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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_228#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 675 fasta sequence
[CCGAAAGAATCTCCAATCTGGCATGTGTGAGTGTGTGCTGGTTTGAGGCACTTTTTACTTTGGCTTGTTCATCGACAGGAAAGTGGAAGGAAGAGATTGCAAAAAAAGCACACACACCCCAAGAGTGTTAAAACAACAGATTGCATTTGGCACGCAGGAACAGGAAATGCAAACGTGTGAAAGTGTGCTTAAGGCGTGTACGTTTGTGTGAGTGTGTACATGGGTGCATGGAAAACGGGGCAGAGGGTAAGCAAAGTGTGCAAAATCAATTTGCGATGGTCATTTTCGATATCGTAAAGCCGTCGATAATGTGTGGCTATGAGCATGAGGTTTTTTTTAAATACAAAATTTACTTAAAATGAGCTGAAGCAATCGGAAAGCATCAACAAAAAGTGCACCATAAAATATAGGAACGAGTCGGTTATCCGGTGTTGCGATGACGCTTAATAAGCAGGGCGAGAGAGATCTTAACAAGCGAGTGCAATAAGCAAGGGTGATTGTGTAGGAATTGGATCTTTTTGGTGGAGATCGGAAAGTAAACTGCTCAAGAAATATGATCACAGACAGGAACAGGGCAGAGGTTTCTCATTTCGATAAATTGCGGAAAAGGGCAAACAAAAAACGCCCATGTAAAGTTGTCGTCTCGTAACGAGATTTGAAGTACATTTAGTAGCG]
[+] EMBL BM643945 [CCGAAAGAATCTCCAATCTGGCATGTGTGAGTGTGTGCTGGTTTGAGGCACTTTTTACTTTGGCTTGTTCATCGACAGGAAAGTGGAAGGAAGAGATTGCAAAAAAAGCACACACACCCCAAGAGTGTTAAAACAACAGATTGCATTTGGCACGCAGGAACAGGAAATGCAAACGTGTGAAAGTGTGCTTAAGGCGTGTACGTTTGTGTGAGTGTGTACATGGGTGCATGGAAAACGGGGCAGAGGGTAAGCAAAGTGTGCAAAATCAATTTGCGATGGTCATTTTCGATATCGTAAAGCCGTCGATAATGTGTGGCTATGAGCATGAGGTTTTTTTTAAATACAAAATTTACTTAAAATGAGCTGAAGCAATCGGAAAGCATCAACAAAAAGTGCACCATAAAATATAGGAACGAGTCGGTTATCCGGTGTTGCGATGACGCTTAATAAGCAGGGCGAGAGAGATCTTAACAAGCGAGTGCAATAAGCAAGGGTGATTGTGTAGGAATTGGATCTTTTTGGTGGAGATCGGAAAGTAAACTGCTCAAGAAATATGATCACAGACAGGAACAGGGCAGAGGTTTCTCATTTCGATAAATTGCGGAAAAGGGCAAACAAAAAACGCCCATGTAAAGTTGTCGTCTCGTAACGAGATTTGAAGTACATTTAGTAGCG]
consensusID : consensus_228#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence
[AGAAGCCATTTGTTTTTGGTGGAAGCAATTCGATCACCGGCCACGGTGACGGTAACATGATCGTGAAAACCGTTCTTTACGAGGTGCTGAAGTGTGGTGAAGCCGTTATAGCTGCCACAGCCCAGGCTCGTTGGGTTTTTTTTTCTTTGGGGTTCGATTTTTTGGTTTCCTTTTGGGCTGCTCAGCACGCATGAGGGGGGAAACGTTTAGCGTTTCGTAAAAACGGCCCCCTCCCCGCTCCAGATTGCTGCTAAAGAGTGAAAGAGATTGCAAAAAAAGCGCACACACACCCCAAGAGTGTTAAAACAACAGATTGCATTTGGCACGCAGGAACAGGAAATGCAAACGTGTGAAAGTGTGCTTAAGGCGTGTACGTTTGTGTGAGTGTGTACATGGGTGCATGGAAAACGGGGCAGAGGGTAAGCAAAGTGTGCAAAATCAATTTGCGATGGTCATTTTCGATATCGTAAAGCCGTCGATAATGTGTGGCTATGAGCATAAGAGGGGAGTTTTTTTTTTGAAATACAAAATTTACTTAAAAATGAGCTG]
[+] EMBL BX627214 [AGAAGCCATTTGTTTTTGGTGGAAGCAATTCGATCACCGGCCACGGTGACGGTAACATGATCGTGAAAACCGTTCTTTACGAGGTGCTGAAGTGTGGTGAAGCCGTTATAGCTGCCACAGCCCAGGCTCGTTGGGTTTTTTTTTCTTTGGGGTTCGATTTTTTGGTTTCCTTTTGGGCTGCTCAGCACGCATGAGGGGGGAAACGTTTAGCGTTTCGTAAAAACGGCCCCCTCCCCGCTCCAGATTGCTGCTAAAGAGTGAAAGAGATTGCAAAAAAAGCGCACACACACCCCAAGAGTGTTAAAACAACAGATTGCATTTGGCACGCAGGAACAGGAAATGCAAACGTGTGAAAGTGTGCTTAAGGCGTGTACGTTTGTGTGAGTGTGTACATGGGTGCATGGAAAACGGGGCAGAGGGTAAGCAAAGTGTGCAAAATCAATTTGCGATGGTCATTTTCGATATCGTAAAGCCGTCGATAATGTGTGGCTATGAGCATAAGAGGGGAGTTTTTTTTTTGAAATACAAAATTTACTTAAAAATGAGCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_228#0 ------------------------------------------------------------
