cluster # 229

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Anopheles gambiae
cluster # 229 cluster # 229 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_229#0 length = 694 sequences # 1

consensus_229#1 length = 603 sequences # 1

consensusID : consensus_229#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 694
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGAGGAGATCGCGCTGAACTGCGGTACCATGCTGCGCGAGTGCGCCCGTTACGAGGCGCTCGCCAAGATCATGCTGCACTCGGACGAGTTCTTCAACTTCTTCCGCTACGTCGAGGTGTCCACGTTCGATATTGCGTCCGATGCATTCTCCACCTTCAAGGAGCTGCTCACCCGCCACAAGATCCTGTGCGCGGAGTTCCTCGAGCAGAACTACGACAAGGTGTTCAACCACTACGAGCATCTGCTCAACTCGGAAAACTACGTGACGCGGCGGCAAAGCCTTAAGCTGCTCGGCGAGCTGCTGCTCGACCGGCACAACTTCACGGTCATGACGAAGTACATCTCCAACCCGGACAACCTGAAGCTGATGATGAACATGCTCAAGGAGAAGTCGCGCAACATCCAGTTCGAGGCGTTCCACGTGTTCAAGGTGTTTGTCGCGAACCCGAACAAACCGAAACCGATCCTGGACATACTGCTGCGCAACCAGGAAAAGCTGGTCGACTTTCTGACCCGCTTCCACACCGACCGCTCGGAGGACGAACAGTTCAACGACGAGAAGGCTTACCTGATCAAGCAGATCAAGGAGCTAAAGCCGGCCCCGGATCAATAGTCGTGCCGCGCCGACATTGCCACCCGCTCATC]

[+] EMBL BM586417             [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGAGGAGATCGCGCTGAACTGCGGTACCATGCTGCGCGAGTGCGCCCGTTACGAGGCGCTCGCCAAGATCATGCTGCACTCGGACGAGTTCTTCAACTTCTTCCGCTACGTCGAGGTGTCCACGTTCGATATTGCGTCCGATGCATTCTCCACCTTCAAGGAGCTGCTCACCCGCCACAAGATCCTGTGCGCGGAGTTCCTCGAGCAGAACTACGACAAGGTGTTCAACCACTACGAGCATCTGCTCAACTCGGAAAACTACGTGACGCGGCGGCAAAGCCTTAAGCTGCTCGGCGAGCTGCTGCTCGACCGGCACAACTTCACGGTCATGACGAAGTACATCTCCAACCCGGACAACCTGAAGCTGATGATGAACATGCTCAAGGAGAAGTCGCGCAACATCCAGTTCGAGGCGTTCCACGTGTTCAAGGTGTTTGTCGCGAACCCGAACAAACCGAAACCGATCCTGGACATACTGCTGCGCAACCAGGAAAAGCTGGTCGACTTTCTGACCCGCTTCCACACCGACCGCTCGGAGGACGAACAGTTCAACGACGAGAAGGCTTACCTGATCAAGCAGATCAAGGAGCTAAAGCCGGCCCCGGATCAATAGTCGTGCCGCGCCGACATTGCCACCCGCTCATC]




>consensus_229#0
CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGAGGAGATCG
CGCTGAACTGCGGTACCATGCTGCGCGAGTGCGCCCGTTACGAGGCGCTCGCCAAGATCA
TGCTGCACTCGGACGAGTTCTTCAACTTCTTCCGCTACGTCGAGGTGTCCACGTTCGATA
TTGCGTCCGATGCATTCTCCACCTTCAAGGAGCTGCTCACCCGCCACAAGATCCTGTGCG
CGGAGTTCCTCGAGCAGAACTACGACAAGGTGTTCAACCACTACGAGCATCTGCTCAACT
CGGAAAACTACGTGACGCGGCGGCAAAGCCTTAAGCTGCTCGGCGAGCTGCTGCTCGACC
GGCACAACTTCACGGTCATGACGAAGTACATCTCCAACCCGGACAACCTGAAGCTGATGA
TGAACATGCTCAAGGAGAAGTCGCGCAACATCCAGTTCGAGGCGTTCCACGTGTTCAAGG
TGTTTGTCGCGAACCCGAACAAACCGAAACCGATCCTGGACATACTGCTGCGCAACCAGG
AAAAGCTGGTCGACTTTCTGACCCGCTTCCACACCGACCGCTCGGAGGACGAACAGTTCA
ACGACGAGAAGGCTTACCTGATCAAGCAGATCAAGGAGCTAAAGCCGGCCCCGGATCAAT
AGTCGTGCCGCGCCGACATTGCCACCCGCTCATC

consensusID : consensus_229#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 603
fasta sequence

