cluster # 2281

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Anopheles gambiae
cluster # 2281 cluster # 2281 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2281#0 length = 468 sequences # 1

consensus_2281#1 length = 242 sequences # 1

consensusID : consensus_2281#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 468
fasta sequence

                              [CCGCCCACGCGTCCGATCGGACGCGTGTTGTATTTCGCCTTCGTTCTGCTCAACTCATAAGTCACTTGTTCCGCGTGTGTGTCTATCCGTGTGGTCGCAAATTTGAAAAGTTTGCACAAAGAGCCGTCTCTTTAAAGTGTGATCATAATAGTCTCTAGCCACGTGCATTTGCAACCGCAGCGACAAGCGGGTTCACCCTGTGGATGTGCTGAAATCATTCCGAACCTAGGTGGGAACCGAAAATGCAGTCAAGGTGTTCGTTGGCAATCATGAAGCTTACTTGGGGCTTGGTGGTGACGCTTGGCACGCTCGCAGGGCTCCCTGCATGTGACGCCGTGGCGGCCGAATCTCCCGAGCCGGCATCACTGCTGCGGCCTCGTGACGTCAATCCACACCCGTACCAGCACGCCTACGAGGGTATCGCCATCTTCGACCGGAACCTCATTACCAACAGCGAGAAATTCACCC]

[+] EMBL BM600963             [CCGCCCACGCGTCCGATCGGACGCGTGTTGTATTTCGCCTTCGTTCTGCTCAACTCATAAGTCACTTGTTCCGCGTGTGTGTCTATCCGTGTGGTCGCAAATTTGAAAAGTTTGCACAAAGAGCCGTCTCTTTAAAGTGTGATCATAATAGTCTCTAGCCACGTGCATTTGCAACCGCAGCGACAAGCGGGTTCACCCTGTGGATGTGCTGAAATCATTCCGAACCTAGGTGGGAACCGAAAATGCAGTCAAGGTGTTCGTTGGCAATCATGAAGCTTACTTGGGGCTTGGTGGTGACGCTTGGCACGCTCGCAGGGCTCCCTGCATGTGACGCCGTGGCGGCCGAATCTCCCGAGCCGGCATCACTGCTGCGGCCTCGTGACGTCAATCCACACCCGTACCAGCACGCCTACGAGGGTATCGCCATCTTCGACCGGAACCTCATTACCAACAGCGAGAAATTCACCC]




>consensus_2281#0
CCGCCCACGCGTCCGATCGGACGCGTGTTGTATTTCGCCTTCGTTCTGCTCAACTCATAA
GTCACTTGTTCCGCGTGTGTGTCTATCCGTGTGGTCGCAAATTTGAAAAGTTTGCACAAA
GAGCCGTCTCTTTAAAGTGTGATCATAATAGTCTCTAGCCACGTGCATTTGCAACCGCAG
CGACAAGCGGGTTCACCCTGTGGATGTGCTGAAATCATTCCGAACCTAGGTGGGAACCGA
AAATGCAGTCAAGGTGTTCGTTGGCAATCATGAAGCTTACTTGGGGCTTGGTGGTGACGC
TTGGCACGCTCGCAGGGCTCCCTGCATGTGACGCCGTGGCGGCCGAATCTCCCGAGCCGG
CATCACTGCTGCGGCCTCGTGACGTCAATCCACACCCGTACCAGCACGCCTACGAGGGTA
TCGCCATCTTCGACCGGAACCTCATTACCAACAGCGAGAAATTCACCC

consensusID : consensus_2281#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 242
fasta sequence

                              [CGAAGGGCCAAGAATTCCGCCCNCGGAGNGNATTCAAGGACGCGTGTTGTATTTCGCCTTCGTTCTTGCTCAACTCATAAGTCACTTGTTCCGCGTGTGTGTCTATCCCGTGTGGTCGCAAATTTGAAAAGTTTGCACCAAAGAGCCGTCTCTTTAAAGTGTGATCATAATAGTCTCTAGCCACGTGCATTTGCAACCCGCAAGCGAACAAGCGGGTTCACCCTGGTGGATGTGCTTGAAAT]

