cluster # 2234

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Anopheles gambiae
cluster # 2234 cluster # 2234 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2234#0 length = 583 sequences # 1

consensus_2234#1 length = 503 sequences # 1

consensusID : consensus_2234#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 583
fasta sequence

                              [GGGCAAGAATTGGCCCCGCACGGATTATAGGGCCGTGAGCGTGTGGTGGTAGGCCTGGGATACGCTGAAATGAAGGACATTCTCTGCAACGAAGCGTTCCAGGGTCGGCGGACAATTTCTTCATATCGGTTGCGTACATTTGGGAACAAGATTGGGCATCANCTGTACAGATGGATCNTTCTGGAACGAGCAACGCAGCTTCGTCACGCGAAACCTCCGGCCAGAGTGGGCTACCGGAACGGCAAGACGCGATGCACGCACACAGATCCAAAACCCGANAGCTTGGACCGAAACTGGTGGACCGCTTGCCTGGGACAACCGTTGAATGTGCAGCGAAACCGAGTTACCNTTNGGAGGGAGCCCACAAGGGAATAACCCAAGTAACCCCTTTCCAGCGTACCGGCATTNCCCAAGAGAGCGGTNTTTCAACTTNCAACACAACCNGTGTTGGGACTATGGGTAGGGAGGGAAACCCGGGAAATNANCTCCGTNGTGNACACCCATTCTGTGGTGCCGTGCCNTTATCGCAAAAAAGNTTTTGGTGGGCAGACCCTNCAACGGGACAAACGGACCNTACTGGAAT]

[+] EMBL AL696652             [GGGCAAGAATTGGCCCCGCACGGATTATAGGGCCGTGAGCGTGTGGTGGTAGGCCTGGGATACGCTGAAATGAAGGACATTCTCTGCAACGAAGCGTTCCAGGGTCGGCGGACAATTTCTTCATATCGGTTGCGTACATTTGGGAACAAGATTGGGCATCANCTGTACAGATGGATCNTTCTGGAACGAGCAACGCAGCTTCGTCACGCGAAACCTCCGGCCAGAGTGGGCTACCGGAACGGCAAGACGCGATGCACGCACACAGATCCAAAACCCGANAGCTTGGACCGAAACTGGTGGACCGCTTGCCTGGGACAACCGTTGAATGTGCAGCGAAACCGAGTTACCNTTNGGAGGGAGCCCACAAGGGAATAACCCAAGTAACCCCTTTCCAGCGTACCGGCATTNCCCAAGAGAGCGGTNTTTCAACTTNCAACACAACCNGTGTTGGGACTATGGGTAGGGAGGGAAACCCGGGAAATNANCTCCGTNGTGNACACCCATTCTGTGGTGCCGTGCCNTTATCGCAAAAAAGNTTTTGGTGGGCAGACCCTNCAACGGGACAAACGGACCNTACTGGAAT]




>consensus_2234#0
GGGCAAGAATTGGCCCCGCACGGATTATAGGGCCGTGAGCGTGTGGTGGTAGGCCTGGGA
TACGCTGAAATGAAGGACATTCTCTGCAACGAAGCGTTCCAGGGTCGGCGGACAATTTCT
TCATATCGGTTGCGTACATTTGGGAACAAGATTGGGCATCANCTGTACAGATGGATCNTT
CTGGAACGAGCAACGCAGCTTCGTCACGCGAAACCTCCGGCCAGAGTGGGCTACCGGAAC
GGCAAGACGCGATGCACGCACACAGATCCAAAACCCGANAGCTTGGACCGAAACTGGTGG
ACCGCTTGCCTGGGACAACCGTTGAATGTGCAGCGAAACCGAGTTACCNTTNGGAGGGAG
CCCACAAGGGAATAACCCAAGTAACCCCTTTCCAGCGTACCGGCATTNCCCAAGAGAGCG
GTNTTTCAACTTNCAACACAACCNGTGTTGGGACTATGGGTAGGGAGGGAAACCCGGGAA
ATNANCTCCGTNGTGNACACCCATTCTGTGGTGCCGTGCCNTTATCGCAAAAAAGNTTTT
GGTGGGCAGACCCTNCAACGGGACAAACGGACCNTACTGGAAT

consensusID : consensus_2234#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 503
fasta sequence

                              [CCGCGGACGCGTGGGATTCTCTGCAACGAAGCGTTCCAGGGTCGGCCGGACAATTTCTTCATTCGGTTGCGTACATTGGGAACAAGATTGGGCATCACCTGTACAGATGGATCGTTCTGGAACGAGCAACGCAGCTTCGTCACGCGACACCTCCGCCAGGTGGGCTACGGACGGCAGGCGATGCACGAACAGATCCAAACCGAGCTGACCGAACTGCTGGACGTGCTGGACACCCGTGCGGAGCAACCGCTCTGGCCAGGATCGATCCTCGCGCTCAGCGTCATCAACGTGCTGTGGACGATCGTGACTGGCTCTCGAGTGGCCCGAGAAGATGATCGATTGCAGCGACTGCTCGAGTTGCTGCAGGAACGCTCGAAAGTGTTCGACATGGCCGGTGGAACCTTAAACCAGCTGCCCTGGTTGCGTTTCATCGCCCCGGAATGGAGCGGCTACAATCTGGTACGTCGTTTCAACAAGCAGCTGACCGAGTTCTTCTATCCCAC]