                              [CCGCCCACGCGTCCGGTGGTGTGTGGGGGTCGTCAGCCAAATCGATGATTACATTTCTTCTCCTCCATTTTTTTATATCGACAAGGGCGCGCACGACCATCTGTCGCGCCGAAATCTCTTTCTAATTTGTTTTTACAATCAGGTTTTGTAAGTGAGTGACAAAAAAATACAAAAATAACATTAAAAAACAAATACACTTTTACAAAGGAAGATAAAAATTATTCTTAGTGTGGTTAGGGAAGCCAGGGAACAGAGTTTAGGGAAAAAGGGGGGTAACTCTAATAATGTAATTAATAATAATATCAGCGGTAGGAAGTGTACCCCACAGCAGTAGAGGGGGAGGGAGACACTGTTTTTTAAACACCCACAAAAATACACAAAACACAACACGCACACACCCATGTATGCTGCACATACTGGATACAAACACACGTACACAACATCTACACACTCTCATATTGACACAACGACACACGTACTCTTCTGTGTCATCTCCCCCCAGTCTCTCATGTATTTCGCAAATGCGTTAGGAAAGGCCACGGTCCTTCCTCCCAAGGAAATGAGGTAGCGAGAGAGGTGGCAGCAAATGTGCACTGGGGCTCC]

[+] EMBL BM596528             [CCGCCCACGCGTCCGGTGGTGTGTGGGGGTCGTCAGCCAAATCGATGATTACATTTCTTCTCCTCCATTTTTTTATATCGACAAGGGCGCGCACGACCATCTGTCGCGCCGAAATCTCTTTCTAATTTGTTTTTACAATCAGGTTTTGTAAGTGAGTGACAAAAAAATACAAAAATAACATTAAAAAACAAATACACTTTTACAAAGGAAGATAAAAATTATTCTTAGTGTGGTTAGGGAAGCCAGGGAACAGAGTTTAGGGAAAAAGGGGGGTAACTCTAATAATGTAATTAATAATAATATCAGCGGTAGGAAGTGTACCCCACAGCAGTAGAGGGGGAGGGAGACACTGTTTTTTAAACACCCACAAAAATACACAAAACACAACACGCACACACCCATGTATGCTGCACATACTGGATACAAACACACGTACACAACATCTACACACTCTCATATTGACACAACGACACACGTACTCTTCTGTGTCATCTCCCCCCAGTCTCTCATGTATTTCGCAAATGCGTTAGGAAAGGCCACGGTCCTTCCTCCCAAGGAAATGAGGTAGCGAGAGAGGTGGCAGCAAATGTGCACTGGGGCTCC]




>consensus_229#1
CCGCCCACGCGTCCGGTGGTGTGTGGGGGTCGTCAGCCAAATCGATGATTACATTTCTTC
TCCTCCATTTTTTTATATCGACAAGGGCGCGCACGACCATCTGTCGCGCCGAAATCTCTT
TCTAATTTGTTTTTACAATCAGGTTTTGTAAGTGAGTGACAAAAAAATACAAAAATAACA
TTAAAAAACAAATACACTTTTACAAAGGAAGATAAAAATTATTCTTAGTGTGGTTAGGGA
AGCCAGGGAACAGAGTTTAGGGAAAAAGGGGGGTAACTCTAATAATGTAATTAATAATAA
TATCAGCGGTAGGAAGTGTACCCCACAGCAGTAGAGGGGGAGGGAGACACTGTTTTTTAA
ACACCCACAAAAATACACAAAACACAACACGCACACACCCATGTATGCTGCACATACTGG
ATACAAACACACGTACACAACATCTACACACTCTCATATTGACACAACGACACACGTACT
CTTCTGTGTCATCTCCCCCCAGTCTCTCATGTATTTCGCAAATGCGTTAGGAAAGGCCAC
GGTCCTTCCTCCCAAGGAAATGAGGTAGCGAGAGAGGTGGCAGCAAATGTGCACTGGGGC
TCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_229#0      CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGAGGAGATCG 60
consensus_229#1      ------------------------------------CCGCCCACGCGTCCGGTGGTGT-G 23
                                                         ***************  *   * *