consensus_228#1 AGAAGCCATTTGTTTTTGGTGGAAGCAATTCGATCACCGGCCACGGTGACGGTAACATGA 60
consensus_228#0 ------------------------------------------------------------
consensus_228#1 TCGTGAAAACCGTTCTTTACGAGGTGCTGAAGTGTGGTGAAGCCGTTATAGCTGCCACAG 120
consensus_228#0 ------------------------------------------------CCGAAAGAATCT 12
consensus_228#1 CCCAGGCTCGTTGGGTTTTTTTTTCTTTGGGGTTCGATTTTTTGGTTTCCTTTTGGGCTG 180
** *
consensus_228#0 CCAATCTGGCATGTGTGAG----TGTGTGCTGGTTTG-AGGCACTTTTTACTTTGGCTTG 67
consensus_228#1 CTCAGCACGCATGAGGGGGGAAACGTTTAGCGTTTCGTAAAAACGGCCCCCTCCCCGCTC 240
* * * ***** * * * ** * * ** * * ** ** *
consensus_228#0 TTCATCGACAGGAAAGTGGAAGGAAGAGATTGCAAAAAAAGC--ACACACACCCCAAGAG 125
consensus_228#1 CAGATTGCTGCTAAA--GAGTGAAAGAGATTGCAAAAAAAGCGCACACACACCCCAAGAG 298
** * *** * * ******************* ****************
consensus_228#0 TGTTAAAACAACAGATTGCATTTGGCACGCAGGAACAGGAAATGCAAACGTGTGAAAGTG 185
consensus_228#1 TGTTAAAACAACAGATTGCATTTGGCACGCAGGAACAGGAAATGCAAACGTGTGAAAGTG 358
************************************************************
consensus_228#0 TGCTTAAGGCGTGTACGTTTGTGTGAGTGTGTACATGGGTGCATGGAAAACGGGGCAGAG 245
consensus_228#1 TGCTTAAGGCGTGTACGTTTGTGTGAGTGTGTACATGGGTGCATGGAAAACGGGGCAGAG 418
************************************************************
consensus_228#0 GGTAAGCAAAGTGTGCAAAATCAATTTGCGATGGTCATTTTCGATATCGTAAAGCCGTCG 305
consensus_228#1 GGTAAGCAAAGTGTGCAAAATCAATTTGCGATGGTCATTTTCGATATCGTAAAGCCGTCG 478
************************************************************
consensus_228#0 ATAATGTGTGGCTATGAGCATGAGG---------TTTTTTTTAAATACAAAATTTACTTA 356
consensus_228#1 ATAATGTGTGGCTATGAGCATAAGAGGGGAGTTTTTTTTTTGAAATACAAAATTTACTTA 538
********************* ** ******* ******************
consensus_228#0 AAA-TGAGCTGAAGCAATCGGAAAGCATCAACAAAAAGTGCACCATAAAATATAGGAACG 415
consensus_228#1 AAAATGAGCTG------------------------------------------------- 549
*** *******
consensus_228#0 AGTCGGTTATCCGGTGTTGCGATGACGCTTAATAAGCAGGGCGAGAGAGATCTTAACAAG 475
consensus_228#1 ------------------------------------------------------------
consensus_228#0 CGAGTGCAATAAGCAAGGGTGATTGTGTAGGAATTGGATCTTTTTGGTGGAGATCGGAAA 535
consensus_228#1 ------------------------------------------------------------
consensus_228#0 GTAAACTGCTCAAGAAATATGATCACAGACAGGAACAGGGCAGAGGTTTCTCATTTCGAT 595
consensus_228#1 ------------------------------------------------------------
consensus_228#0 AAATTGCGGAAAAGGGCAAACAAAAAACGCCCATGTAAAGTTGTCGTCTCGTAACGAGAT 655
consensus_228#1 ------------------------------------------------------------
consensus_228#0 TTGAAGTACATTTAGTAGCG 675
consensus_228#1 --------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||