cluster # 2215

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Anopheles gambiae
cluster # 2215 cluster # 2215 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2215#0 length = 803 sequences # 1

consensus_2215#1 length = 621 sequences # 1

consensusID : consensus_2215#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 803
fasta sequence

                              [TGCTCGAGGCAGAATTGCCACGAGGTTCAAACTTATTGTGCAAAAATCCCGCTTCTCGTAGTGTTAGTCGTTCCATTTGCACTGCACGCTCCACCACAGTATGTCCGAGAGCCGCGATAGCAACGTTGTCGCAAAACGTCCAGCCCGTACACCAAGCAGGATCTGAAGAATGCCATCAACCTGATCGTTGAACGCGGTACCTCGATTCGACCGTGCTGCATTCGTGTGCAACGTTCCGGCAACACCTGTCACTACTTTGCAAAGGTCNGCGTGAAGCCACAGGGNACAAAAAATCAGNCACAGGCCTGTATTGCCGGCCANGGAAACGAANGCAAGCACCTTGTACCCACGTGGGACTTGCACCGGGACCTTGCTTGCAAAAGACNGCCGGATTCNTCGGATACNAAGCAAGCGCCAACCGGTGGAACGAACGGGACAGGNCCCGGAAAAGAGCAACTGGGGTTGCCNAGCAAAGGAAACAGGTCACCCGGGGCACCGGGATCCGTAAGACNCCCATTTCCNAAGNGGAACCANCGGGGAAGGCTANTCGGGGAACAGGCATCGGCTGGTAACCCCACGGAAACAGNTTACCGGTTGNCCCGNAACGAATTAGGGGGCATACTTCCGACACCTNATGGGAATCCNGACCAGGNTCNACANNGGCAAANCANCGGCCAACAGGCCATTCCTTCCGGGGGAAACCACAATACCAATTGGAGCNGACCCTGGGGCGTTGATTTCCTGNACACACAATTCCGACACCACAAAGCTTAAATTCCTTGGCAAACCCGACAGCAGGCCGG]

[+] EMBL AL696552             [TGCTCGAGGCAGAATTGCCACGAGGTTCAAACTTATTGTGCAAAAATCCCGCTTCTCGTAGTGTTAGTCGTTCCATTTGCACTGCACGCTCCACCACAGTATGTCCGAGAGCCGCGATAGCAACGTTGTCGCAAAACGTCCAGCCCGTACACCAAGCAGGATCTGAAGAATGCCATCAACCTGATCGTTGAACGCGGTACCTCGATTCGACCGTGCTGCATTCGTGTGCAACGTTCCGGCAACACCTGTCACTACTTTGCAAAGGTCNGCGTGAAGCCACAGGGNACAAAAAATCAGNCACAGGCCTGTATTGCCGGCCANGGAAACGAANGCAAGCACCTTGTACCCACGTGGGACTTGCACCGGGACCTTGCTTGCAAAAGACNGCCGGATTCNTCGGATACNAAGCAAGCGCCAACCGGTGGAACGAACGGGACAGGNCCCGGAAAAGAGCAACTGGGGTTGCCNAGCAAAGGAAACAGGTCACCCGGGGCACCGGGATCCGTAAGACNCCCATTTCCNAAGNGGAACCANCGGGGAAGGCTANTCGGGGAACAGGCATCGGCTGGTAACCCCACGGAAACAGNTTACCGGTTGNCCCGNAACGAATTAGGGGGCATACTTCCGACACCTNATGGGAATCCNGACCAGGNTCNACANNGGCAAANCANCGGCCAACAGGCCATTCCTTCCGGGGGAAACCACAATACCAATTGGAGCNGACCCTGGGGCGTTGATTTCCTGNACACACAATTCCGACACCACAAAGCTTAAATTCCTTGGCAAACCCGACAGCAGGCCGG]




>consensus_2215#0
TGCTCGAGGCAGAATTGCCACGAGGTTCAAACTTATTGTGCAAAAATCCCGCTTCTCGTA
GTGTTAGTCGTTCCATTTGCACTGCACGCTCCACCACAGTATGTCCGAGAGCCGCGATAG
CAACGTTGTCGCAAAACGTCCAGCCCGTACACCAAGCAGGATCTGAAGAATGCCATCAAC
CTGATCGTTGAACGCGGTACCTCGATTCGACCGTGCTGCATTCGTGTGCAACGTTCCGGC
AACACCTGTCACTACTTTGCAAAGGTCNGCGTGAAGCCACAGGGNACAAAAAATCAGNCA
CAGGCCTGTATTGCCGGCCANGGAAACGAANGCAAGCACCTTGTACCCACGTGGGACTTG
CACCGGGACCTTGCTTGCAAAAGACNGCCGGATTCNTCGGATACNAAGCAAGCGCCAACC
GGTGGAACGAACGGGACAGGNCCCGGAAAAGAGCAACTGGGGTTGCCNAGCAAAGGAAAC
AGGTCACCCGGGGCACCGGGATCCGTAAGACNCCCATTTCCNAAGNGGAACCANCGGGGA
AGGCTANTCGGGGAACAGGCATCGGCTGGTAACCCCACGGAAACAGNTTACCGGTTGNCC
CGNAACGAATTAGGGGGCATACTTCCGACACCTNATGGGAATCCNGACCAGGNTCNACAN
NGGCAAANCANCGGCCAACAGGCCATTCCTTCCGGGGGAAACCACAATACCAATTGGAGC
NGACCCTGGGGCGTTGATTTCCTGNACACACAATTCCGACACCACAAAGCTTAAATTCCT
TGGCAAACCCGACAGCAGGCCGG

consensusID : consensus_2215#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 621
fasta sequence

