cluster # 2295

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Anopheles gambiae
cluster # 2295 cluster # 2295 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2295#0 length = 614 sequences # 1

consensus_2295#1 length = 314 sequences # 1

consensusID : consensus_2295#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 614
fasta sequence

                              [CCGCCCACGCGTCCGTGAAAAATCAATAATGTTGCCCAAATGCACTGCGTACCAGAGGATGGGGTGTAAACACCGAACAACAGCCCCAAACCACACGGAAGCTGTTGAGCCGACGATCTGACTGTTGACACTGCAACCTAATTGGAAACAGCAGCGGATTTTCCGCAGCAGCACCAATCGCATCGAAAACATTTCCGCTTGCAATCCCTCGCTGCGTTTGTTAAACTTTCCACTGTGATGTGATCATTGAAAACGTTGAGCGAGCGCAAAACCGGAAAAGTGTACACCCTTTCGCACCCCTTCCTGCCCTTTGCATTCTGGCACTTCTTCGGCCCGCGTTTGGCATAAAATTAAGGTACACATCCGGTGACAGCATTACGCAGCATTCGCTCCACCGACCACAATGGTTATTTTCCGGTCAGTTTGTTTGTGTGCGAAACAATCTCACGATTCCGTAGGGAAGGGATCCCTTCCAACGGGCTGTCGCGCCCTTTACCTCCCGCCGGCTCCCGGGGGGGATGAGTGTAAAACAATTAAATTTTCATGCTCATGTGATGCTTGTGCTGTGATGTGGAAATCGGCTTCGGTCGGGCCCCCTTCCCCCTCGCGGGTGC]

[+] EMBL BM601772             [CCGCCCACGCGTCCGTGAAAAATCAATAATGTTGCCCAAATGCACTGCGTACCAGAGGATGGGGTGTAAACACCGAACAACAGCCCCAAACCACACGGAAGCTGTTGAGCCGACGATCTGACTGTTGACACTGCAACCTAATTGGAAACAGCAGCGGATTTTCCGCAGCAGCACCAATCGCATCGAAAACATTTCCGCTTGCAATCCCTCGCTGCGTTTGTTAAACTTTCCACTGTGATGTGATCATTGAAAACGTTGAGCGAGCGCAAAACCGGAAAAGTGTACACCCTTTCGCACCCCTTCCTGCCCTTTGCATTCTGGCACTTCTTCGGCCCGCGTTTGGCATAAAATTAAGGTACACATCCGGTGACAGCATTACGCAGCATTCGCTCCACCGACCACAATGGTTATTTTCCGGTCAGTTTGTTTGTGTGCGAAACAATCTCACGATTCCGTAGGGAAGGGATCCCTTCCAACGGGCTGTCGCGCCCTTTACCTCCCGCCGGCTCCCGGGGGGGATGAGTGTAAAACAATTAAATTTTCATGCTCATGTGATGCTTGTGCTGTGATGTGGAAATCGGCTTCGGTCGGGCCCCCTTCCCCCTCGCGGGTGC]




>consensus_2295#0
CCGCCCACGCGTCCGTGAAAAATCAATAATGTTGCCCAAATGCACTGCGTACCAGAGGAT
GGGGTGTAAACACCGAACAACAGCCCCAAACCACACGGAAGCTGTTGAGCCGACGATCTG
ACTGTTGACACTGCAACCTAATTGGAAACAGCAGCGGATTTTCCGCAGCAGCACCAATCG
CATCGAAAACATTTCCGCTTGCAATCCCTCGCTGCGTTTGTTAAACTTTCCACTGTGATG
TGATCATTGAAAACGTTGAGCGAGCGCAAAACCGGAAAAGTGTACACCCTTTCGCACCCC
TTCCTGCCCTTTGCATTCTGGCACTTCTTCGGCCCGCGTTTGGCATAAAATTAAGGTACA
CATCCGGTGACAGCATTACGCAGCATTCGCTCCACCGACCACAATGGTTATTTTCCGGTC
AGTTTGTTTGTGTGCGAAACAATCTCACGATTCCGTAGGGAAGGGATCCCTTCCAACGGG
CTGTCGCGCCCTTTACCTCCCGCCGGCTCCCGGGGGGGATGAGTGTAAAACAATTAAATT
TTCATGCTCATGTGATGCTTGTGCTGTGATGTGGAAATCGGCTTCGGTCGGGCCCCCTTC
CCCCTCGCGGGTGC

consensusID : consensus_2295#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 314
fasta sequence

                              [CCGCGGACGCGTGGGTCCGACGTTAGGGTCTGCGCGTGTACATTTATTTTCAGTTGGAATTAGACCGATCCGCTACCGGGGGGGGTGTTGTGCGCTTCGAGGCGGAGAGAGAAAGAACAAAAACAAACAAAAAAAGGAATAATATCGTGTGTACAGTGTGCATCAGAGCGCGTGTGAAAAATCAATAATGTCGCCCAAATGCACTGCGAACGGGTGTAAACACCGAACAACAGCCCCAAACCACACGGAAGGACTGTTGAGCCGACGATCTGACTGTTGACACAGCAACCTAATTGGAAACAGCAGCGGGATTT]

