cluster # 2208

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Anopheles gambiae
cluster # 2208 cluster # 2208 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2208#0 length = 626 sequences # 1

consensus_2208#1 length = 363 sequences # 1

consensusID : consensus_2208#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 626
fasta sequence

                              [CCGCACGAAGGTGGAATCGCTGCGCAAGGAAGCAATGGTGCTGCGCGACAAGAAGGACTTTCTGGCCATGTCGGTGGATCTGCTCAAGAACAACGAATACCTGTCCGGACTAAATGAGAATGAGCGTGAAGAGATTGACTGTTACGTGCAGCGGATCAGCAGCCGGCTCGGTACGGTCGAGCTGAACGTGTGCACGGTGCGCGACCAGGCGCAGGAAGATTCGCTGCACCACGTCAACAGCCTGATCGATCTGATCATCGCGAGCGCCGACCCGGTAATTTCGCGCCAAAAGTGCCAACAGTATCTGAACGCGTGCAGCACCACCGACACGAGCGTGTACACGGACGTCGACCCGCACACGGTCTGTACGGACAAAAAGTTCGAGAGCGTCCTGCTCGGCTGCACGCTCGACGATCAGAAGACGATCAAGAAGCGGCTGCAGGCGCTGCTGGTCTACCTGACCCAGCAAACGATCGTCCACTGAAGGAAGAAGAATAAGGGACATGTTGGGACCGTGACCGAAACGCAAATTGGGAGGGGGGAAGGAGGATAAGAAACACAGCAGCGCATGGGCGCATAGCATATGGTACAACGGGTTGGGAATTCCGGTCAGGCATACCTCGTTA]

[+] EMBL BM614262             [CCGCACGAAGGTGGAATCGCTGCGCAAGGAAGCAATGGTGCTGCGCGACAAGAAGGACTTTCTGGCCATGTCGGTGGATCTGCTCAAGAACAACGAATACCTGTCCGGACTAAATGAGAATGAGCGTGAAGAGATTGACTGTTACGTGCAGCGGATCAGCAGCCGGCTCGGTACGGTCGAGCTGAACGTGTGCACGGTGCGCGACCAGGCGCAGGAAGATTCGCTGCACCACGTCAACAGCCTGATCGATCTGATCATCGCGAGCGCCGACCCGGTAATTTCGCGCCAAAAGTGCCAACAGTATCTGAACGCGTGCAGCACCACCGACACGAGCGTGTACACGGACGTCGACCCGCACACGGTCTGTACGGACAAAAAGTTCGAGAGCGTCCTGCTCGGCTGCACGCTCGACGATCAGAAGACGATCAAGAAGCGGCTGCAGGCGCTGCTGGTCTACCTGACCCAGCAAACGATCGTCCACTGAAGGAAGAAGAATAAGGGACATGTTGGGACCGTGACCGAAACGCAAATTGGGAGGGGGGAAGGAGGATAAGAAACACAGCAGCGCATGGGCGCATAGCATATGGTACAACGGGTTGGGAATTCCGGTCAGGCATACCTCGTTA]




>consensus_2208#0
CCGCACGAAGGTGGAATCGCTGCGCAAGGAAGCAATGGTGCTGCGCGACAAGAAGGACTT
TCTGGCCATGTCGGTGGATCTGCTCAAGAACAACGAATACCTGTCCGGACTAAATGAGAA
TGAGCGTGAAGAGATTGACTGTTACGTGCAGCGGATCAGCAGCCGGCTCGGTACGGTCGA
GCTGAACGTGTGCACGGTGCGCGACCAGGCGCAGGAAGATTCGCTGCACCACGTCAACAG
CCTGATCGATCTGATCATCGCGAGCGCCGACCCGGTAATTTCGCGCCAAAAGTGCCAACA
GTATCTGAACGCGTGCAGCACCACCGACACGAGCGTGTACACGGACGTCGACCCGCACAC
GGTCTGTACGGACAAAAAGTTCGAGAGCGTCCTGCTCGGCTGCACGCTCGACGATCAGAA
GACGATCAAGAAGCGGCTGCAGGCGCTGCTGGTCTACCTGACCCAGCAAACGATCGTCCA
CTGAAGGAAGAAGAATAAGGGACATGTTGGGACCGTGACCGAAACGCAAATTGGGAGGGG
GGAAGGAGGATAAGAAACACAGCAGCGCATGGGCGCATAGCATATGGTACAACGGGTTGG
GAATTCCGGTCAGGCATACCTCGTTA

consensusID : consensus_2208#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 363
fasta sequence

                              [CGACCCACGCGTCCGCGGACGCGTGGGCGGCGAACGAAGAAAACGGTGCGTGCACCTTCAGCGTGAAAACAGAAACAGCCTGATCGATCTGATCATCGCGAGCGCCGACCCGGTAATTTCGCGCCAAAAGTGCCAACAGTATCTGAACGCGTGCAGCACCACCGGACACGAGCGTGTACACGGACGTCGACCCGCACACGGTCTGTACGGGACAAAAAGTTCGAGAGCGTCCTGCTCGGCTGCACGCTCGACGATCAGAAGACGATCAAGAAGCGGCTGCAGGCGCTGCTGGTCTACCTTACCCAGCAAACGATCGTCCACTGAAGGAACAAGAAGAAAGGACATGCTGGGACCGTGACCGAA]