                              [CCGGGAGGACGCAAACTTAATTGTGCAAAAATCCCGCTTCCTCGTAGTGTTAGTCGTTTCCATTTTACTGCACGCTCCACCACAGTATGTCCGAGAGCCGCGATAGCAACCGTTGTCGCAAAACGTCCAGCCCGTACACCAAGCAGGATCTGAAGAATGCCATCAACCTGATCGTTGAACGCGGTACCTCGATTCGCCGTGCTGCATTCGTGTGCAACGTTCCGCGCACCACCCTGTCCACCTACTTGAAGTCGCTGAAGCACGGCAAAATCAGCAAGCTGTTGCCGCAGGAAGAGCAAGCACTGTACCAGTGGATGACGGACTGCTGCAAGCGCGGCTTCTCGATCAAGCAGCGCAACGTGGAGACGGCAGCCGAAGCACTGGTGCAGAAGAACGTCCCGGCCCGGTCGCACCCCTTCCAGGACACGGAGTTTGGGCGGCGCTGCTACCAGAAGTTCGTCCGACGATGGCTCTCGATTGATCGCGTCAAGGAGCGCAAGCATCTCGGCACCATTATGGACTGGTATCTGCACATCGAAAGCTATCTGAACGAGGCGAACCTGTTCGACATCCTGAACCATCCGGCCCGCGTCTTCGTGTGCGACGAGCTGCGGTTCCGGG]

[+] EMBL BM610319             [CCGGGAGGACGCAAACTTAATTGTGCAAAAATCCCGCTTCCTCGTAGTGTTAGTCGTTTCCATTTTACTGCACGCTCCACCACAGTATGTCCGAGAGCCGCGATAGCAACCGTTGTCGCAAAACGTCCAGCCCGTACACCAAGCAGGATCTGAAGAATGCCATCAACCTGATCGTTGAACGCGGTACCTCGATTCGCCGTGCTGCATTCGTGTGCAACGTTCCGCGCACCACCCTGTCCACCTACTTGAAGTCGCTGAAGCACGGCAAAATCAGCAAGCTGTTGCCGCAGGAAGAGCAAGCACTGTACCAGTGGATGACGGACTGCTGCAAGCGCGGCTTCTCGATCAAGCAGCGCAACGTGGAGACGGCAGCCGAAGCACTGGTGCAGAAGAACGTCCCGGCCCGGTCGCACCCCTTCCAGGACACGGAGTTTGGGCGGCGCTGCTACCAGAAGTTCGTCCGACGATGGCTCTCGATTGATCGCGTCAAGGAGCGCAAGCATCTCGGCACCATTATGGACTGGTATCTGCACATCGAAAGCTATCTGAACGAGGCGAACCTGTTCGACATCCTGAACCATCCGGCCCGCGTCTTCGTGTGCGACGAGCTGCGGTTCCGGG]




>consensus_2215#1
CCGGGAGGACGCAAACTTAATTGTGCAAAAATCCCGCTTCCTCGTAGTGTTAGTCGTTTC
CATTTTACTGCACGCTCCACCACAGTATGTCCGAGAGCCGCGATAGCAACCGTTGTCGCA
AAACGTCCAGCCCGTACACCAAGCAGGATCTGAAGAATGCCATCAACCTGATCGTTGAAC
GCGGTACCTCGATTCGCCGTGCTGCATTCGTGTGCAACGTTCCGCGCACCACCCTGTCCA
CCTACTTGAAGTCGCTGAAGCACGGCAAAATCAGCAAGCTGTTGCCGCAGGAAGAGCAAG
CACTGTACCAGTGGATGACGGACTGCTGCAAGCGCGGCTTCTCGATCAAGCAGCGCAACG
TGGAGACGGCAGCCGAAGCACTGGTGCAGAAGAACGTCCCGGCCCGGTCGCACCCCTTCC
AGGACACGGAGTTTGGGCGGCGCTGCTACCAGAAGTTCGTCCGACGATGGCTCTCGATTG
ATCGCGTCAAGGAGCGCAAGCATCTCGGCACCATTATGGACTGGTATCTGCACATCGAAA
GCTATCTGAACGAGGCGAACCTGTTCGACATCCTGAACCATCCGGCCCGCGTCTTCGTGT
GCGACGAGCTGCGGTTCCGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2215#0      TGCTCGAGGCAGAATTGCCACGAGGTT-CAAACTTA-TTGTGCAAAAATCCCGCTTC-TC 57
consensus_2215#1      -----------------CCGGGAGGACGCAAACTTAATTGTGCAAAAATCCCGCTTCCTC 43
                                       **  ****   ******** ******************** **