consensus_229#0      CGCTGAACTGCGGTACCATGCTGCGCGAGTGCGCCCGTTACGAGGCGCTCGCCAAGATCA 120
consensus_229#1      TGGGGGTCGTCAG--CCAAATCG-ATGATTACATTTCTTCTCCTCCATTTTTTTATATCG 80
                      *  *  *  * *  ***    *   ** * *     **      *  *     * *** 

consensus_229#0      TGCTGCACTCGGACGAGTTCTTCAACTTCTTCCGCTACGTCGAGGTGTCCACGTTCGATA 180
consensus_229#1      ACAAGGGCGCGCACGA-----------CCATCTGTCGCGCCGAAATCTCT---TTCTAAT 126
                         *  * ** ****            * ** *   ** ***  * **    *** *  

consensus_229#0      TTGCGTCCGATGCATTCTCCACCTTCAAGGAGCTGCTCACCCGCCACAAGATCCTGTGCG 240
consensus_229#1      TTGTTTT---TACAATCAGGTTTTGTAAGTGAGTGACAAAAAAATACAAAAATAACATTA 183
                     ***  *    * ** **      *  ***    **   *      **** *         

consensus_229#0      CGGAGTTCCTCGAGCAGAACTACGACAAGGTGTTCAACCACTACGAGCATCTGCTCAACT 300
consensus_229#1      AAAAA-----CAAATACACTTTTACAAAGGAAGATAAAAATTAT---TCTTAGTGTGGTT 235
                        *      * *  * *  *     ****     **  * **      *  *      *

consensus_229#0      CGGAAAACTACGTGACGCGGCGGCAAAGCCTTAAGCTGCTCGGCGAGCTGCTGCTCGACC 360
consensus_229#1      AGGGAAGCCAGGGAACA--GAGTTTAGGGAAAAAGGGGGGTAACT--CTAATAATGTAAT 291
                      ** ** * * *  **   * *   * *    ***  *     *   **  *  *  *  

consensus_229#0      GGCACAACTTCACGGTCATGACGAAGTACATCTCCAACCCGGACAACCTGAAGCTGATGA 420
consensus_229#1      TA-ATAATAATATCAGCGGTAGGAAGTGTACCCCACAGCAGTAGAGGGGGAGGGAGACAC 350
                        * **    *    *   * *****  * * *  * * * * *    ** *  **   

consensus_229#0      TGAACATGCTCAAGGAGAAGTCGCGCAACATCCAGTTCGAGGCGTTC-CACGTGTTCAAG 479
consensus_229#1      TGT---TTTTTAAACACCCACAAAAATACACAAAACACAACACGCACACACCCATGTATG 407
                     **    *  * **  *           ***   *   * *  **  * ***   *  * *

consensus_229#0      GTGTTTGTCGCGAACCCGAACAAACCGAAACCGATCCTGGACATACTGCTGCGCAACCAG 539
consensus_229#1      CTGCACATACTGGATACAAACACACGTACAC--AACATCTACACACTCTCATATTGACAC 465
                      **    *   * *  * **** **  * **  * * *  *** ***          ** 

consensus_229#0      GAAAAGCTGGTCGACTTTCTGACCCGCTTCCACACCGACCGCTCGGAGGACGAACAGTTC 599
consensus_229#1      AACGACACACGTACTCTTCTGTGTCATCTCC-CCCCAGTCTCTCATGTATTTCGCAAAT- 523
                      *  *           *****   *   *** * **   * ***          **  * 

consensus_229#0      AACGACGAGAAGGCTTACCTGATCAAGCAGATCAAGGAGCTAAAGCCGGCCCCGGATCAA 659
consensus_229#1      -GCGTTAGGAAAGGCCAC--GGTCCTTCCTCCCAAGGAAATGAGGTAGCGAGAGAGGTGG 580
                       **    *** *   **  * **   *    ******  * * *  *     *      

consensus_229#0      TAGTCGTGCCGCGCCGACATTGCCACCCGCTCATC 694
consensus_229#1      CAGCAAATGTGCACTGGGGCTCC------------ 603
                      **       ** * *    * *