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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2207#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 755 fasta sequence
[TCTAGCAGAATCCCGAGGTTATAAACGCAAGCCTCATCAATGGTACGCGAAGGGTGTTTACTTCTTTAACTACTTCGTGCAGCGGCAAACTATTCGCGTGCAGCAACCCATCCAGTCGTTCTGGACGTTCCAGCACCAGGCAACCATTTCCTTGCGCTCAACTACGGCTGCGGTAGTAAGTTCTTCCAGTGGAACCCACAGGACCTGAGTGTTCGTGGGACTGTTCAAGGCGCACACGGGATACGGTTTTNTGAGTGGCAAACGTGTGTGTTGCCGCANGATGAGAAGCTTTATCTAGTAACGCGATCGTGCGACCGAACGNGATGAGCACTGCAATGTGACGGGGCTTGTCCGATATGGGGAGTTACCANCGACTATTCGCTGGGAGTTGGTGAANGCCATAGACCGGATAAGGATACTGATAGACTATGTTTTGTAGATCCCTTCCACCCAGGTGGGACGGTTCTACAGTTCTTGGGAGCGCACGTACCGTGCCTGGAAGTATGATTGTTGACTTGGTAAGGGTTCAGNGAANGAATTGGGGACCTTGTCAACCGCAATCTTTTGAAGGCAAGCAACGCTTTGTACCCGAGGCTTCACTAGGCCGGTTTGGACTGGCTTTTGGGCCGATGGGAAACCGAATTGNAGGGTACTGTACTAGAGACCGGACAGGGAACCAATCAATCNCCCTCAAGNGCACAAAAAGGTTCACCACCGATGGAATACACACNTCACGTAAATACATGGCGCCNANG]
[+] EMBL AL696516 [TCTAGCAGAATCCCGAGGTTATAAACGCAAGCCTCATCAATGGTACGCGAAGGGTGTTTACTTCTTTAACTACTTCGTGCAGCGGCAAACTATTCGCGTGCAGCAACCCATCCAGTCGTTCTGGACGTTCCAGCACCAGGCAACCATTTCCTTGCGCTCAACTACGGCTGCGGTAGTAAGTTCTTCCAGTGGAACCCACAGGACCTGAGTGTTCGTGGGACTGTTCAAGGCGCACACGGGATACGGTTTTNTGAGTGGCAAACGTGTGTGTTGCCGCANGATGAGAAGCTTTATCTAGTAACGCGATCGTGCGACCGAACGNGATGAGCACTGCAATGTGACGGGGCTTGTCCGATATGGGGAGTTACCANCGACTATTCGCTGGGAGTTGGTGAANGCCATAGACCGGATAAGGATACTGATAGACTATGTTTTGTAGATCCCTTCCACCCAGGTGGGACGGTTCTACAGTTCTTGGGAGCGCACGTACCGTGCCTGGAAGTATGATTGTTGACTTGGTAAGGGTTCAGNGAANGAATTGGGGACCTTGTCAACCGCAATCTTTTGAAGGCAAGCAACGCTTTGTACCCGAGGCTTCACTAGGCCGGTTTGGACTGGCTTTTGGGCCGATGGGAAACCGAATTGNAGGGTACTGTACTAGAGACCGGACAGGGAACCAATCAATCNCCCTCAAGNGCACAAAAAGGTTCACCACCGATGGAATACACACNTCACGTAAATACATGGCGCCNANG]
consensusID : consensus_2207#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence
[CAGGACCGAGTGTTCGTGGGACTGTTCAAGGCGCACACGGGATACGTTTTTGAGTGGCAAACTGTGGCTGCGCAGGATGAGAAGCTTTATCTAGTAACGCGATCGGCACCGACGGATGAGCAGTGCAATGTGACGGGGCTGGCGATATGGGAGTTCCAGGGACTTTCGCTGGAGCTGGTGAAGGCCATGCCGGATAAGGATACCGATAGCTTGTTTGTAGATCCTTCCACCAGTGGACGGTTCTACGTCTTGGAGCGCACGACCGTGCTCGAGTATGATGTGACTGGTAAGGTGCAGGAAGAATGGGACCTGTCACGCATCTTTGAAGCAGCAAGCTTTGTACCGAGCTCACTTGGTGTTGGACTGGCTTTGGCCGATGGGAAACGAATTGCGGTTCTGTCTAGAGCCGAAGGCACCATCAAACCCTCACGCTCCAAGCGCTCACACGATGATCCACTCGTAAATCTGGCCCTGTTCGCCTCCCCCCATAACGGTGTACAATCAAATGCAAAGGAACAGCTCGTACTACCGCACGGATGA]
[+] EMBL BX603437 [CAGGACCGAGTGTTCGTGGGACTGTTCAAGGCGCACACGGGATACGTTTTTGAGTGGCAAACTGTGGCTGCGCAGGATGAGAAGCTTTATCTAGTAACGCGATCGGCACCGACGGATGAGCAGTGCAATGTGACGGGGCTGGCGATATGGGAGTTCCAGGGACTTTCGCTGGAGCTGGTGAAGGCCATGCCGGATAAGGATACCGATAGCTTGTTTGTAGATCCTTCCACCAGTGGACGGTTCTACGTCTTGGAGCGCACGACCGTGCTCGAGTATGATGTGACTGGTAAGGTGCAGGAAGAATGGGACCTGTCACGCATCTTTGAAGCAGCAAGCTTTGTACCGAGCTCACTTGGTGTTGGACTGGCTTTGGCCGATGGGAAACGAATTGCGGTTCTGTCTAGAGCCGAAGGCACCATCAAACCCTCACGCTCCAAGCGCTCACACGATGATCCACTCGTAAATCTGGCCCTGTTCGCCTCCCCCCATAACGGTGTACAATCAAATGCAAAGGAACAGCTCGTACTACCGCACGGATGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2207#0 TCTAGCAGAATCCCGAGGTTATAAACGCAAGCCTCATCAATGGTACGCGAAGGGTGTTTA 60
