cluster # 2188

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Anopheles gambiae
cluster # 2188 cluster # 2188 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2188#0 length = 557 sequences # 1

consensus_2188#1 length = 309 sequences # 1

consensusID : consensus_2188#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 557
fasta sequence

                              [GCCCGAGGTTACACGAACGTACCGCCATCTGTTCTACGAACGANGAGGATTTGTTCTTCACTCCTTTTTGCCTTACTATTACTCAATCCGAGGAAAGTGCAAAGATGGTTTCACCTACGTGTCCTACATCAACGGGGGCCATTCGCCTTGGAGCTTATACGATTATTTGAAGTACTGGTGTTCCCAGGTTCTAACTGCCGGTGGACTTTGCCCCTGGATCTGTGGCCGAATGCGGACGGCTTTCGCCTGGGTATGCTACCGTACGATTGGGCGGTTTCATCTTCAGCAGGACGAATAGATAGATCGGACCCGAAGCACAGGAGAGTGGTCGACCTATCGCAAATATCGCCACATCAATCAACCCAGCAAACAGTTCACTAGTTTCAGTTNNNTACTCTTATATTCGTTCCATCGTCCGGGTAGATTTTGAAACTCTTCCATCGTTTNNCCATCGATTGTCGATNGTGTCCTCCCAACGAGATATGCATTCTGCTACACCCTCCTCTACTATTACCTTCCGCAAAGTTTAACGTATCCTCAGATACAAACACACGCAC]

[+] EMBL AL696451             [GCCCGAGGTTACACGAACGTACCGCCATCTGTTCTACGAACGANGAGGATTTGTTCTTCACTCCTTTTTGCCTTACTATTACTCAATCCGAGGAAAGTGCAAAGATGGTTTCACCTACGTGTCCTACATCAACGGGGGCCATTCGCCTTGGAGCTTATACGATTATTTGAAGTACTGGTGTTCCCAGGTTCTAACTGCCGGTGGACTTTGCCCCTGGATCTGTGGCCGAATGCGGACGGCTTTCGCCTGGGTATGCTACCGTACGATTGGGCGGTTTCATCTTCAGCAGGACGAATAGATAGATCGGACCCGAAGCACAGGAGAGTGGTCGACCTATCGCAAATATCGCCACATCAATCAACCCAGCAAACAGTTCACTAGTTTCAGTTNNNTACTCTTATATTCGTTCCATCGTCCGGGTAGATTTTGAAACTCTTCCATCGTTTNNCCATCGATTGTCGATNGTGTCCTCCCAACGAGATATGCATTCTGCTACACCCTCCTCTACTATTACCTTCCGCAAAGTTTAACGTATCCTCAGATACAAACACACGCAC]




>consensus_2188#0
GCCCGAGGTTACACGAACGTACCGCCATCTGTTCTACGAACGANGAGGATTTGTTCTTCA
CTCCTTTTTGCCTTACTATTACTCAATCCGAGGAAAGTGCAAAGATGGTTTCACCTACGT
GTCCTACATCAACGGGGGCCATTCGCCTTGGAGCTTATACGATTATTTGAAGTACTGGTG
TTCCCAGGTTCTAACTGCCGGTGGACTTTGCCCCTGGATCTGTGGCCGAATGCGGACGGC
TTTCGCCTGGGTATGCTACCGTACGATTGGGCGGTTTCATCTTCAGCAGGACGAATAGAT
AGATCGGACCCGAAGCACAGGAGAGTGGTCGACCTATCGCAAATATCGCCACATCAATCA
ACCCAGCAAACAGTTCACTAGTTTCAGTTNNNTACTCTTATATTCGTTCCATCGTCCGGG
TAGATTTTGAAACTCTTCCATCGTTTNNCCATCGATTGTCGATNGTGTCCTCCCAACGAG
ATATGCATTCTGCTACACCCTCCTCTACTATTACCTTCCGCAAAGTTTAACGTATCCTCA
GATACAAACACACGCAC

consensusID : consensus_2188#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 309
fasta sequence

                              [GTTTAACGTATCCTCAGCATACAAACACACGCACACATACTATTACAGTCGACAGCATTTTCACGTGCATCGAGATCGTTTTATCGCAAGTGTTCATTCAACTGCGATCGCGATGTTTGTCTGCACACGAACAAGCGCAAACACATCCATTTAGCGAACATGCACAAGTAGTTGGCCATCCTTTTTTGTTAAATTAGGTTTAACAGGCTACGTTCGGAATGAAGGAACCGCAAATTGTGATGCGATTGTATGTTCTTTTGTCAGTACGCAAGTAGAAACCAAACGCCCGCAAGTGGTCTCGTTGTCATA]