[+] EMBL BM598606             [CCGCGGACGCGTGGGTCCGACGTTAGGGTCTGCGCGTGTACATTTATTTTCAGTTGGAATTAGACCGATCCGCTACCGGGGGGGGTGTTGTGCGCTTCGAGGCGGAGAGAGAAAGAACAAAAACAAACAAAAAAAGGAATAATATCGTGTGTACAGTGTGCATCAGAGCGCGTGTGAAAAATCAATAATGTCGCCCAAATGCACTGCGAACGGGTGTAAACACCGAACAACAGCCCCAAACCACACGGAAGGACTGTTGAGCCGACGATCTGACTGTTGACACAGCAACCTAATTGGAAACAGCAGCGGGATTT]




>consensus_2295#1
CCGCGGACGCGTGGGTCCGACGTTAGGGTCTGCGCGTGTACATTTATTTTCAGTTGGAAT
TAGACCGATCCGCTACCGGGGGGGGTGTTGTGCGCTTCGAGGCGGAGAGAGAAAGAACAA
AAACAAACAAAAAAAGGAATAATATCGTGTGTACAGTGTGCATCAGAGCGCGTGTGAAAA
ATCAATAATGTCGCCCAAATGCACTGCGAACGGGTGTAAACACCGAACAACAGCCCCAAA
CCACACGGAAGGACTGTTGAGCCGACGATCTGACTGTTGACACAGCAACCTAATTGGAAA
CAGCAGCGGGATTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2295#0      CCGCCCACGCGTCCGTGAAAAATCAATAATGTTGCCCAAATGCACTGCGTACCAGAGGAT 60
consensus_2295#1      ------------------------------------------------------------
                                                                                  

consensus_2295#0      GGGGTGTAAACACCGAACAACAGCCCCAAACCACACGGAAGCTGTTGAGCCGACGATCTG 120
consensus_2295#1      ------------------------------------------------------------
                                                                                  

consensus_2295#0      ACTGTTGACACTGCAACCTAATTGGAAACAGCAGCGGATTTTCCGCAGCAGCACCAATCG 180
consensus_2295#1      ----------CCGCGGAC-GCGTGGGTCCGACGTTAGGGTCTGCGCGTGTACATTTATT- 48
                                * **   *    ***   *  *    *  * * ***     **   **  

consensus_2295#0      CATCGAAAACATTTCCGCTTGCAATCCCTCGCTGCGTTTGTTAAACTTTCCACTGTGATG 240
consensus_2295#1      -TTCAGTTGGAATTAGAC---CGATCCGCTACCGGGGGGGGTG--TTGTGCGCTTCGAGG 102
                        **      * **   *   * ****    * * *   * *    * * * **  ** *

consensus_2295#0      TGATCATTGAAAACGTTGAGCGAGCGCAAAACCGGAAAAGTGTACACCCTTTCGCACCCC 300
consensus_2295#1      CGGAGAGAGAAA-----GAACAAAAACAAA--CAAAAAAAGGAATAATATCGTGTG---- 151
                       *   *  ****     ** * *   ****  *  ****  * * *   *   *      

consensus_2295#0      TTCCTGCCCTTTGCATTCTGGCACTTCTTCGGCCCGCGTT-TGGCATAAAATTAAGGTAC 359
consensus_2295#1      ----TACAGTGTGCATCAGAGCGCGTGTGAAAAATCAATAATGTCGCCCAAATGCACTGC 207
                          * *  * *****    ** * * *          *  ** *    ** *    * *

consensus_2295#0      ACATCCGGTGACAGCATTACGCAGCATTCGCTCCACCGACCACAATGGTTATTTTCCGGT 419
consensus_2295#1      G-AACGGGTGTAAACACCGAACAACAGCC-CCAAACCACACGGAAGGACTGTTGAGCCGA 265
                        * * ****  * **     ** **  * *   ***   *  ** *  * **   * * 

consensus_2295#0      CAGTTTGTTTGTGTGCGAAACAATCTCACGATTCCGTAGGGAAGGGATCCCTTCCAACGG 479
consensus_2295#1      CGATCTGACTGTTGACACAGCAACCTAATTGGAA-ACAGCAGCGGGATTT---------- 314
                      *  * **  ***   *  * *** ** *         **    *****            

consensus_2295#0      GCTGTCGCGCCCTTTACCTCCCGCCGGCTCCCGGGGGGGATGAGTGTAAAACAATTAAAT 539
consensus_2295#1      ------------------------------------------------------------
                                                                                  

consensus_2295#0      TTTCATGCTCATGTGATGCTTGTGCTGTGATGTGGAAATCGGCTTCGGTCGGGCCCCCTT 599
consensus_2295#1      ------------------------------------------------------------
                                                                                  

consensus_2295#0      CCCCCTCGCGGGTGC 614
consensus_2295#1      ---------------