consensus_2207#1 ------------------------------------------------------------
consensus_2207#0 CTTCTTTAACTACTTCGTGCAGCGGCAAACTATTCGCGTGCAGCAACCCATCCAGTCGTT 120
consensus_2207#1 ------------------------------------------------------------
consensus_2207#0 CTGGACGTTCCAGCACCAGGCAACCATTTCCTTGCGCTCAACTACGGCTGCGGTAGTAAG 180
consensus_2207#1 ------------------------------------------------------------
consensus_2207#0 TTCTTCCAGTGGAACCCACAGGACCTGAGTGTTCGTGGGACTGTTCAAGGCGCACACGGG 240
consensus_2207#1 ------------------CAGGACC-GAGTGTTCGTGGGACTGTTCAAGGCGCACACGGG 41
******* **********************************
consensus_2207#0 ATACGGTTTTNTGAGTGGCAAACGTGTGTGTTGCCGCANGATGAGAAGCTTTATCTAGTA 300
consensus_2207#1 ATACG--TTTTTGAGTGGCAAAC---TGTGGCTGCGCAGGATGAGAAGCTTTATCTAGTA 96
***** *** ************ **** **** *********************
consensus_2207#0 ACGCGATCGTGCGACCGAACGNGATGAGCACTGCAATGTGACGGGGCTTGTCCGATATGG 360
consensus_2207#1 ACGCGATCG-GC-ACCGA--CGGATGAGCAGTGCAATGTGACGGGGCTGG--CGATATGG 150
********* ** ***** ******** ***************** * ********
consensus_2207#0 GGAGTTACCANCGACTATTCGCTGGGAGTTGGTGAANGCCATAGACCGGATAAGGATACT 420
consensus_2207#1 G-AGTT-CCAGGGACT-TTCGCTGG-AGCTGGTGAAGGCCATG--CCGGATAAGGATACC 204
* **** *** **** ******** ** ******* ***** **************
consensus_2207#0 GATAGACTATGTTTTGTAGATCCCTTCCACCCAGGTGGGACGGTTCTACAGTTCTTGGGA 480
consensus_2207#1 GATAGCTTGT---TTGTAGATCC-TTCCACC--AGTGG-ACGGTTCTACG--TCTTGG-A 254
***** * * ********** ******* **** ********** ****** *
consensus_2207#0 GCGCACGTACCGTGCCTGGAAGTATGATTGTTGACTTGGTAAGGGTTCAGNGAANGAATT 540
consensus_2207#1 GCGCACG-ACCGTGCTCG--AGTATGAT--GTGACT-GGTAAGG---TGCAGGAAGAAT- 304
******* ******* * ******** ***** ******* * * ****
consensus_2207#0 GGGGACCTTGTCAACCGCAATCTTTTGAAGGCAAGCAACGCTTTGTACCCGAGGCTTCAC 600
consensus_2207#1 -GGGACCT-GTCA--CGCA--TCTTTGAAGC--AGCAA-GCTTTGTACC---GAGCTCAC 352
******* **** **** ******* ***** ********** * ****
consensus_2207#0 TAGGCCGGTTTGGACTGGCTTTTGGGCCGATGGGAAACCGAATTGNAGGGTACTGTACTA 660
consensus_2207#1 TTGGTG---TTGGACTGGCTTT--GGCCGATGGGAAAC-GAATTGC--GGTTCTGT-CTA 403
* ** ************* ************** ****** *** **** ***
consensus_2207#0 GAGACCGGACAGGGAACCAATCAATCNCCCTC-AAGNGC--ACAAAAAGGTTCAC-CACC 716
consensus_2207#1 GAG-CCGAAGGCACCATCAAACCCTCACGCTCCAAGCGCTCACACGATGATCCACTCGTA 462
*** *** * * *** * ** * *** *** ** *** * * * *** *
consensus_2207#0 GATGGAA---TACACACNTCACGTAAATACATGGCGCCNANG------------------ 755
consensus_2207#1 AATCTGGCCCTGTTCGCCTCCCCCCATAACGGTGTACAATCAAATGCAAAGGAACAGCTC 522
** * * * ** * * ** * *
consensus_2207#0 ------------------
consensus_2207#1 GTACTACCGCACGGATGA 540
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||