cluster # 2243

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 2243 cluster # 2243 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2243#0 length = 551 sequences # 1

consensus_2243#1 length = 323 sequences # 1

consensusID : consensus_2243#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 551
fasta sequence

                              [AGCAGAATCGCCAGAGGTTGCAGATGAACGTTGGCACGATGCCACAGTTTCCTACGCTCAGCGCAACAGCCGCCACCGCAGCAAGCTGGCATGCATCATCTTTCTCACCAACATCAGCCTCACTCCATGCAGACCGTGGCGCAGAACGGTCCCAACACCAATGGAATGCTTTCGCAGGGGCGCACCACAACACGTCGTTGGCTGGCAGTTGGCAACCAGCAGCAGCAGCAGCAGTCCCACGACGTCGGTCGCTCCACAGACGATGCCAAATATGCCGATGCCTCAGCAGCAGCAGCTCGGGGGAATGCCGCCAAGGATTTGCCAATCCTACGTCACCTCCGCCTGTGGGAATGTCCGGCGGTCCGCATCGCACCATCAGATGCAACCGGCAACANCCAATCCGAATCAAGCAAACGCTTCCGCAGATGCGACCGGGCGGAGGACAGGCTCCCGTCAGCTATCCGAGTTACGTCCCCCCAGGCAGCAGCCAACCAGCAGCAAGCAACAGTGTCNCCAACAGATGCCACAAACCGCATCCCGCCAGGGAATGC]

[+] EMBL AL696743             [AGCAGAATCGCCAGAGGTTGCAGATGAACGTTGGCACGATGCCACAGTTTCCTACGCTCAGCGCAACAGCCGCCACCGCAGCAAGCTGGCATGCATCATCTTTCTCACCAACATCAGCCTCACTCCATGCAGACCGTGGCGCAGAACGGTCCCAACACCAATGGAATGCTTTCGCAGGGGCGCACCACAACACGTCGTTGGCTGGCAGTTGGCAACCAGCAGCAGCAGCAGCAGTCCCACGACGTCGGTCGCTCCACAGACGATGCCAAATATGCCGATGCCTCAGCAGCAGCAGCTCGGGGGAATGCCGCCAAGGATTTGCCAATCCTACGTCACCTCCGCCTGTGGGAATGTCCGGCGGTCCGCATCGCACCATCAGATGCAACCGGCAACANCCAATCCGAATCAAGCAAACGCTTCCGCAGATGCGACCGGGCGGAGGACAGGCTCCCGTCAGCTATCCGAGTTACGTCCCCCCAGGCAGCAGCCAACCAGCAGCAAGCAACAGTGTCNCCAACAGATGCCACAAACCGCATCCCGCCAGGGAATGC]




>consensus_2243#0
AGCAGAATCGCCAGAGGTTGCAGATGAACGTTGGCACGATGCCACAGTTTCCTACGCTCA
GCGCAACAGCCGCCACCGCAGCAAGCTGGCATGCATCATCTTTCTCACCAACATCAGCCT
CACTCCATGCAGACCGTGGCGCAGAACGGTCCCAACACCAATGGAATGCTTTCGCAGGGG
CGCACCACAACACGTCGTTGGCTGGCAGTTGGCAACCAGCAGCAGCAGCAGCAGTCCCAC
GACGTCGGTCGCTCCACAGACGATGCCAAATATGCCGATGCCTCAGCAGCAGCAGCTCGG
GGGAATGCCGCCAAGGATTTGCCAATCCTACGTCACCTCCGCCTGTGGGAATGTCCGGCG
GTCCGCATCGCACCATCAGATGCAACCGGCAACANCCAATCCGAATCAAGCAAACGCTTC
CGCAGATGCGACCGGGCGGAGGACAGGCTCCCGTCAGCTATCCGAGTTACGTCCCCCCAG
GCAGCAGCCAACCAGCAGCAAGCAACAGTGTCNCCAACAGATGCCACAAACCGCATCCCG
CCAGGGAATGC

consensusID : consensus_2243#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 323
fasta sequence

                              [GCAGATGCGACCGGGCGGAGGACAGCCTCCCGTCAGCTATCCGAGTTACGTCCCCCAGCAGCAGCAACAGCAGCAGCCACCAGTGTCCCAACAGATGCCACAAACCGCCATCCCGCAGGGAAATGCCGGGCGCTGGTGGACCACCACCACCATCAGCCCAACCGAACGCGAACCATCATCCAAACCAGCAGCAGATGAGCATGCCACCGGCCCACTATCCTCCCACATCTGGTGCACCAACTCACCATCATCCGCAGCAGCAGCAGCAACAACCGCAGCAGCAACAGTTCATGCCACAGATGGGACCACCGCAGATGACCAAC]

