cluster # 2142

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Anopheles gambiae
cluster # 2142 cluster # 2142 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2142#0 length = 769 sequences # 1

consensus_2142#1 length = 618 sequences # 1

consensusID : consensus_2142#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 769
fasta sequence

                              [ATCCCCCGAGGTTATCTCCAAGTACGTACTCGAACGCGGAGCTGCGAAGCTGCTCAACTCGCACGCGGAAGATGTGCGCACGTTGCAGACGAAGTATCGCAACCTGCAGAACCAAAACAAGGAGCTGATCAGCAAGCTGAAGTGCGAAGGACGCCCACATACTGACGATCACGGACCAGAACAAGCATCCTGGTGCAGCTCAACAAAGATAAACATTTAGAAGAACGCGAAAGACTGGCCGACAGTGGTGCGGTACCTAGAAAACAGTGCTCATGGAGAAGGACAACGATGCCAAATTACTCTCTAGAAGGATTCAACTCGCATTCGAAAAATTTTAAAGCCCAACTGCAGCAGGAAATGCTGAAGCAACGGGAGCTGGCGCAGAAGCTCGAGCGCACGCAGCATGAAGTCAACCGGCTCAACTCTGTCATTGAGATATACGAGAAACGCACTCCTTCGACGCTGTTGAAGAATAGCAACTTTCTGATGAAGACGTCCAAAGCATCCCTCAGGGCCAGGCAGCAGCGAAANACAGGCACGAGGCNAATGGCGAAGGCAGGGCACACATTGAGTTCGGANTAACGGGAAAAACCGGGTTTCCCTTCGGCGTACACAAAATCCGCCTTTTANCCCCGAAACATTTTTCCGAAAGCCCTTTCGGCNGGGATAGAACGNAAANNCTNGCGTCCGATTGATGCCCCGCCACTGGGTTGAAGACACCAGCAAGGTCNCCGCACAAAGGGGANGGGGGGGCAAATTACCCCAACNN]

[+] EMBL AL934483             [ATCCCCCGAGGTTATCTCCAAGTACGTACTCGAACGCGGAGCTGCGAAGCTGCTCAACTCGCACGCGGAAGATGTGCGCACGTTGCAGACGAAGTATCGCAACCTGCAGAACCAAAACAAGGAGCTGATCAGCAAGCTGAAGTGCGAAGGACGCCCACATACTGACGATCACGGACCAGAACAAGCATCCTGGTGCAGCTCAACAAAGATAAACATTTAGAAGAACGCGAAAGACTGGCCGACAGTGGTGCGGTACCTAGAAAACAGTGCTCATGGAGAAGGACAACGATGCCAAATTACTCTCTAGAAGGATTCAACTCGCATTCGAAAAATTTTAAAGCCCAACTGCAGCAGGAAATGCTGAAGCAACGGGAGCTGGCGCAGAAGCTCGAGCGCACGCAGCATGAAGTCAACCGGCTCAACTCTGTCATTGAGATATACGAGAAACGCACTCCTTCGACGCTGTTGAAGAATAGCAACTTTCTGATGAAGACGTCCAAAGCATCCCTCAGGGCCAGGCAGCAGCGAAANACAGGCACGAGGCNAATGGCGAAGGCAGGGCACACATTGAGTTCGGANTAACGGGAAAAACCGGGTTTCCCTTCGGCGTACACAAAATCCGCCTTTTANCCCCGAAACATTTTTCCGAAAGCCCTTTCGGCNGGGATAGAACGNAAANNCTNGCGTCCGATTGATGCCCCGCCACTGGGTTGAAGACACCAGCAAGGTCNCCGCACAAAGGGGANGGGGGGGCAAATTACCCCAACNN]




>consensus_2142#0
ATCCCCCGAGGTTATCTCCAAGTACGTACTCGAACGCGGAGCTGCGAAGCTGCTCAACTC
GCACGCGGAAGATGTGCGCACGTTGCAGACGAAGTATCGCAACCTGCAGAACCAAAACAA
GGAGCTGATCAGCAAGCTGAAGTGCGAAGGACGCCCACATACTGACGATCACGGACCAGA
ACAAGCATCCTGGTGCAGCTCAACAAAGATAAACATTTAGAAGAACGCGAAAGACTGGCC
GACAGTGGTGCGGTACCTAGAAAACAGTGCTCATGGAGAAGGACAACGATGCCAAATTAC
TCTCTAGAAGGATTCAACTCGCATTCGAAAAATTTTAAAGCCCAACTGCAGCAGGAAATG
CTGAAGCAACGGGAGCTGGCGCAGAAGCTCGAGCGCACGCAGCATGAAGTCAACCGGCTC
AACTCTGTCATTGAGATATACGAGAAACGCACTCCTTCGACGCTGTTGAAGAATAGCAAC
TTTCTGATGAAGACGTCCAAAGCATCCCTCAGGGCCAGGCAGCAGCGAAANACAGGCACG
AGGCNAATGGCGAAGGCAGGGCACACATTGAGTTCGGANTAACGGGAAAAACCGGGTTTC
CCTTCGGCGTACACAAAATCCGCCTTTTANCCCCGAAACATTTTTCCGAAAGCCCTTTCG
GCNGGGATAGAACGNAAANNCTNGCGTCCGATTGATGCCCCGCCACTGGGTTGAAGACAC
CAGCAAGGTCNCCGCACAAAGGGGANGGGGGGGCAAATTACCCCAACNN

consensusID : consensus_2142#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 618
fasta sequence

