cluster # 2286

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 2286 cluster # 2286 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2286#0 length = 573 sequences # 1

consensus_2286#1 length = 389 sequences # 1

consensusID : consensus_2286#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 573
fasta sequence

                              [ACGATACACACCTTACACTCATTTAGCCCTAGTAGTATATTGATACGTATTATATGCAACCAGCCAGGGAGAGACCAACAGCATACACACGCACACATACCCACGCAAGCAACCCACTGCTGTGACACTTACTTCAGTCCAAACGTAGAATGTTGAGCTCCAAAAACAGCTCGAAAGCAGCTCGAAGAACCAATCTTCCCAAGAAACTGTGCATTTGTGTGGGTGTGAATGTGTGTGTGTGTGTCTCCTTGTATGGATACGATTGCAAGAAGGAAAAAGTAAGCAAACCTTTGTATTTATTTAAAAAGTGAAACTTAAAAATGATCCACTGCAGTAACCCAGAGTAAAGCACGAACGGGGAAGAAAGAGGCGGATTCTCGTGTATCGAGGAAAATTTAGTTTTTTTTATAACTCTATTGCTATACATATATTATATACATACACACAACACACACTCGAATATATTTAATACTTACCCTCAAAATCTGTAAGCGAGGACGGTCGTCCAGCAACAGGGAAGGGTGAAGTGTTCTTTGTGAACAAGCGAAAAGAAACATAAACGATCCCAAAAGC]

[+] EMBL BX627450             [ACGATACACACCTTACACTCATTTAGCCCTAGTAGTATATTGATACGTATTATATGCAACCAGCCAGGGAGAGACCAACAGCATACACACGCACACATACCCACGCAAGCAACCCACTGCTGTGACACTTACTTCAGTCCAAACGTAGAATGTTGAGCTCCAAAAACAGCTCGAAAGCAGCTCGAAGAACCAATCTTCCCAAGAAACTGTGCATTTGTGTGGGTGTGAATGTGTGTGTGTGTGTCTCCTTGTATGGATACGATTGCAAGAAGGAAAAAGTAAGCAAACCTTTGTATTTATTTAAAAAGTGAAACTTAAAAATGATCCACTGCAGTAACCCAGAGTAAAGCACGAACGGGGAAGAAAGAGGCGGATTCTCGTGTATCGAGGAAAATTTAGTTTTTTTTATAACTCTATTGCTATACATATATTATATACATACACACAACACACACTCGAATATATTTAATACTTACCCTCAAAATCTGTAAGCGAGGACGGTCGTCCAGCAACAGGGAAGGGTGAAGTGTTCTTTGTGAACAAGCGAAAAGAAACATAAACGATCCCAAAAGC]




>consensus_2286#0
ACGATACACACCTTACACTCATTTAGCCCTAGTAGTATATTGATACGTATTATATGCAAC
CAGCCAGGGAGAGACCAACAGCATACACACGCACACATACCCACGCAAGCAACCCACTGC
TGTGACACTTACTTCAGTCCAAACGTAGAATGTTGAGCTCCAAAAACAGCTCGAAAGCAG
CTCGAAGAACCAATCTTCCCAAGAAACTGTGCATTTGTGTGGGTGTGAATGTGTGTGTGT
GTGTCTCCTTGTATGGATACGATTGCAAGAAGGAAAAAGTAAGCAAACCTTTGTATTTAT
TTAAAAAGTGAAACTTAAAAATGATCCACTGCAGTAACCCAGAGTAAAGCACGAACGGGG
AAGAAAGAGGCGGATTCTCGTGTATCGAGGAAAATTTAGTTTTTTTTATAACTCTATTGC
TATACATATATTATATACATACACACAACACACACTCGAATATATTTAATACTTACCCTC
AAAATCTGTAAGCGAGGACGGTCGTCCAGCAACAGGGAAGGGTGAAGTGTTCTTTGTGAA
CAAGCGAAAAGAAACATAAACGATCCCAAAAGC

consensusID : consensus_2286#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 389
fasta sequence

                              [ATCGGCCCAGGTGATACATCAGAAATCAGGGGAACCGAAGCGAACGATACACACCTTACACTCATTTAGCCCTAGTAGTATATTGATACGTATTATATGCAACCAGCCAGGGAGAGACCAACAGCATACACACGCACACATACCCACGCAAGCAACCCACTGCTGTGACACTTACTTCAGTCCAAACGTAGAATGTTGAGCTCCAAAAACAGCTCGAAAGCAGCTCGAAGAACCAATCTTCCCAAGAAACTAGTGGGGCCCCCAAGGTTTAGTGGGTAGGTGGGTTGTAGAACTGTGTGNTNGTGGTAGTGGTACCTCCCTTTGGTCAATTGGGGCATTACCGGCAATTTTGGCCAAAGGCACAGGCGGCACAACAACAGGTACAGGCC]