consensus_2215#0      GTAGTGTTAGTCGTTCCATTTGCACTGCACGCTCCACCACAGTATGTCCGAGAGCCGCGA 117
consensus_2215#1      GTAGTGTTAGTCGTTTCCATTTTACTGCACGCTCCACCACAGTATGTCCGAGAGCCGCGA 103
                      *************** *  **  *************************************

consensus_2215#0      TAGCAAC-GTTGTCGCAAAACGTCCAGCCCGTACACCAAGCAGGATCTGAAGAATGCCAT 176
consensus_2215#1      TAGCAACCGTTGTCGCAAAACGTCCAGCCCGTACACCAAGCAGGATCTGAAGAATGCCAT 163
                      ******* ****************************************************

consensus_2215#0      CAACCTGATCGTTGAACGCGGTACCTCGATTCGACCGTGCTGCATTCGTGTGCAACGTTC 236
consensus_2215#1      CAACCTGATCGTTGAACGCGGTACCTCGATTCG-CCGTGCTGCATTCGTGTGCAACGTTC 222
                      ********************************* **************************

consensus_2215#0      CG-GCAACACCTGTCACTACTTTGCAAAGGTCNGCGTGAAGCCACAGGGNACAAAAAATC 295
consensus_2215#1      CGCGCACCACCC-TGTCCACCTACTTGAAGTCGC--TGAAGC---ACGGCA----AAATC 272
                      ** *** ****  *  * ** *     * ***    ******   * ** *    *****

consensus_2215#0      AGNCACAGGCCTGTATTGCCGGCCANGGAAACGAANGCAAGCACCTTGTACCCACGTGGG 355
consensus_2215#1      AG---CAAGC---TGTTGCCG--CAGGAAGA-----GCAAGCAC--TGTACCAGTGGATG 317
                      **   ** **   * ******  ** * * *     ********  ******   *   *

consensus_2215#0      ACTTGCACCGGGACCTTGCTTGCAAAAGACNGCCGGATTCNTCGGATACNAAGCAAGCGC 415
consensus_2215#1      AC--------GGAC--TGCT-GCAA------GCGCGGCTTCTCG---ATCAAGCA-GCGC 356
                      **        ****  **** ****      **  *  *  ***   *  ***** ****

consensus_2215#0      CAACCGGTGGAACGAACGGGACAGGNCCCGGAAAAGAGCAACTGGGGTTGCCNAGCAAAG 475
consensus_2215#1      -AAC--GTGGAGACGGCAGCCGAAGCACTGGTGCAGAAGAAC----GT--CCCGGC---- 403
                       ***  *****     * *   * *  * **   ***  ***    **  **  **    

consensus_2215#0      GAAACAGGTCACCCGGGGCACCGGGATCCGTAAGACNCCCATTTCCNAAGNGGAACCANC 535
consensus_2215#1      ----CCGGTC-------GCACCC---CTTCCAGGACACGGAGTT--TGGGCGGCGCTGCT 447
                          * ****       *****         * *** *  * **     * **  *    

consensus_2215#0      GGGGAAGGCTANTCGGGGAACAGGCATCGGCTGGTAACCCCACGGAAACAGNTTACCGGT 595
consensus_2215#1      ACCAGAAGTTCGTCCGACGATGGCTCTCGATTGATCGCGTCAAGGAGCGCAAGCATCT-C 506
                           * * *  ** *   *  *   ***  ** *  *  ** ***        * *   

consensus_2215#0      TGNCCCGNAACGAATTAGGGGGCATACTTCCGACACCTNATGGGAATCCNGACCAGGNTC 655
consensus_2215#1      GGCACCATTATGGACTGGTATCTGCACATCGAAAGCTATCTGAACGAGGCGAACCTGTTC 566
                       *  **   * * * * *       ** **  *  *    **        ** *  * **

consensus_2215#0      NACANNGGCAAANCANCGGCCAACAGGCCATTCCTTCCGGGGGAAACCACAATACCAATT 715
consensus_2215#1      GACATCC-TGAACCATC---CGGCCCGCGTCTTCGTGTGCGACGAGCTGCGGTTCCGGG- 621
                       ***      ** ** *   *  *  **   * * *  * *   * *  *  * **    

consensus_2215#0      GGAGCNGACCCTGGGGCGTTGATTTCCTGNACACACAATTCCGACACCACAAAGCTTAAA 775
consensus_2215#1      ------------------------------------------------------------
                                                                                  

consensus_2215#0      TTCCTTGGCAAACCCGACAGCAGGCCGG 803
consensus_2215#1      ----------------------------