cluster # 2287

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 2287 cluster # 2287 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2287#0 length = 666 sequences # 1

consensus_2287#1 length = 368 sequences # 1

consensusID : consensus_2287#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 666
fasta sequence

                              [CCGGACGCGCGCTCGCTGGCTGTCCGCAAACTGAACTGTACTAAGCGAACTGAAAAAACAGTCGCGAAACGCGTGTGTTCTGTGCGTGCCCAGTGTTCGTTCCAGTGTCATTGTGACAAATTCCCATTTGTTCCAAAGTTCTACCCGAAGGGTGGTGGTGTTGAGTGGTAAAGCTGCGCAACGAACGAGTGATTGAGAGTGTTCCTGAGGATCTAACTTTGTGTTTTGTCCTAGTGATGTGACAATTGTGAGTTCCGTTTAATGTGCTGCCAATAGAATGGCCTTATGTAGTCACAAAGTGTCCCTAAGCATAGCAAGTACATTGAAGCGTTTGTGTCCGTGTTTGAGCAAGTGTTTGAGCAAGTGAATAATAACGGTGCTCCCCGAAGTGTGAGTGGAAACCAAAACCATGGCGCTAGTGAACTATACCCTGCCCTTTGGCAACATTCAGGCCCCGACGTGGGCCACCGCAAGTCCGCTGCAAAACCAGCACGCCTCGGCTGTGAACAATCTGCTGTACGGTCCCGCCGGTCATCAGGGTGACGATCAGGACTACTACAAAAATGCACCCTATGCACCACCGCAGCGGCAAGCAAAGCAATCTCCTCAGCAGCAGCAGCAGCAGCAACATTCTATTCAGTACCGACAGACGCCCCGCAACAACTA]

[+] EMBL BM610975             [CCGGACGCGCGCTCGCTGGCTGTCCGCAAACTGAACTGTACTAAGCGAACTGAAAAAACAGTCGCGAAACGCGTGTGTTCTGTGCGTGCCCAGTGTTCGTTCCAGTGTCATTGTGACAAATTCCCATTTGTTCCAAAGTTCTACCCGAAGGGTGGTGGTGTTGAGTGGTAAAGCTGCGCAACGAACGAGTGATTGAGAGTGTTCCTGAGGATCTAACTTTGTGTTTTGTCCTAGTGATGTGACAATTGTGAGTTCCGTTTAATGTGCTGCCAATAGAATGGCCTTATGTAGTCACAAAGTGTCCCTAAGCATAGCAAGTACATTGAAGCGTTTGTGTCCGTGTTTGAGCAAGTGTTTGAGCAAGTGAATAATAACGGTGCTCCCCGAAGTGTGAGTGGAAACCAAAACCATGGCGCTAGTGAACTATACCCTGCCCTTTGGCAACATTCAGGCCCCGACGTGGGCCACCGCAAGTCCGCTGCAAAACCAGCACGCCTCGGCTGTGAACAATCTGCTGTACGGTCCCGCCGGTCATCAGGGTGACGATCAGGACTACTACAAAAATGCACCCTATGCACCACCGCAGCGGCAAGCAAAGCAATCTCCTCAGCAGCAGCAGCAGCAGCAACATTCTATTCAGTACCGACAGACGCCCCGCAACAACTA]




>consensus_2287#0
CCGGACGCGCGCTCGCTGGCTGTCCGCAAACTGAACTGTACTAAGCGAACTGAAAAAACA
GTCGCGAAACGCGTGTGTTCTGTGCGTGCCCAGTGTTCGTTCCAGTGTCATTGTGACAAA
TTCCCATTTGTTCCAAAGTTCTACCCGAAGGGTGGTGGTGTTGAGTGGTAAAGCTGCGCA
ACGAACGAGTGATTGAGAGTGTTCCTGAGGATCTAACTTTGTGTTTTGTCCTAGTGATGT
GACAATTGTGAGTTCCGTTTAATGTGCTGCCAATAGAATGGCCTTATGTAGTCACAAAGT
GTCCCTAAGCATAGCAAGTACATTGAAGCGTTTGTGTCCGTGTTTGAGCAAGTGTTTGAG
CAAGTGAATAATAACGGTGCTCCCCGAAGTGTGAGTGGAAACCAAAACCATGGCGCTAGT
GAACTATACCCTGCCCTTTGGCAACATTCAGGCCCCGACGTGGGCCACCGCAAGTCCGCT
GCAAAACCAGCACGCCTCGGCTGTGAACAATCTGCTGTACGGTCCCGCCGGTCATCAGGG
TGACGATCAGGACTACTACAAAAATGCACCCTATGCACCACCGCAGCGGCAAGCAAAGCA
ATCTCCTCAGCAGCAGCAGCAGCAGCAACATTCTATTCAGTACCGACAGACGCCCCGCAA
CAACTA

consensusID : consensus_2287#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 368
fasta sequence

                              [AGATCGGCCNGAGGTGCAATAGAATGGCTTATGTAGTCACAAAGTGTCCTAAGCATAGCAAGTACATTGAAGCGTTTGTGTCCGTGTTTGAGCAAGTGTTTGAGCAAGTGAATAATAACGGTGCTCCCCGGAAGTGTGAGTGGAAACCAAAACCATGGCGCTAGTGAACTATACCCTGGGCGCCTTTTGGGCAAACCAATTCAAGGGCCCCGGACGTGGGCCACCGGCAAAGTCCCGCNCTGGCCAAAAAACCCAGTGCCACGCCTCGGGGCTGTGAACCAAATCTTGCCTGTTACCCGGGNTCCCCCCGGCNCGGGTTCCATCAAGCGGGTGACCGAATCCAGGGAACTTAACTTACCAAAAAAATT]