[+] EMBL BM630623             [CCGCGGACGCGTGGGATTCTCTGCAACGAAGCGTTCCAGGGTCGGCCGGACAATTTCTTCATTCGGTTGCGTACATTGGGAACAAGATTGGGCATCACCTGTACAGATGGATCGTTCTGGAACGAGCAACGCAGCTTCGTCACGCGACACCTCCGCCAGGTGGGCTACGGACGGCAGGCGATGCACGAACAGATCCAAACCGAGCTGACCGAACTGCTGGACGTGCTGGACACCCGTGCGGAGCAACCGCTCTGGCCAGGATCGATCCTCGCGCTCAGCGTCATCAACGTGCTGTGGACGATCGTGACTGGCTCTCGAGTGGCCCGAGAAGATGATCGATTGCAGCGACTGCTCGAGTTGCTGCAGGAACGCTCGAAAGTGTTCGACATGGCCGGTGGAACCTTAAACCAGCTGCCCTGGTTGCGTTTCATCGCCCCGGAATGGAGCGGCTACAATCTGGTACGTCGTTTCAACAAGCAGCTGACCGAGTTCTTCTATCCCAC]




>consensus_2234#1
CCGCGGACGCGTGGGATTCTCTGCAACGAAGCGTTCCAGGGTCGGCCGGACAATTTCTTC
ATTCGGTTGCGTACATTGGGAACAAGATTGGGCATCACCTGTACAGATGGATCGTTCTGG
AACGAGCAACGCAGCTTCGTCACGCGACACCTCCGCCAGGTGGGCTACGGACGGCAGGCG
ATGCACGAACAGATCCAAACCGAGCTGACCGAACTGCTGGACGTGCTGGACACCCGTGCG
GAGCAACCGCTCTGGCCAGGATCGATCCTCGCGCTCAGCGTCATCAACGTGCTGTGGACG
ATCGTGACTGGCTCTCGAGTGGCCCGAGAAGATGATCGATTGCAGCGACTGCTCGAGTTG
CTGCAGGAACGCTCGAAAGTGTTCGACATGGCCGGTGGAACCTTAAACCAGCTGCCCTGG
TTGCGTTTCATCGCCCCGGAATGGAGCGGCTACAATCTGGTACGTCGTTTCAACAAGCAG
CTGACCGAGTTCTTCTATCCCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2234#0      GGGCAAGAATTGGCCCCGCACGGATTATAGGGCCGTGAGCGTGTGGTGGTAGGCCTGGGA 60
consensus_2234#1      ------------------------------------------------------------
                                                                                  

consensus_2234#0      TACGCTGAAATGAAGGACATTCTCTGCAACGAAGCGTTCCAGGGTCGGC-GGACAATTTC 119
consensus_2234#1      -CCGCGGACGCGTGGG--ATTCTCTGCAACGAAGCGTTCCAGGGTCGGCCGGACAATTTC 57
                        *** **   *  **  ******************************* **********

consensus_2234#0      TTCATATCGGTTGCGTACATTTGGGAACAAGATTGGGCATCANCTGTACAGATGGATCNT 179
consensus_2234#1      TTCAT-TCGGTTGCGTACATT-GGGAACAAGATTGGGCATCACCTGTACAGATGGATCGT 115
                      ***** *************** ******************** *************** *

consensus_2234#0      TCTGGAACGAGCAACGCAGCTTCGTCACGCGAAACCTCCGGCCAGAGTGGGCTACCGGAA 239
consensus_2234#1      TCTGGAACGAGCAACGCAGCTTCGTCACGCGACACCTCCG-CCAG-GTGGGCTAC--GGA 171
                      ******************************** ******* **** *********  * *

consensus_2234#0      CGGCAAGACGCGATGCACGCACACAGATCCAAAACCCGANAGCTTGGACCG--AAACTGG 297
consensus_2234#1      CGGCAGG---CGATGCACGAAC--AGATCCAAA-CCGAGCTGACCGAACTGCTGGACGTG 225
                      ***** *   ********* **  ********* **     *   * ** *    **  *

consensus_2234#0      TGGACCGCTTGCCTGGGACAACCGTTGAATGTGCAGCGAAACCGAGTTACCNTTNGGAGG 357
consensus_2234#1      CTGGACACCCGTGCGGAGCAACCGCTCTGGCCAGGATCGATCCTCGC-GCTCAGCGTCAT 284
                        *  * *  *   **  ****** *             * **  *   *     *    

consensus_2234#0      GAGCCCACAAGGGAATAACCCAAGTAACCCCTTTCCAGCGTACCGGCATTNCCCAAGAGA 417
consensus_2234#1      CAACGTGCTGTGGACGATCGTGACTGGCTCTCGAGTGGCCCGAGAAGATGATCGATTGCA 344
                       * *   *   ***  * *   * *  * *       **        **   * *    *

consensus_2234#0      GCGGTNTTTCAACTTNCAACACAACCNGTGTTGGGACTATGGGTAGGGAGGGAAACCCGG 477
consensus_2234#1      GCGACTGCTCGAGTTGCTGCAGGAACGCTCGAAAGTGTTCGACATGGCCGGTGGAACCTT 404
                      ***     ** * ** *  **  * *  *     *  *  *    **  **   * **  

consensus_2234#0      GAAATNANCTCCGTNGTGNACACCCATTCTGTGGTGCCGTGCCNTTATCGCAAAAAAGNT 537
consensus_2234#1      AAACCAGCTGCCCTGGTTG-----CGTTTCATCGCCCCGGAATGGAGCGGCTACAA---- 455
                       **       ** * **       * **   * *  ***          ** * **    

consensus_2234#0      TTTGGTGGGCAGACCCTNCAACGGGACAAACGGACCNTACTGGAAT-- 583
consensus_2234#1      TCTGGTACGTCGTTTCAACAAGCAGCTGACCGAGTTCTTCTATCCCAC 503
                      * ****  *  *   *  ***   *   * **     * **