[+] EMBL BX623811             [GCAGATGCGACCGGGCGGAGGACAGCCTCCCGTCAGCTATCCGAGTTACGTCCCCCAGCAGCAGCAACAGCAGCAGCCACCAGTGTCCCAACAGATGCCACAAACCGCCATCCCGCAGGGAAATGCCGGGCGCTGGTGGACCACCACCACCATCAGCCCAACCGAACGCGAACCATCATCCAAACCAGCAGCAGATGAGCATGCCACCGGCCCACTATCCTCCCACATCTGGTGCACCAACTCACCATCATCCGCAGCAGCAGCAGCAACAACCGCAGCAGCAACAGTTCATGCCACAGATGGGACCACCGCAGATGACCAAC]




>consensus_2243#1
GCAGATGCGACCGGGCGGAGGACAGCCTCCCGTCAGCTATCCGAGTTACGTCCCCCAGCA
GCAGCAACAGCAGCAGCCACCAGTGTCCCAACAGATGCCACAAACCGCCATCCCGCAGGG
AAATGCCGGGCGCTGGTGGACCACCACCACCATCAGCCCAACCGAACGCGAACCATCATC
CAAACCAGCAGCAGATGAGCATGCCACCGGCCCACTATCCTCCCACATCTGGTGCACCAA
CTCACCATCATCCGCAGCAGCAGCAGCAACAACCGCAGCAGCAACAGTTCATGCCACAGA
TGGGACCACCGCAGATGACCAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2243#0      AGCAGAATCGCCAGAGGTTGCAGATGAACGTTGGCACGATGCCACAGTTTCCTACGCTCA 60
consensus_2243#1      ------------------------------------------------------------
                                                                                  

consensus_2243#0      GCGCAACAGCCGCCACCGCAGCAAGCTGGCATGCATCATCTTTCTCACCAACATCAGCCT 120
consensus_2243#1      ------------------------------------------------------------
                                                                                  

consensus_2243#0      CACTCCATGCAGACCGTGGCGCAGAACGGTCCCAACACCAATGGAATGCTTTCGCAGGGG 180
consensus_2243#1      ------------------------------------------------------------
                                                                                  

consensus_2243#0      CGCACCACAACACGTCGTTGGCTGGCAGTTGGCAACCAGCAGCAGCAGCAGCAGTCCCAC 240
consensus_2243#1      --------------------------------------------GCAGATGCGACCGGGC 16
                                                                  ****  **   *   *

consensus_2243#0      GACGTCGGTCGCTCCACAGACGATGCCAAATATGCCGAT--GCCTCAGCAGCAGCAGCTC 298
consensus_2243#1      GGAGGACAGCCTCCCGTCAGCTATCCGAGTTACGTCCCCCAGCAGCAGCAACAGCAGCAG 76
                      *  *     *   **     * ** * *  ** * *     **  ***** *******  

consensus_2243#0      GGGGGAATGCCGCCAAGGATTTGCCAATCCTACGTCACCTCCGCCTGTGGGAATGTCCGG 358
consensus_2243#1      CCACCAGTGTCCCAACAGATGCCACAAACCGCCATCCCGCAGGGAAATGCCGGGCGCTGG 136
                           * ** * * *  ***    *** **  * ** *    *    **       * **

consensus_2243#0      CGGTCCGCATCGCACCATCAGATGCAACCGGCAACANCCAATCCGAATCAAGCAAAC-GC 417
consensus_2243#1      TGGACCACCAC-CACCATCAG-CCCAACCGAACGCGAACCATC--ATCCAAACCAGCAGC 192
                       ** ** *  * *********   ******    *   * ***  *  *** * * * **

consensus_2243#0      TTCCGCAGATGCGACCGGGCGGAGGACAGGCTCCCGTCAGCTATCCGAGTTACGTCCCCC 477
consensus_2243#1      AGATGAGCATGCCACCGGCCC-ACTATCCTCCCACATCTGGTGCACCAACT-CACCATCA 250
                          *   **** ***** *  *  *    * * * ** * *   * *  * *  *  * 

consensus_2243#0      CAGGCAGCAGCCAACCAGCAGCAAGCAACAGTGTCNCCAACAGATGCCACAAACCGCATC 537
consensus_2243#1      TCCGCAGCAGC--AGCAGCAACAACCG-CAGCAGCAACAGTTCATGCCACAGATGGGACC 307
                         ********  * ***** *** *  ***   *  **    ******** *  * * *

consensus_2243#0      CCGCCAGGGAATGC-- 551
consensus_2243#1      ACCGCAGATGACCAAC 323
                       *  ***   *