cluster # 2148

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Anopheles gambiae
cluster # 2148 cluster # 2148 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2148#0 length = 685 sequences # 1

consensus_2148#1 length = 251 sequences # 1

consensusID : consensus_2148#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 685
fasta sequence

                              [GCAGAATTCCGCACGAGTGGGGAAGAGAATGGGAATTAGGACGGTACAAGAAACAAACTAAAATTAAAGCGAGTTGTGCGAGTGGGTGTGAGTGTGTGTATCTGATGAACTGAACAGAGAGTATCATTACTCATCCTCCTCCTCCAACCAACCTACATTTAAAGCAAAACATTCCTCAGCAACAGCAACAAAAAAAGGCGCAAAAACGTACAACATTGTATAATCTCGATTTCTTACCCGGGATCTCTGCATAATTAGTAAGGCACGCTCTCACTGTAATTAAGGATGGCGTCGTAGGTCGATGGCTGCAAGGAAAAGGATCTTTGGAGAAAAGGACAGGACACCACNNACACACAAAACACACACNATTCAGTCAGAGGCATCGANATCGNACGAAGTCGCAGTCCACCTCTAACCACGGGCAACCTATAGCTGGGAACATACCGAGCAATAAGATCACTTTCAACAGGCCCAAATTGTTGAAANAGCCATTTTCCAGGGCGGGTAACGCCNAGTACCTTCCTGTAAGCGGCGAGCCCGAAACNNACGAGCAGAGGGGCATTCCACGAATTGGTTAGAANAGCCTNATTCCACGAGGAGCGAAGCGACCGGCACGGCGANCGGGCCAACAAGCAGGAGGGANCAGCGGGNCAGGTTGAATAGACCGGCAAAGGGCGCTTCCACG]

[+] EMBL BX468836             [GCAGAATTCCGCACGAGTGGGGAAGAGAATGGGAATTAGGACGGTACAAGAAACAAACTAAAATTAAAGCGAGTTGTGCGAGTGGGTGTGAGTGTGTGTATCTGATGAACTGAACAGAGAGTATCATTACTCATCCTCCTCCTCCAACCAACCTACATTTAAAGCAAAACATTCCTCAGCAACAGCAACAAAAAAAGGCGCAAAAACGTACAACATTGTATAATCTCGATTTCTTACCCGGGATCTCTGCATAATTAGTAAGGCACGCTCTCACTGTAATTAAGGATGGCGTCGTAGGTCGATGGCTGCAAGGAAAAGGATCTTTGGAGAAAAGGACAGGACACCACNNACACACAAAACACACACNATTCAGTCAGAGGCATCGANATCGNACGAAGTCGCAGTCCACCTCTAACCACGGGCAACCTATAGCTGGGAACATACCGAGCAATAAGATCACTTTCAACAGGCCCAAATTGTTGAAANAGCCATTTTCCAGGGCGGGTAACGCCNAGTACCTTCCTGTAAGCGGCGAGCCCGAAACNNACGAGCAGAGGGGCATTCCACGAATTGGTTAGAANAGCCTNATTCCACGAGGAGCGAAGCGACCGGCACGGCGANCGGGCCAACAAGCAGGAGGGANCAGCGGGNCAGGTTGAATAGACCGGCAAAGGGCGCTTCCACG]




>consensus_2148#0
GCAGAATTCCGCACGAGTGGGGAAGAGAATGGGAATTAGGACGGTACAAGAAACAAACTA
AAATTAAAGCGAGTTGTGCGAGTGGGTGTGAGTGTGTGTATCTGATGAACTGAACAGAGA
GTATCATTACTCATCCTCCTCCTCCAACCAACCTACATTTAAAGCAAAACATTCCTCAGC
AACAGCAACAAAAAAAGGCGCAAAAACGTACAACATTGTATAATCTCGATTTCTTACCCG
GGATCTCTGCATAATTAGTAAGGCACGCTCTCACTGTAATTAAGGATGGCGTCGTAGGTC
GATGGCTGCAAGGAAAAGGATCTTTGGAGAAAAGGACAGGACACCACNNACACACAAAAC
ACACACNATTCAGTCAGAGGCATCGANATCGNACGAAGTCGCAGTCCACCTCTAACCACG
GGCAACCTATAGCTGGGAACATACCGAGCAATAAGATCACTTTCAACAGGCCCAAATTGT
TGAAANAGCCATTTTCCAGGGCGGGTAACGCCNAGTACCTTCCTGTAAGCGGCGAGCCCG
AAACNNACGAGCAGAGGGGCATTCCACGAATTGGTTAGAANAGCCTNATTCCACGAGGAG
CGAAGCGACCGGCACGGCGANCGGGCCAACAAGCAGGAGGGANCAGCGGGNCAGGTTGAA
TAGACCGGCAAAGGGCGCTTCCACG

consensusID : consensus_2148#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 251
fasta sequence