                              [AACGATGCCAAATTACTCTCTAGAAGGATTCAACTCGATTCGAAAAATTTTAAAGCCCAACTGCAGCAGGAAATGCTGAAGCAACGGGAGCTGGCGCAGAAGCTCGAGCGCACGCAGCATGAAGTCAACCGGCTCAACTCTGTCATTGAGATATACGAGAAACGCACTCCTTCGACGCTGTTGAAGAATAGCAACTTTCTGATGAAGACGTCCAAACCATCCTCAGGGCAGCAGCAGCAACCACCACAGCCAATGCAGCAGCAAATGATTCGATACGGAAACGGTTCCTCGCACAAATCCCCTTACCCGAACTTTTCCGAACCTTCGCCGGTAACGAACCTGGACATGAGCCCGAAGGTGAAACCAAACGCTCACGAAAGAGGCGAAGGGGACAAATCACCCACTCCCAGCCCGAGAATACTGCAACCCTTGTCGCCCCGGGACGAGGAAACGCCTTCCGCTCACCAGGCCTCCTCCAAGCTTAGGAAGAGACACAGCTCCAGAAAGCACAAGGGCGACGCACAATCGGACGAGACCGGCACAAACGGAAAGTCGGACGGCACGGCAGAGCACCAGTACGACGAGGGCATGTGCTCCGAGTTTAACCAGTACGCGCTG]

[+] EMBL BX620947             [AACGATGCCAAATTACTCTCTAGAAGGATTCAACTCGATTCGAAAAATTTTAAAGCCCAACTGCAGCAGGAAATGCTGAAGCAACGGGAGCTGGCGCAGAAGCTCGAGCGCACGCAGCATGAAGTCAACCGGCTCAACTCTGTCATTGAGATATACGAGAAACGCACTCCTTCGACGCTGTTGAAGAATAGCAACTTTCTGATGAAGACGTCCAAACCATCCTCAGGGCAGCAGCAGCAACCACCACAGCCAATGCAGCAGCAAATGATTCGATACGGAAACGGTTCCTCGCACAAATCCCCTTACCCGAACTTTTCCGAACCTTCGCCGGTAACGAACCTGGACATGAGCCCGAAGGTGAAACCAAACGCTCACGAAAGAGGCGAAGGGGACAAATCACCCACTCCCAGCCCGAGAATACTGCAACCCTTGTCGCCCCGGGACGAGGAAACGCCTTCCGCTCACCAGGCCTCCTCCAAGCTTAGGAAGAGACACAGCTCCAGAAAGCACAAGGGCGACGCACAATCGGACGAGACCGGCACAAACGGAAAGTCGGACGGCACGGCAGAGCACCAGTACGACGAGGGCATGTGCTCCGAGTTTAACCAGTACGCGCTG]




>consensus_2142#1
AACGATGCCAAATTACTCTCTAGAAGGATTCAACTCGATTCGAAAAATTTTAAAGCCCAA
CTGCAGCAGGAAATGCTGAAGCAACGGGAGCTGGCGCAGAAGCTCGAGCGCACGCAGCAT
GAAGTCAACCGGCTCAACTCTGTCATTGAGATATACGAGAAACGCACTCCTTCGACGCTG
TTGAAGAATAGCAACTTTCTGATGAAGACGTCCAAACCATCCTCAGGGCAGCAGCAGCAA
CCACCACAGCCAATGCAGCAGCAAATGATTCGATACGGAAACGGTTCCTCGCACAAATCC
CCTTACCCGAACTTTTCCGAACCTTCGCCGGTAACGAACCTGGACATGAGCCCGAAGGTG
AAACCAAACGCTCACGAAAGAGGCGAAGGGGACAAATCACCCACTCCCAGCCCGAGAATA
CTGCAACCCTTGTCGCCCCGGGACGAGGAAACGCCTTCCGCTCACCAGGCCTCCTCCAAG
CTTAGGAAGAGACACAGCTCCAGAAAGCACAAGGGCGACGCACAATCGGACGAGACCGGC
ACAAACGGAAAGTCGGACGGCACGGCAGAGCACCAGTACGACGAGGGCATGTGCTCCGAG
TTTAACCAGTACGCGCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2142#0      ATCCCCCGAGGTTATCTCCAAGTACGTACTCGAACGCGGAGCTGCGAAGCTGCTCAACTC 60
consensus_2142#1      ------------------------------------------------------------
                                                                                  

