cluster # 2233

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Anopheles gambiae
cluster # 2233 cluster # 2233 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2233#0 length = 683 sequences # 1

consensus_2233#1 length = 669 sequences # 1

consensusID : consensus_2233#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 683
fasta sequence

                              [CCGGTGCGTTCGGGCTGTAGTGTGTGTGCCGCGTGAAATCATCGTGTGTCGGGTGCCGCTTGTGTAGTGAAAGCGTGCGGCAGTGTGTTGTGTGTGTGTATCTGGTTTTTGTATGTGAGAGCAGCGGGGGAGCTTGGGGCTGTGTGTGAGAGGCGTGGAATTGTGCATCCAAGGAAGTGCGCGTGTGTGAGTGTACATCGTGTAAAGTTCGAGAAATCAATCATATGCATCCTCGAGATCATTTGCATCCTCACCATCGTCGTCGTCAACGTTCAACCAAACCGTAGCCGTCTCTGCAATAAACAAAAAGACCGCCAGCCCGAGAGCGCCTTCGCCCACCCCCACCTCCAAAGTGTGTGTGCGTGAGAGTGTGTATGGGCGGTGGGTCCAACAATCCATCCGAAAACAATAGGAGCACGCACACGCGAACGCGAAACGGGTCGAGGTGTGTGTGTGTGGTGTGTTGAAGGTAGTAAAAAGGTTGTGTGCAAAGTGCGCGAGTGCGCGAGAAAAAGAGAGAGAGAGAAAGAGAGAGAGGACACGAAATAGCTTCACCGCAACAATCCACTAGTAGCAGCGCATCGTCACACACCCGCACACACACACAGCCAACCTACGGCAAAGAGAAAATCTGGTGGGAGCAGCAAAAGAGAGAAAGGGAGAGAGAGGAAGAGAGAAGATCA]

[+] EMBL BM599273             [CCGGTGCGTTCGGGCTGTAGTGTGTGTGCCGCGTGAAATCATCGTGTGTCGGGTGCCGCTTGTGTAGTGAAAGCGTGCGGCAGTGTGTTGTGTGTGTGTATCTGGTTTTTGTATGTGAGAGCAGCGGGGGAGCTTGGGGCTGTGTGTGAGAGGCGTGGAATTGTGCATCCAAGGAAGTGCGCGTGTGTGAGTGTACATCGTGTAAAGTTCGAGAAATCAATCATATGCATCCTCGAGATCATTTGCATCCTCACCATCGTCGTCGTCAACGTTCAACCAAACCGTAGCCGTCTCTGCAATAAACAAAAAGACCGCCAGCCCGAGAGCGCCTTCGCCCACCCCCACCTCCAAAGTGTGTGTGCGTGAGAGTGTGTATGGGCGGTGGGTCCAACAATCCATCCGAAAACAATAGGAGCACGCACACGCGAACGCGAAACGGGTCGAGGTGTGTGTGTGTGGTGTGTTGAAGGTAGTAAAAAGGTTGTGTGCAAAGTGCGCGAGTGCGCGAGAAAAAGAGAGAGAGAGAAAGAGAGAGAGGACACGAAATAGCTTCACCGCAACAATCCACTAGTAGCAGCGCATCGTCACACACCCGCACACACACACAGCCAACCTACGGCAAAGAGAAAATCTGGTGGGAGCAGCAAAAGAGAGAAAGGGAGAGAGAGGAAGAGAGAAGATCA]




>consensus_2233#0
CCGGTGCGTTCGGGCTGTAGTGTGTGTGCCGCGTGAAATCATCGTGTGTCGGGTGCCGCT
TGTGTAGTGAAAGCGTGCGGCAGTGTGTTGTGTGTGTGTATCTGGTTTTTGTATGTGAGA
GCAGCGGGGGAGCTTGGGGCTGTGTGTGAGAGGCGTGGAATTGTGCATCCAAGGAAGTGC
GCGTGTGTGAGTGTACATCGTGTAAAGTTCGAGAAATCAATCATATGCATCCTCGAGATC
ATTTGCATCCTCACCATCGTCGTCGTCAACGTTCAACCAAACCGTAGCCGTCTCTGCAAT
AAACAAAAAGACCGCCAGCCCGAGAGCGCCTTCGCCCACCCCCACCTCCAAAGTGTGTGT
GCGTGAGAGTGTGTATGGGCGGTGGGTCCAACAATCCATCCGAAAACAATAGGAGCACGC
ACACGCGAACGCGAAACGGGTCGAGGTGTGTGTGTGTGGTGTGTTGAAGGTAGTAAAAAG
GTTGTGTGCAAAGTGCGCGAGTGCGCGAGAAAAAGAGAGAGAGAGAAAGAGAGAGAGGAC
ACGAAATAGCTTCACCGCAACAATCCACTAGTAGCAGCGCATCGTCACACACCCGCACAC
ACACACAGCCAACCTACGGCAAAGAGAAAATCTGGTGGGAGCAGCAAAAGAGAGAAAGGG
AGAGAGAGGAAGAGAGAAGATCA

consensusID : consensus_2233#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 669
fasta sequence

