAATTTTGCAGCATCTGAATGCCGAGAATTCCTCGGATCAAGCACCGTCAGAAGTTTCTAATTTTGACGGGGGAATGGTAGAACGAGTTCAAGAGGCTCTGACGCAGTGCAACGATGGGTCGAGCGCAGAAACGCCTCCGAGTACCCTAGCGTTACAATGCTCAGATGACAATTCATCACTCTTAGTCGATGTAGATTCTCCGACTAAACGAATCAGTGAGAACGATTGGTTAACAGACCCAAGTGGCATACCGTACGGAATCCTGTGCCAAGGAAGAATATCTAAGATTCACAAACACAATGTGGAAATATTACCAGGCATGGGGTACTACGGCACTGGATTTCTCCCAAGCGGCTTGA]

[+] EMBL AL931689             [AGATCCCCGAGGTGCGTCGTAGTACCACAACGCAATCTCTAGTAGCTCCGAGCTACATTTCAATCAGACGAGTAATCAAACCGGAACATTGATATCCGAACCGTTCCTTCAACCATTTTTCACGCATCGCTCAGTCAAAAGTCCCGTAAAATTTTGCAGCATCTGAATGCCGAGAATTCCTCGGATCAAGCACCGTCAGAAGTTTCTAATTTTGACGGGGGAATGGTAGAACGAGTTCAAGAGGCTCTGACGCAGTGCAACGATGGGTCGAGCGCAGAAACGCCTCCGAGTACCCTAGCGTTACAATGCTCAGATGACAATTCATCACTCTTAGTCGATGTAGATTCTCCGACTAAACGAATCAGTGAGAACGATTGGTTAACAGACCCAAGTGGCATACCGTACGGAATCCTGTGCCAAGGAAGAATATCTAAGATTCACAAACACAATGTGGAAATATTACCAGGCATGGGGTACTACGGCACTGGATTTCTCCCAAGCGGCTTGA]




>consensus_2139#1
AGATCCCCGAGGTGCGTCGTAGTACCACAACGCAATCTCTAGTAGCTCCGAGCTACATTT
CAATCAGACGAGTAATCAAACCGGAACATTGATATCCGAACCGTTCCTTCAACCATTTTT
CACGCATCGCTCAGTCAAAAGTCCCGTAAAATTTTGCAGCATCTGAATGCCGAGAATTCC
TCGGATCAAGCACCGTCAGAAGTTTCTAATTTTGACGGGGGAATGGTAGAACGAGTTCAA
GAGGCTCTGACGCAGTGCAACGATGGGTCGAGCGCAGAAACGCCTCCGAGTACCCTAGCG
TTACAATGCTCAGATGACAATTCATCACTCTTAGTCGATGTAGATTCTCCGACTAAACGA
ATCAGTGAGAACGATTGGTTAACAGACCCAAGTGGCATACCGTACGGAATCCTGTGCCAA
GGAAGAATATCTAAGATTCACAAACACAATGTGGAAATATTACCAGGCATGGGGTACTAC
GGCACTGGATTTCTCCCAAGCGGCTTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2139#0      AGATCCCCGAGGTAGTTTCGTAGTACCCACAACGCAATCTCTAGTAGCTNCTGAGCTACA 60
consensus_2139#1      AGATCCCCGAGGT-GCGTCGTAGTACC-ACAACGCAATCTCTAGTAGCTCC-GAGCTACA 57
                      ************* *  ********** ********************* * ********

consensus_2139#0      TTTCAATCAGACGAGTAATCAAACCGGAACATTGATATCCGAACCGTTCCTTCAACCATT 120
consensus_2139#1      TTTCAATCAGACGAGTAATCAAACCGGAACATTGATATCCGAACCGTTCCTTCAACCATT 117
                      ************************************************************

consensus_2139#0      TTTTCACGCATCGCTCAGTCAAAAGTCCCGTAAAATTTTGCAGATACTTGAAATGCCGAG 180
consensus_2139#1      TTT-CACGCATCGCTCAGTCAAAAGTCCCGTAAAATTTTGCAG-CATCTGAA-TGCCGAG 174
                      *** ***************************************  *  **** *******

consensus_2139#0      GAATTTCCTCGGATCAAGGCACCCGTTCAGAAAGTATTCTAAATTTTTGGAACGGGGGAA 240
consensus_2139#1      AA--TTCCTCGGATCAAG-CACC--GTCAGAAG---TTTCTAATTTT---GACGGGGGAA 223
                       *  ************** ****   ******    **   ******    *********