[+] EMBL BM608595             [GTTTAACGTATCCTCAGCATACAAACACACGCACACATACTATTACAGTCGACAGCATTTTCACGTGCATCGAGATCGTTTTATCGCAAGTGTTCATTCAACTGCGATCGCGATGTTTGTCTGCACACGAACAAGCGCAAACACATCCATTTAGCGAACATGCACAAGTAGTTGGCCATCCTTTTTTGTTAAATTAGGTTTAACAGGCTACGTTCGGAATGAAGGAACCGCAAATTGTGATGCGATTGTATGTTCTTTTGTCAGTACGCAAGTAGAAACCAAACGCCCGCAAGTGGTCTCGTTGTCATA]




>consensus_2188#1
GTTTAACGTATCCTCAGCATACAAACACACGCACACATACTATTACAGTCGACAGCATTT
TCACGTGCATCGAGATCGTTTTATCGCAAGTGTTCATTCAACTGCGATCGCGATGTTTGT
CTGCACACGAACAAGCGCAAACACATCCATTTAGCGAACATGCACAAGTAGTTGGCCATC
CTTTTTTGTTAAATTAGGTTTAACAGGCTACGTTCGGAATGAAGGAACCGCAAATTGTGA
TGCGATTGTATGTTCTTTTGTCAGTACGCAAGTAGAAACCAAACGCCCGCAAGTGGTCTC
GTTGTCATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2188#0      GCCCGAGGTTACACGAACGTACCGCCATCTGTTCTACGAACGANGAGGATTTGTTCTTCA 60
consensus_2188#1      ------------------------------------------------------------
                                                                                  

consensus_2188#0      CTCCTTTTTGCCTTACTATTACTCAATCCGAGGAAAGTGCAA-AGATGGTTTCACCTACG 119
consensus_2188#1      -------------------------GTTTAACGTATCCTCAGCATACAAACACACGCACA 35
                                                *   * * *    **  * *      ***  ** 

consensus_2188#0      TGTCCTACATCAACGGGGGCCATTCGCCTTGGAGCTTATACGATTATTTGAAGTACTGGT 179
consensus_2188#1      CATACTATTACAGTCGACAGCATTTTCACGTGCATCGA---GATCGTTTTAT-CGCAAGT 91
                        * ***   **   *    ****  *    *     *   ***  *** *    *  **

consensus_2188#0      GTTCCCAGGTTCTAACTGCCGGTGGACTTTGCCCCTGGATCTGTGGCCGAATGCGGACGG 239
consensus_2188#1      GTTCA-----TTCAACTGCGATCGCGATGTTTGTCTGCA--CACGAACAAGCGCAAACA- 143
                      ****      *  ******    *   * *    *** *     *  * *  **  **  

consensus_2188#0      CTTTCGCCTGGGTATGCTACCGTACGATTGGGCGGTTTCATCTTCAGCAGGACGAATAGA 299
consensus_2188#1      CATCCATTTAGCGAACATGCACAAGTAGTTGGCCATCCTTTTTTGTTAAATTAGGTTTAA 203
                      * * *   * *  *   * *   *  * * ***  *    * **    *    *  *  *

consensus_2188#0      TAGATCGGACCCGAAGCACAGGAGAGTGGTCGACCTATCGCAAATATCGCCACATCAATC 359
consensus_2188#1      CAGGCTACGTTCGGAATGAAGGA-------------ACCGCAAATTGTGATGCGATTGTA 250
                       **        ** *    ****             * *******   *   *     * 

consensus_2188#0      AACCCAGCAAACAGTTCACTAGTTTCAGTTNNNTACTCTTATATTCGTTCCATCGTCCGG 419
consensus_2188#1      TGTTCTTTTGTCAGTACGCAAGTAGAAACCAAACGCCCGCA-AGTGGTCTCGTTGTCATA 309
                          *      **** * * ***   *        * *  * * * **  * * ***   

consensus_2188#0      GTAGATTTTGAAACTCTTCCATCGTTTNNCCATCGATTGTCGATNGTGTCCTCCCAACGA 479
consensus_2188#1      ------------------------------------------------------------
                                                                                  

consensus_2188#0      GATATGCATTCTGCTACACCCTCCTCTACTATTACCTTCCGCAAAGTTTAACGTATCCTC 539
consensus_2188#1      ------------------------------------------------------------
                                                                                  

consensus_2188#0      AGATACAAACACACGCAC 557
consensus_2188#1      ------------------