[+] EMBL BM599487             [CGACCCACGCGTCCGCGGACGCGTGGGCGGCGAACGAAGAAAACGGTGCGTGCACCTTCAGCGTGAAAACAGAAACAGCCTGATCGATCTGATCATCGCGAGCGCCGACCCGGTAATTTCGCGCCAAAAGTGCCAACAGTATCTGAACGCGTGCAGCACCACCGGACACGAGCGTGTACACGGACGTCGACCCGCACACGGTCTGTACGGGACAAAAAGTTCGAGAGCGTCCTGCTCGGCTGCACGCTCGACGATCAGAAGACGATCAAGAAGCGGCTGCAGGCGCTGCTGGTCTACCTTACCCAGCAAACGATCGTCCACTGAAGGAACAAGAAGAAAGGACATGCTGGGACCGTGACCGAA]




>consensus_2208#1
CGACCCACGCGTCCGCGGACGCGTGGGCGGCGAACGAAGAAAACGGTGCGTGCACCTTCA
GCGTGAAAACAGAAACAGCCTGATCGATCTGATCATCGCGAGCGCCGACCCGGTAATTTC
GCGCCAAAAGTGCCAACAGTATCTGAACGCGTGCAGCACCACCGGACACGAGCGTGTACA
CGGACGTCGACCCGCACACGGTCTGTACGGGACAAAAAGTTCGAGAGCGTCCTGCTCGGC
TGCACGCTCGACGATCAGAAGACGATCAAGAAGCGGCTGCAGGCGCTGCTGGTCTACCTT
ACCCAGCAAACGATCGTCCACTGAAGGAACAAGAAGAAAGGACATGCTGGGACCGTGACC
GAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2208#0      CCGCACGAAGGTGGAATCGCTGCGCAAGGAAGCAATGGTGCTGCGCGACAAGAAGGACTT 60
consensus_2208#1      ------------------------------------------------------------
                                                                                  

consensus_2208#0      TCTGGCCATGTCGGTGGATCTGCTCAAGAACAACGAATACCTGTCCGGACTAAATGAGAA 120
consensus_2208#1      ------------------------------------------------------------
                                                                                  

consensus_2208#0      TGAGCGTGAAGAGATTGACTGTTACGTGCAGCGGATCAGCAGCCGGCTCGGTACGGTCGA 180
consensus_2208#1      -------------------------------------------CGACCCA-CGCGTCCG- 15
                                                                 ** * *    **  ** 

consensus_2208#0      GCTGAACGTGTGCACGGTGCGCGACCA----GGCGCAGGAAGATTCGCTGC-ACCACGTC 235
consensus_2208#1      --CGGACGCGTGGGCGGCGAACGAAGAAAACGGTGCGTGCACCTTCAGCGTGAAAACAGA 73
                         * *** ***  *** *  ***  *    ** **  * *  ***   *  *  **   

consensus_2208#0      AACAGCCTGATCGATCTGATCATCGCGAGCGCCGACCCGGTAATTTCGCGCCAAAAGTGC 295
consensus_2208#1      AACAGCCTGATCGATCTGATCATCGCGAGCGCCGACCCGGTAATTTCGCGCCAAAAGTGC 133
                      ************************************************************

consensus_2208#0      CAACAGTATCTGAACGCGTGCAGCACCACCG-ACACGAGCGTGTACACGGACGTCGACCC 354
consensus_2208#1      CAACAGTATCTGAACGCGTGCAGCACCACCGGACACGAGCGTGTACACGGACGTCGACCC 193
                      ******************************* ****************************

consensus_2208#0      GCACACGGTCTGTACGG-ACAAAAAGTTCGAGAGCGTCCTGCTCGGCTGCACGCTCGACG 413
consensus_2208#1      GCACACGGTCTGTACGGGACAAAAAGTTCGAGAGCGTCCTGCTCGGCTGCACGCTCGACG 253
                      ***************** ******************************************

consensus_2208#0      ATCAGAAGACGATCAAGAAGCGGCTGCAGGCGCTGCTGGTCTACCTGACCCAGCAAACGA 473
consensus_2208#1      ATCAGAAGACGATCAAGAAGCGGCTGCAGGCGCTGCTGGTCTACCTTACCCAGCAAACGA 313
                      ********************************************** *************

consensus_2208#0      TCGTCCACTGAAGGAAGAAGAATAAGGGACATGTTGGGACCGTGACCGAAACGCAAATTG 533
consensus_2208#1      TCGTCCACTGAAGGAACAAGAAGAAAGGACATGCTGGGACCGTGACCGAA---------- 363
                      **************** ***** ** ******* ****************          

consensus_2208#0      GGAGGGGGGAAGGAGGATAAGAAACACAGCAGCGCATGGGCGCATAGCATATGGTACAAC 593
consensus_2208#1      ------------------------------------------------------------
                                                                                  

consensus_2208#0      GGGTTGGGAATTCCGGTCAGGCATACCTCGTTA 626
consensus_2208#1      ---------------------------------