                              [CCGGGAGCAGCAAAAGAGAAAAAGACCGCCAGCCCGAGAGCGCCTTCGCCCACCCCCACCTCCAAAGTGTGTGTGCGTGAGAGTGTGTATGGGCGGTGGGTCCAACAATCCATCCGAAAACAATAGGAGCACGCACACGCGAACGCGAAACGGGTCGAGGTGTGTATGTGTGTGTGTTGAAGGTAGTAGAAGGTTGTGTGCAAAGTGCGCGAGTGCGCGAGAGAAAGAGAGAGAGAGGACACGAAATAGCTTCACCGCAACAATCCACTAGTAGCAGCGCATCGTCACACACCCGCACACACACACAGCCAACCTACGGCAAAGAGAAAATCTGGTGGGAGCAGCAAAAGAGAGAAAGAGAGAGAGAGGAAGAGAGAAGATCATGATGTACAGCAACAACAGCAATAGAAAGTGTTTCAAATATGAAGTTACTGATCGTGCAACTCGTGAGCAAAGTTAGTTTAAGTTTAAGCAAACAAAATTGTGTGTGTAAAGTGAAATAATAATAAAAATAATTTAAATTAAAGCAGGAAATATTCAAAGCTAAAGCAGCACAGTGCTTTGGCCGAGACGTACGAATCGCTTCTATCAACATTAGCAAAGTGATAAAAAAGAGAAAAAACAATGGCCGATCACATGGAGGAGCCGCCAATGAAGCGGGCGAAAGTC]

[+] EMBL BM622891             [CCGGGAGCAGCAAAAGAGAAAAAGACCGCCAGCCCGAGAGCGCCTTCGCCCACCCCCACCTCCAAAGTGTGTGTGCGTGAGAGTGTGTATGGGCGGTGGGTCCAACAATCCATCCGAAAACAATAGGAGCACGCACACGCGAACGCGAAACGGGTCGAGGTGTGTATGTGTGTGTGTTGAAGGTAGTAGAAGGTTGTGTGCAAAGTGCGCGAGTGCGCGAGAGAAAGAGAGAGAGAGGACACGAAATAGCTTCACCGCAACAATCCACTAGTAGCAGCGCATCGTCACACACCCGCACACACACACAGCCAACCTACGGCAAAGAGAAAATCTGGTGGGAGCAGCAAAAGAGAGAAAGAGAGAGAGAGGAAGAGAGAAGATCATGATGTACAGCAACAACAGCAATAGAAAGTGTTTCAAATATGAAGTTACTGATCGTGCAACTCGTGAGCAAAGTTAGTTTAAGTTTAAGCAAACAAAATTGTGTGTGTAAAGTGAAATAATAATAAAAATAATTTAAATTAAAGCAGGAAATATTCAAAGCTAAAGCAGCACAGTGCTTTGGCCGAGACGTACGAATCGCTTCTATCAACATTAGCAAAGTGATAAAAAAGAGAAAAAACAATGGCCGATCACATGGAGGAGCCGCCAATGAAGCGGGCGAAAGTC]




>consensus_2233#1
CCGGGAGCAGCAAAAGAGAAAAAGACCGCCAGCCCGAGAGCGCCTTCGCCCACCCCCACC
TCCAAAGTGTGTGTGCGTGAGAGTGTGTATGGGCGGTGGGTCCAACAATCCATCCGAAAA
CAATAGGAGCACGCACACGCGAACGCGAAACGGGTCGAGGTGTGTATGTGTGTGTGTTGA
AGGTAGTAGAAGGTTGTGTGCAAAGTGCGCGAGTGCGCGAGAGAAAGAGAGAGAGAGGAC
ACGAAATAGCTTCACCGCAACAATCCACTAGTAGCAGCGCATCGTCACACACCCGCACAC
ACACACAGCCAACCTACGGCAAAGAGAAAATCTGGTGGGAGCAGCAAAAGAGAGAAAGAG
AGAGAGAGGAAGAGAGAAGATCATGATGTACAGCAACAACAGCAATAGAAAGTGTTTCAA
ATATGAAGTTACTGATCGTGCAACTCGTGAGCAAAGTTAGTTTAAGTTTAAGCAAACAAA
ATTGTGTGTGTAAAGTGAAATAATAATAAAAATAATTTAAATTAAAGCAGGAAATATTCA
AAGCTAAAGCAGCACAGTGCTTTGGCCGAGACGTACGAATCGCTTCTATCAACATTAGCA
AAGTGATAAAAAAGAGAAAAAACAATGGCCGATCACATGGAGGAGCCGCCAATGAAGCGG
GCGAAAGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2233#0      CCGGTGCGTTCGGGCTGTAGTGTGTGTGCCGCGTGAAATCATCGTGTGTCGGGTGCCGCT 60
consensus_2233#1      ------------------------------------------------------------
                                                                                  