consensus_2139#0      ATTGGGTAAGAAACCGAGTTTCANGAAGGCTTCCTTGACCGCAAGTNGCAACCGGATGGG 300
consensus_2139#1      ------TGGTAGAACGAGTT-CAAGAGG----CTCTGAC-GCAG--TGCAAC--GATGGG 267
                            *   * * ****** ** ** *    *  **** ***    *****  ******

consensus_2139#0      TTCGANAGCGCAGAAAACCGGCCTCCCG-AGGTTAACCCTA-AGCGGTTTTACCAAAAGT 358
consensus_2139#1      TC---GAGCGCAGAAA--CGCCTCCGAGTACCCTAGCGTTACAATGCTCAGATGACAATT 322
                      *     **********  ** *  *  * *   ** *  ** *  * *   *  * ** *

consensus_2139#0      GGCTTCCAAGAATTTGAACAAAATTTTCAATTACAACTTCCTTNTAACGANCCGGAATTG 418
consensus_2139#1      CATCACTCTTAGTCGATGTAGATTCTCCGACTA-AACGAATCAGTGAGAAC----GATTG 377
                           *    * *      * * * * * * ** ***       * *  *      ****

consensus_2139#0      GTTAAGAATTTCTTCCCGGACCTTAAAAACCNGAAANTCAAGGTTGGAAGGAAAAC--GG 476
consensus_2139#1      GTTAACAGACCCAAGTGGCATACCGTA---CGGAATCCTGTGCCAAGGAAGAATATCTAA 434
                      ***** *    *     * *      *   * ***      *    * * *** *     

consensus_2139#0      AATTTGGGTATAAACCAAGGAACCCCCACAAAGGTGGGGCCATTAACCGGTAACCGGGAA 536
consensus_2139#1      GATTCACAAACACAATGTGGAAATATTACCAGGCATGGGGTACTA--CGGCA--CTGGAT 490
                       ***     * * *    ****     ** * *   ***  * **  *** *  * *** 

consensus_2139#0      AATTCCCTGGTTGGCCAAGGGAAANAGGAACATTATTCTTAAAGAAATTTTCCACCAAAA 596
consensus_2139#1      TTCTCCCAAGCGGCTTGA------------------------------------------ 508
                         ****  *  *    *                                          

consensus_2139#0      ACCACCCACAGTTGGTTGGGNAACAACATTACATTTAACCCCAAGGGGCCAATTTGGGGN 656
consensus_2139#1      ------------------------------------------------------------
                                                                                  

consensus_2139#0      GTTCACCTTAACACGGGGTCACCCTGGCGCCATTTTCCTTCCCCCCAAAAGCGGGCCTTT 716
consensus_2139#1      ------------------------------------------------------------
                                                                                  

consensus_2139#0      GCAGATTTGGGGTTCCACACTGCAAATTTGTGCCTTTTCTACACAGGCCAGGCTCCGCAA 776
consensus_2139#1      ------------------------------------------------------------
                                                                                  

consensus_2139#0      TTTAANTTTTCCTTAACGGACACAACAGCCACAGGAAGGCCAAAGGGCGCGCTNTTTTCC 836
consensus_2139#1      ------------------------------------------------------------
                                                                                  

consensus_2139#0      AAGGCTTACCNCGGCACCCGGAANTTANAGGTGGACNTTTGTCCAGGAATATTTGGGCAC 896
consensus_2139#1      ------------------------------------------------------------
                                                                                  

consensus_2139#0      CCCCCCCCCAAAGGAAAAAAACTTGGGGTTGGGGGGAATTAAACCCGCGGGTGTATAATT 956
consensus_2139#1      ------------------------------------------------------------
                                                                                  

consensus_2139#0      TACAACCGGCCGACAATTTTCCNCCAACCGGTTCCAAGCGACTTTGCCACCGGTGGCAGG 1016
consensus_2139#1      ------------------------------------------------------------
                                                                                  

consensus_2139#0      CAAGTGTNACCNGGTATGGCTTGANTACAAGTTCAAGGTACTAAATTCAACCGAACCNAA 1076
consensus_2139#1      ------------------------------------------------------------
                                                                                  

consensus_2139#0      GGAGAAATTGGCACGACGAGGGGCGACGNCACCCATGGNTAGGGGCCG 1124
consensus_2139#1      ------------------------------------------------