[+] EMBL AL932840             [ATCGGCCCAGGTGATACATCAGAAATCAGGGGAACCGAAGCGAACGATACACACCTTACACTCATTTAGCCCTAGTAGTATATTGATACGTATTATATGCAACCAGCCAGGGAGAGACCAACAGCATACACACGCACACATACCCACGCAAGCAACCCACTGCTGTGACACTTACTTCAGTCCAAACGTAGAATGTTGAGCTCCAAAAACAGCTCGAAAGCAGCTCGAAGAACCAATCTTCCCAAGAAACTAGTGGGGCCCCCAAGGTTTAGTGGGTAGGTGGGTTGTAGAACTGTGTGNTNGTGGTAGTGGTACCTCCCTTTGGTCAATTGGGGCATTACCGGCAATTTTGGCCAAAGGCACAGGCGGCACAACAACAGGTACAGGCC]




>consensus_2286#1
ATCGGCCCAGGTGATACATCAGAAATCAGGGGAACCGAAGCGAACGATACACACCTTACA
CTCATTTAGCCCTAGTAGTATATTGATACGTATTATATGCAACCAGCCAGGGAGAGACCA
ACAGCATACACACGCACACATACCCACGCAAGCAACCCACTGCTGTGACACTTACTTCAG
TCCAAACGTAGAATGTTGAGCTCCAAAAACAGCTCGAAAGCAGCTCGAAGAACCAATCTT
CCCAAGAAACTAGTGGGGCCCCCAAGGTTTAGTGGGTAGGTGGGTTGTAGAACTGTGTGN
TNGTGGTAGTGGTACCTCCCTTTGGTCAATTGGGGCATTACCGGCAATTTTGGCCAAAGG
CACAGGCGGCACAACAACAGGTACAGGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2286#0      -------------------------------------------ACGATACACACCTTACA 17
consensus_2286#1      ATCGGCCCAGGTGATACATCAGAAATCAGGGGAACCGAAGCGAACGATACACACCTTACA 60
                                                                 *****************

consensus_2286#0      CTCATTTAGCCCTAGTAGTATATTGATACGTATTATATGCAACCAGCCAGGGAGAGACCA 77
consensus_2286#1      CTCATTTAGCCCTAGTAGTATATTGATACGTATTATATGCAACCAGCCAGGGAGAGACCA 120
                      ************************************************************

consensus_2286#0      ACAGCATACACACGCACACATACCCACGCAAGCAACCCACTGCTGTGACACTTACTTCAG 137
consensus_2286#1      ACAGCATACACACGCACACATACCCACGCAAGCAACCCACTGCTGTGACACTTACTTCAG 180
                      ************************************************************

consensus_2286#0      TCCAAACGTAGAATGTTGAGCTCCAAAAACAGCTCGAAAGCAGCTCGAAGAACCAATCTT 197
consensus_2286#1      TCCAAACGTAGAATGTTGAGCTCCAAAAACAGCTCGAAAGCAGCTCGAAGAACCAATCTT 240
                      ************************************************************

consensus_2286#0      CCCAAGAAACT-GTGCATTTGTGTGGGTGTGAATGTGTGTGTGTGTGTCTCCTTGTATGG 256
consensus_2286#1      CCCAAGAAACTAGTGGGGCCCCCAAGGTTTA---GTGGGTAGGTGGGTT----------- 286
                      *********** ***          *** *    *** **  *** **            

consensus_2286#0      ATACGATTGCAAGAAGGAAAAAGTAAGCAAACCTTTGTATTTATTTAAAAAGTGAAACTT 316
consensus_2286#1      GTAGAACTGTGTGNTNGTGGTAGTG-GTACCTCCCTTTGGTCAATTGGGGCATTACCGGC 345
                       **  * **   *   *    ***  * *   *  * *  * * **      * *     

consensus_2286#0      AAAAATGATCCACTGCAGTAACCCAGAGTAAAGCACGAACGGGGAAGAAAGAGGCGGATT 376
consensus_2286#1      AATTTTGGCCAAAGGCA-CAGGCGGCACAACAACAGGTACAGGCC--------------- 389
                      **   **  * *  ***  *  *   *  * * ** * ** **                 

consensus_2286#0      CTCGTGTATCGAGGAAAATTTAGTTTTTTTTATAACTCTATTGCTATACATATATTATAT 436
consensus_2286#1      ------------------------------------------------------------
                                                                                  

consensus_2286#0      ACATACACACAACACACACTCGAATATATTTAATACTTACCCTCAAAATCTGTAAGCGAG 496
consensus_2286#1      ------------------------------------------------------------
                                                                                  

consensus_2286#0      GACGGTCGTCCAGCAACAGGGAAGGGTGAAGTGTTCTTTGTGAACAAGCGAAAAGAAACA 556
consensus_2286#1      ------------------------------------------------------------
                                                                                  

consensus_2286#0      TAAACGATCCCAAAAGC 573
consensus_2286#1      -----------------