                              [CAGGTAAAGTATCATTTACTCATCCTCCTCCTCCACACTACATTAAAGCAAAACATTCCTCAGCAACAGGCAACAAAAAAGGCGCAAAAACGTACAACATTGTATAATCTCGATTCTTACCCGGGATCTCTGCATAAAATTAGTTAAAAGGCACGCCTCCTNCACTGGTAATTAAGGATGGCGTTGTAGTCGATGGCTGCAGGGGAAAAGGATCTTTGGAGAAAGACAGACACACACACACACAAAACAAA]

[+] EMBL AL932823             [CAGGTAAAGTATCATTTACTCATCCTCCTCCTCCACACTACATTAAAGCAAAACATTCCTCAGCAACAGGCAACAAAAAAGGCGCAAAAACGTACAACATTGTATAATCTCGATTCTTACCCGGGATCTCTGCATAAAATTAGTTAAAAGGCACGCCTCCTNCACTGGTAATTAAGGATGGCGTTGTAGTCGATGGCTGCAGGGGAAAAGGATCTTTGGAGAAAGACAGACACACACACACACAAAACAAA]




>consensus_2148#1
CAGGTAAAGTATCATTTACTCATCCTCCTCCTCCACACTACATTAAAGCAAAACATTCCT
CAGCAACAGGCAACAAAAAAGGCGCAAAAACGTACAACATTGTATAATCTCGATTCTTAC
CCGGGATCTCTGCATAAAATTAGTTAAAAGGCACGCCTCCTNCACTGGTAATTAAGGATG
GCGTTGTAGTCGATGGCTGCAGGGGAAAAGGATCTTTGGAGAAAGACAGACACACACACA
CACAAAACAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2148#0      GCAGAATTCCGCACGAGTGGGGAAGAGAATGGGAATTAGGACGGTACAAGAAACAAACTA 60
consensus_2148#1      ------------------------------------------------------------
                                                                                  

consensus_2148#0      AAATTAAAGCGAGTTGTGCGAGTGGGTGTGAGTGTGTGTATCTGATGAACTGAACAGAGA 120
consensus_2148#1      ----------------------------------------------------CAGGTAAA 8
                                                                           *   * *

consensus_2148#0      GTATCATT-ACTCATCCTCCTCCTCCAACCAACCTACATTTAAAGCAAAACATTCCTCAG 179
consensus_2148#1      GTATCATTTACTCATCCTCCTCCTCCA--CA--CTACATT-AAAGCAAAACATTCCTCAG 63
                      ******** ******************  **  ******* *******************

consensus_2148#0      CAACAGCAACAAAAAAAGGCGCAAAAACGTACAACATTGTATAATCTCGATTTCTTACCC 239
consensus_2148#1      CAACAGGCAACAAAAAAGGCGCAAAAACGTACAACATTGTATAATCTCGATT-CTTACCC 122
                      ******  *  ***************************************** *******

consensus_2148#0      GGGATCTCTGCATAA--TTAGT---AAGGCACGCTC---TCACTG-TAATTAAGGATGGC 290
consensus_2148#1      GGGATCTCTGCATAAAATTAGTTAAAAGGCACGCCTCCTNCACTGGTAATTAAGGATGGC 182
                      ***************  *****   *********      ***** **************

consensus_2148#0      GTCGTAGGTCGATGGCTGCAAGG-AAAAGGATCTTTGGAGAAAAGGACAGGACACCACNN 349
consensus_2148#1      GTTGTAG-TCGATGGCTGCAGGGGAAAAGGATCTTTGGAGAAA--GACAG-ACAC-ACAC 237
                      ** **** ************ ** *******************  ***** **** **  

consensus_2148#0      ACACACAAAACACACACNATTCAGTCAGAGGCATCGANATCGNACGAAGTCGCAGTCCAC 409
consensus_2148#1      ACACACAAAACAAA---------------------------------------------- 251
                      ************ *                                              

consensus_2148#0      CTCTAACCACGGGCAACCTATAGCTGGGAACATACCGAGCAATAAGATCACTTTCAACAG 469
consensus_2148#1      ------------------------------------------------------------
                                                                                  

consensus_2148#0      GCCCAAATTGTTGAAANAGCCATTTTCCAGGGCGGGTAACGCCNAGTACCTTCCTGTAAG 529
consensus_2148#1      ------------------------------------------------------------
                                                                                  

consensus_2148#0      CGGCGAGCCCGAAACNNACGAGCAGAGGGGCATTCCACGAATTGGTTAGAANAGCCTNAT 589
consensus_2148#1      ------------------------------------------------------------
                                                                                  

consensus_2148#0      TCCACGAGGAGCGAAGCGACCGGCACGGCGANCGGGCCAACAAGCAGGAGGGANCAGCGG 649
consensus_2148#1      ------------------------------------------------------------
                                                                                  

consensus_2148#0      GNCAGGTTGAATAGACCGGCAAAGGGCGCTTCCACG 685
consensus_2148#1      ------------------------------------