consensus_2233#0      TGTGTAGTGAAAGCGTGCGGCAGTGTGTTGTGTGTGTGTATCTGGTTTTTGTATGTGAGA 120
consensus_2233#1      ------------------------------------------------------------
                                                                                  

consensus_2233#0      GCAGCGGGGGAGCTTGGGGCTGTGTGTGAGAGGCGTGGAATTGTGCATCCAAGGAAGTGC 180
consensus_2233#1      ------------------------------------------------------------
                                                                                  

consensus_2233#0      GCGTGTGTGAGTGTACATCGTGTAAAGTTCGAGAAATCAATCATATGCATCCTCGAGATC 240
consensus_2233#1      ------------------------------------------------------------
                                                                                  

consensus_2233#0      ATTTGCATCCTCACCATCGTCGTCGTCAACGTTCAACCAAACCGTAGCCGTCTCTGCAAT 300
consensus_2233#1      ----------------------------------------------CCGGGAGCAGCAAA 14
                                                                     * *   * **** 

consensus_2233#0      AAACAAAAAGACCGCCAGCCCGAGAGCGCCTTCGCCCACCCCCACCTCCAAAGTGTGTGT 360
consensus_2233#1      AGAGAAAAAGACCGCCAGCCCGAGAGCGCCTTCGCCCACCCCCACCTCCAAAGTGTGTGT 74
                      * * ********************************************************

consensus_2233#0      GCGTGAGAGTGTGTATGGGCGGTGGGTCCAACAATCCATCCGAAAACAATAGGAGCACGC 420
consensus_2233#1      GCGTGAGAGTGTGTATGGGCGGTGGGTCCAACAATCCATCCGAAAACAATAGGAGCACGC 134
                      ************************************************************

consensus_2233#0      ACACGCGAACGCGAAACGGGTCGAGGTGTGTGTGTGTGGTGTGTTGAAGGTAGTAAAAAG 480
consensus_2233#1      ACACGCGAACGCGAAACGGGTCGAGGTGTGTATGTGTG-TGTGTTGAAGGTAGTAGAA-G 192
                      ******************************* ****** **************** ** *

consensus_2233#0      GTTGTGTGCAAAGTGCGCGAGTGCGCGAGAAAAAGAGAGAGAGAGAAAGAGAGAGAGGAC 540
consensus_2233#1      GTTGTGTGCAAAGTGCGCGAGTGCGCGAGAGAAAGAGAGAG------------AGAGGAC 240
                      ****************************** **********            *******

consensus_2233#0      ACGAAATAGCTTCACCGCAACAATCCACTAGTAGCAGCGCATCGTCACACACCCGCACAC 600
consensus_2233#1      ACGAAATAGCTTCACCGCAACAATCCACTAGTAGCAGCGCATCGTCACACACCCGCACAC 300
                      ************************************************************

consensus_2233#0      ACACACAGCCAACCTACGGCAAAGAGAAAATCTGGTGGGAGCAGCAAAAGAGAGAAAGGG 660
consensus_2233#1      ACACACAGCCAACCTACGGCAAAGAGAAAATCTGGTGGGAGCAGCAAAAGAGAGAAAGAG 360
                      ********************************************************** *

consensus_2233#0      AGAGAGAGGAAGAGAGAAGATCA------------------------------------- 683
consensus_2233#1      AGAGAGAGGAAGAGAGAAGATCATGATGTACAGCAACAACAGCAATAGAAAGTGTTTCAA 420
                      ***********************                                     

consensus_2233#0      ------------------------------------------------------------
consensus_2233#1      ATATGAAGTTACTGATCGTGCAACTCGTGAGCAAAGTTAGTTTAAGTTTAAGCAAACAAA 480
                                                                                  

consensus_2233#0      ------------------------------------------------------------
consensus_2233#1      ATTGTGTGTGTAAAGTGAAATAATAATAAAAATAATTTAAATTAAAGCAGGAAATATTCA 540
                                                                                  

consensus_2233#0      ------------------------------------------------------------
consensus_2233#1      AAGCTAAAGCAGCACAGTGCTTTGGCCGAGACGTACGAATCGCTTCTATCAACATTAGCA 600
                                                                                  

consensus_2233#0      ------------------------------------------------------------
consensus_2233#1      AAGTGATAAAAAAGAGAAAAAACAATGGCCGATCACATGGAGGAGCCGCCAATGAAGCGG 660
                                                                                  

consensus_2233#0      ---------
consensus_2233#1      GCGAAAGTC 669