consensus_2142#0      GCACGCGGAAGATGTGCGCACGTTGCAGACGAAGTATCGCAACCTGCAGAACCAAAACAA 120
consensus_2142#1      ------------------------------------------------------------
                                                                                  

consensus_2142#0      GGAGCTGATCAGCAAGCTGAAGTGCGAAGGACGCCCACATACTGACGATCACGGACCAGA 180
consensus_2142#1      ------------------------------------------------------------
                                                                                  

consensus_2142#0      ACAAGCATCCTGGTGCAGCTCAACAAAGATAAACATTTAGAAGAACGCGAAAGACTGGCC 240
consensus_2142#1      ------------------------------------------------------------
                                                                                  

consensus_2142#0      GACAGTGGTGCGGTACCTAGAAAACAGTGCTCATGGAGAAGGACAACGATGCCAAATTAC 300
consensus_2142#1      --------------------------------------------AACGATGCCAAATTAC 16
                                                                  ****************

consensus_2142#0      TCTCTAGAAGGATTCAACTCGCATTCGAAAAATTTTAAAGCCCAACTGCAGCAGGAAATG 360
consensus_2142#1      TCTCTAGAAGGATTCAACTCG-ATTCGAAAAATTTTAAAGCCCAACTGCAGCAGGAAATG 75
                      ********************* **************************************

consensus_2142#0      CTGAAGCAACGGGAGCTGGCGCAGAAGCTCGAGCGCACGCAGCATGAAGTCAACCGGCTC 420
consensus_2142#1      CTGAAGCAACGGGAGCTGGCGCAGAAGCTCGAGCGCACGCAGCATGAAGTCAACCGGCTC 135
                      ************************************************************

consensus_2142#0      AACTCTGTCATTGAGATATACGAGAAACGCACTCCTTCGACGCTGTTGAAGAATAGCAAC 480
consensus_2142#1      AACTCTGTCATTGAGATATACGAGAAACGCACTCCTTCGACGCTGTTGAAGAATAGCAAC 195
                      ************************************************************

consensus_2142#0      TTTCTGATGAAGACGTCCAAAGCATCCCTCAGGGCCAGGCAGCAGCGAAANACAGGCACG 540
consensus_2142#1      TTTCTGATGAAGACGTCCAAACCATCC-TCAGGGC--AGCAGCAGCAACCACCACAGCCA 252
                      ********************* ***** *******   ******** *    **    * 

consensus_2142#0      AGGCNAATGGCGAAGGCAGGGCACACATTGAGTTC---GGANTAACGGGAAAAACCGGGT 597
consensus_2142#1      ATGCAGCAGCAAATGATTCGATACGGAAACGGTTCCTCGCACAAATCCCCTTACCCGAAC 312
                      * **    *   * *    *  **  *    ****   * *  **       * ***   

consensus_2142#0      TTC------CCTTCGGCGTACACAAAATCCGCCTTTTANCCC----CGAAAC---ATTTT 644
consensus_2142#1      TTTTCCGAACCTTCGCCGGTAACGAACCTGGACATGAGCCCGAAGGTGAAACCAAACGCT 372
                      **       ****** **   ** **    * * *    **      *****   *   *

consensus_2142#0      TCCGAAAGCCCTTTCGGCNGGGATAGAACGNAAANNCTN-GCGTCCGATTGATGC----C 699
consensus_2142#1      CACGAAAGAG---GCGAAGGGGACAAATCACCCACTCCCAGCCCGAGAATACTGCAACCC 429
                        ******      **   **** * * *    *  *   **    ** *  ***    *

consensus_2142#0      CCGCCACT--GGGTTGAAGACAC-CAGCAAGGTCNCCG------CACAAAGGGGANGGGG 750
consensus_2142#1      TTGTCGCCCCGGGACGAGGAAACGCCTTCCGCTCACCAGGCCTCCTCCAAGCTTAGGAAG 489
                        * * *   ***  ** ** ** *     * ** **       * * ***   * *  *

consensus_2142#0      GGGCAAATTACCCCAACNN----------------------------------------- 769
consensus_2142#1      AGACACAGCTCCAGAAAGCACAAGGGCGACGCACAATCGGACGAGACCGGCACAAACGGA 549
                       * ** *   **  **                                            

consensus_2142#0      ------------------------------------------------------------
consensus_2142#1      AAGTCGGACGGCACGGCAGAGCACCAGTACGACGAGGGCATGTGCTCCGAGTTTAACCAG 609
                                                                                  

consensus_2142#0      ---------
consensus_2142#1      TACGCGCTG 618