cluster # 2258

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Anopheles gambiae
cluster # 2258 cluster # 2258 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2258#0 length = 593 sequences # 1

consensus_2258#1 length = 179 sequences # 1

consensusID : consensus_2258#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 593
fasta sequence

                              [GAGGCAGATCGCACGAGGTGAGCAGGTGCACGGTGTATCGCGACATCATCCTTCTTCGGCGTGCCTGGTTCTGCTTTTGTTTTCCATTTGCGCAATCTCTTCTCGCGTCTTTTGTTGTTGTGATCGATTCGTGCGTGTGTATGTATGTGTGCAGCTCGATCAAAAACCAGAAGAGGGAAAAGGCTAGTGGATGCAAGCCAATACACGAAGGAGGTGCATGCAAGAGGAATAAACACAAAACACGGAACAATAGCAGCAGCAGCAAAACAGTAGAAGAATATCAATATAAACCAAAAGTGTGCGTGCGTGCATGTGTGGTTGTGTGTGAAGTACAACACGTGAAAGACAAAAGCAGACGCACAGAGAGGAGCAAAGTGTGTCATATACAAAAGAGGAACGAGAAGAGAGACCCTTAGGAGCGAAACATGGCGAAGGACGTGATAGAATCAAGATTGGGGCAAACAGAGAACAGAAGCCGNAACGGAACAAAGGATTGTCCAATGTAAAGGATTCGCGCGCACACGACACACAACCTTAACCTACCGAACGACGAACGTCCAGCGTGTGTGTGTGTGTGTGTGTGTGACGGTTAT]

[+] EMBL AL696811             [GAGGCAGATCGCACGAGGTGAGCAGGTGCACGGTGTATCGCGACATCATCCTTCTTCGGCGTGCCTGGTTCTGCTTTTGTTTTCCATTTGCGCAATCTCTTCTCGCGTCTTTTGTTGTTGTGATCGATTCGTGCGTGTGTATGTATGTGTGCAGCTCGATCAAAAACCAGAAGAGGGAAAAGGCTAGTGGATGCAAGCCAATACACGAAGGAGGTGCATGCAAGAGGAATAAACACAAAACACGGAACAATAGCAGCAGCAGCAAAACAGTAGAAGAATATCAATATAAACCAAAAGTGTGCGTGCGTGCATGTGTGGTTGTGTGTGAAGTACAACACGTGAAAGACAAAAGCAGACGCACAGAGAGGAGCAAAGTGTGTCATATACAAAAGAGGAACGAGAAGAGAGACCCTTAGGAGCGAAACATGGCGAAGGACGTGATAGAATCAAGATTGGGGCAAACAGAGAACAGAAGCCGNAACGGAACAAAGGATTGTCCAATGTAAAGGATTCGCGCGCACACGACACACAACCTTAACCTACCGAACGACGAACGTCCAGCGTGTGTGTGTGTGTGTGTGTGTGACGGTTAT]




>consensus_2258#0
GAGGCAGATCGCACGAGGTGAGCAGGTGCACGGTGTATCGCGACATCATCCTTCTTCGGC
GTGCCTGGTTCTGCTTTTGTTTTCCATTTGCGCAATCTCTTCTCGCGTCTTTTGTTGTTG
TGATCGATTCGTGCGTGTGTATGTATGTGTGCAGCTCGATCAAAAACCAGAAGAGGGAAA
AGGCTAGTGGATGCAAGCCAATACACGAAGGAGGTGCATGCAAGAGGAATAAACACAAAA
CACGGAACAATAGCAGCAGCAGCAAAACAGTAGAAGAATATCAATATAAACCAAAAGTGT
GCGTGCGTGCATGTGTGGTTGTGTGTGAAGTACAACACGTGAAAGACAAAAGCAGACGCA
CAGAGAGGAGCAAAGTGTGTCATATACAAAAGAGGAACGAGAAGAGAGACCCTTAGGAGC
GAAACATGGCGAAGGACGTGATAGAATCAAGATTGGGGCAAACAGAGAACAGAAGCCGNA
ACGGAACAAAGGATTGTCCAATGTAAAGGATTCGCGCGCACACGACACACAACCTTAACC
TACCGAACGACGAACGTCCAGCGTGTGTGTGTGTGTGTGTGTGTGACGGTTAT

consensusID : consensus_2258#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 179
fasta sequence