[+] EMBL AL696997             [CGAAGGGCCAAGAATTCCGCCCNCGGAGNGNATTCAAGGACGCGTGTTGTATTTCGCCTTCGTTCTTGCTCAACTCATAAGTCACTTGTTCCGCGTGTGTGTCTATCCCGTGTGGTCGCAAATTTGAAAAGTTTGCACCAAAGAGCCGTCTCTTTAAAGTGTGATCATAATAGTCTCTAGCCACGTGCATTTGCAACCCGCAAGCGAACAAGCGGGTTCACCCTGGTGGATGTGCTTGAAAT]




>consensus_2281#1
CGAAGGGCCAAGAATTCCGCCCNCGGAGNGNATTCAAGGACGCGTGTTGTATTTCGCCTT
CGTTCTTGCTCAACTCATAAGTCACTTGTTCCGCGTGTGTGTCTATCCCGTGTGGTCGCA
AATTTGAAAAGTTTGCACCAAAGAGCCGTCTCTTTAAAGTGTGATCATAATAGTCTCTAG
CCACGTGCATTTGCAACCCGCAAGCGAACAAGCGGGTTCACCCTGGTGGATGTGCTTGAA
AT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2281#0      ----------------CCGCCCACGCGTCCGATC---GGACGCGTGTTGTATTTCGCCTT 41
consensus_2281#1      CGAAGGGCCAAGAATTCCGCCCNCGGAGNGNATTCAAGGACGCGTGTTGTATTTCGCCTT 60
                                      ****** **      **    ***********************

consensus_2281#0      CGTTCT-GCTCAACTCATAAGTCACTTGTTCCGCGTGTGTGTCTATCC-GTGTGGTCGCA 99
consensus_2281#1      CGTTCTTGCTCAACTCATAAGTCACTTGTTCCGCGTGTGTGTCTATCCCGTGTGGTCGCA 120
                      ****** ***************************************** ***********

consensus_2281#0      AATTTGAAAAGTTTGCAC-AAAGAGCCGTCTCTTTAAAGTGTGATCATAATAGTCTCTAG 158
consensus_2281#1      AATTTGAAAAGTTTGCACCAAAGAGCCGTCTCTTTAAAGTGTGATCATAATAGTCTCTAG 180
                      ****************** *****************************************

consensus_2281#0      CCACGTGCATTTGCAACC-GCA-GCGA-CAAGCGGGTTCACCCTG-TGGATGTGCT-GAA 213
consensus_2281#1      CCACGTGCATTTGCAACCCGCAAGCGAACAAGCGGGTTCACCCTGGTGGATGTGCTTGAA 240
                      ****************** *** **** ***************** ********** ***

consensus_2281#0      ATCATTCCGAACCTAGGTGGGAACCGAAAATGCAGTCAAGGTGTTCGTTGGCAATCATGA 273
consensus_2281#1      AT---------------------------------------------------------- 242
                      **                                                          

consensus_2281#0      AGCTTACTTGGGGCTTGGTGGTGACGCTTGGCACGCTCGCAGGGCTCCCTGCATGTGACG 333
consensus_2281#1      ------------------------------------------------------------
                                                                                  

consensus_2281#0      CCGTGGCGGCCGAATCTCCCGAGCCGGCATCACTGCTGCGGCCTCGTGACGTCAATCCAC 393
consensus_2281#1      ------------------------------------------------------------
                                                                                  

consensus_2281#0      ACCCGTACCAGCACGCCTACGAGGGTATCGCCATCTTCGACCGGAACCTCATTACCAACA 453
consensus_2281#1      ------------------------------------------------------------
                                                                                  

consensus_2281#0      GCGAGAAATTCACCC 468
consensus_2281#1      ---------------