[+] EMBL AL697032             [AGATCGGCCNGAGGTGCAATAGAATGGCTTATGTAGTCACAAAGTGTCCTAAGCATAGCAAGTACATTGAAGCGTTTGTGTCCGTGTTTGAGCAAGTGTTTGAGCAAGTGAATAATAACGGTGCTCCCCGGAAGTGTGAGTGGAAACCAAAACCATGGCGCTAGTGAACTATACCCTGGGCGCCTTTTGGGCAAACCAATTCAAGGGCCCCGGACGTGGGCCACCGGCAAAGTCCCGCNCTGGCCAAAAAACCCAGTGCCACGCCTCGGGGCTGTGAACCAAATCTTGCCTGTTACCCGGGNTCCCCCCGGCNCGGGTTCCATCAAGCGGGTGACCGAATCCAGGGAACTTAACTTACCAAAAAAATT]




>consensus_2287#1
AGATCGGCCNGAGGTGCAATAGAATGGCTTATGTAGTCACAAAGTGTCCTAAGCATAGCA
AGTACATTGAAGCGTTTGTGTCCGTGTTTGAGCAAGTGTTTGAGCAAGTGAATAATAACG
GTGCTCCCCGGAAGTGTGAGTGGAAACCAAAACCATGGCGCTAGTGAACTATACCCTGGG
CGCCTTTTGGGCAAACCAATTCAAGGGCCCCGGACGTGGGCCACCGGCAAAGTCCCGCNC
TGGCCAAAAAACCCAGTGCCACGCCTCGGGGCTGTGAACCAAATCTTGCCTGTTACCCGG
GNTCCCCCCGGCNCGGGTTCCATCAAGCGGGTGACCGAATCCAGGGAACTTAACTTACCA
AAAAAATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2287#0      CCGGACGCGCGCTCGCTGGCTGTCCGCAAACTGAACTGTACTAAGCGAACTGAAAAAACA 60
consensus_2287#1      ------------------------------------------------------------
                                                                                  

consensus_2287#0      GTCGCGAAACGCGTGTGTTCTGTGCGTGCCCAGTGTTCGTTCCAGTGTCATTGTGACAAA 120
consensus_2287#1      ------------------------------------------------------------
                                                                                  

consensus_2287#0      TTCCCATTTGTTCCAAAGTTCTACCCGAAGGGTGGTGGTGTTGAGTGGTAAAGCTGCGCA 180
consensus_2287#1      ------------------------------------------------------------
                                                                                  

consensus_2287#0      ACGAACGAGTGATTGAGAGTGTTCCTGAGGATCTAACTTTGTGTTTTGTCCTAGTGATGT 240
consensus_2287#1      ------------------------------------------------------------
                                                                                  

consensus_2287#0      GACAATTGTGAGTTCCGTTTAATGTGCTGCCAATAGAATGGCCTTATGTAGTCACAAAGT 300
consensus_2287#1      ----------AGATCGGCCNGAGGTG----CAATAGAATGGC-TTATGTAGTCACAAAGT 45
                                ** ** *    * ***    ************ *****************

consensus_2287#0      GTCCCTAAGCATAGCAAGTACATTGAAGCGTTTGTGTCCGTGTTTGAGCAAGTGTTTGAG 360
consensus_2287#1      GTCC-TAAGCATAGCAAGTACATTGAAGCGTTTGTGTCCGTGTTTGAGCAAGTGTTTGAG 104
                      **** *******************************************************

consensus_2287#0      CAAGTGAATAATAACGGTGCTCCCCG-AAGTGTGAGTGGAAACCAAAACCATGGCGCTAG 419
consensus_2287#1      CAAGTGAATAATAACGGTGCTCCCCGGAAGTGTGAGTGGAAACCAAAACCATGGCGCTAG 164
                      ************************** *********************************

consensus_2287#0      TGAACTATACCCTG-----CCCTTTGGCAAC---ATTCAGG---CCCCGACGTGGGCCAC 468
consensus_2287#1      TGAACTATACCCTGGGCGCCTTTTGGGCAAACCAATTCAAGGGCCCCGGACGTGGGCCAC 224
                      **************     *  ** *****    ***** *   *** ************

consensus_2287#0      CG-CAAGTCCGCTGCAAAACCAGCACGCCTCGGCTGTGAACAATCTGCTGTACGGTCCCG 527
consensus_2287#1      CGGCAAAGTCCCGCNCTGGCCAAAAAACCCAG--TGCCACGCCTCGGGGCTGTGAACCAA 282
                      ** ***   * *       ***  *  **  *  **  *    ** *   *  *  **  

consensus_2287#0      CCGGTCATCAGGGTGACGATCAGGACTACTACAAAAATGCACCCTATGCACCACCGCAGC 587
consensus_2287#1      ------ATCTTGCCTGTTACCCGGGNTCCCCCCGGCNCGGGTTCCATCAAGCGG-GTGAC 335
                            ***  *      * * **  * *  *      *    * **  * *   *   *

consensus_2287#0      GGCAAGCAAAGCAATCTCCTCAGCAGCAGCAGCAGCAGCAACATTCTATTCAGTACCGAC 647
consensus_2287#1      CGAATCCAGGGAACTTAACTTACCAAAAAAATT--------------------------- 368
                       * *  **  * * *   ** * **  *  *                             

consensus_2287#0      AGACGCCCCGCAACAACTA 666
consensus_2287#1      -------------------