                              [TCCGCATTGTGTCCCTGCCGGAGAATAAGCGTACTCCACATGCTAGGCTGTCCCCGTGAAAAGGCTAGTGGATGCAAGCCAATACACGAAGGAGGTGCATGCAAGAGGAATAAACACAAAACACGGAACAATAGCAGCAGCAGCAGCAGCAGCAAAACAGTAGAAGAATATCAACGATA]

[+] EMBL BM590272             [TCCGCATTGTGTCCCTGCCGGAGAATAAGCGTACTCCACATGCTAGGCTGTCCCCGTGAAAAGGCTAGTGGATGCAAGCCAATACACGAAGGAGGTGCATGCAAGAGGAATAAACACAAAACACGGAACAATAGCAGCAGCAGCAGCAGCAGCAAAACAGTAGAAGAATATCAACGATA]




>consensus_2258#1
TCCGCATTGTGTCCCTGCCGGAGAATAAGCGTACTCCACATGCTAGGCTGTCCCCGTGAA
AAGGCTAGTGGATGCAAGCCAATACACGAAGGAGGTGCATGCAAGAGGAATAAACACAAA
ACACGGAACAATAGCAGCAGCAGCAGCAGCAGCAAAACAGTAGAAGAATATCAACGATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2258#0      GAGGCAGATCGCACGAGGTGAGCAGGTGCACGGTGTATCGCGACATCATCCTTCTTCGGC 60
consensus_2258#1      ------------------------------------------------------------
                                                                                  

consensus_2258#0      GTGCCTGGTTCTGCTTTTGTTTTCCATTTGCGCAATCTCTTCTCGCGTCTTTTGTTGTTG 120
consensus_2258#1      --------------------------------------------------------TCCG 4
                                                                                 *

consensus_2258#0      TGATCGATTCGTGCGTGTGTATGTATGTGTGCAGCTCGATCAAAAACCAGAAGAGGGAAA 180
consensus_2258#1      CATTGTGTCCCTGCCGGAGAATAAGCGTACTCCACATGCT---AGGCTGTCCCCGTGAAA 61
                         *   * * ***  * * **    **   *  *  * *   *  *       * ****

consensus_2258#0      AGGCTAGTGGATGCAAGCCAATACACGAAGGAGGTGCATGCAAGAGGAATAAACACAAAA 240
consensus_2258#1      AGGCTAGTGGATGCAAGCCAATACACGAAGGAGGTGCATGCAAGAGGAATAAACACAAAA 121
                      ************************************************************

consensus_2258#0      CACGGAACAATAGCAGCAGCAGCAAAACAGTAGAAGAATATCAATATAA-ACCAAAAGTG 299
consensus_2258#1      CACGGAACAATAGCAGCAGCAGCAG--CAGCAGCAAAACAGTAGAAGAATATCAACGATA 179
                      ************************   *** ** * ** *  *  * ** * ***   * 

consensus_2258#0      TGCGTGCGTGCATGTGTGGTTGTGTGTGAAGTACAACACGTGAAAGACAAAAGCAGACGC 359
consensus_2258#1      ------------------------------------------------------------
                                                                                  

consensus_2258#0      ACAGAGAGGAGCAAAGTGTGTCATATACAAAAGAGGAACGAGAAGAGAGACCCTTAGGAG 419
consensus_2258#1      ------------------------------------------------------------
                                                                                  

consensus_2258#0      CGAAACATGGCGAAGGACGTGATAGAATCAAGATTGGGGCAAACAGAGAACAGAAGCCGN 479
consensus_2258#1      ------------------------------------------------------------
                                                                                  

consensus_2258#0      AACGGAACAAAGGATTGTCCAATGTAAAGGATTCGCGCGCACACGACACACAACCTTAAC 539
consensus_2258#1      ------------------------------------------------------------
                                                                                  

consensus_2258#0      CTACCGAACGACGAACGTCCAGCGTGTGTGTGTGTGTGTGTGTGTGACGGTTAT 593
consensus_2258#1      ------------------------------------------------------