cluster # 2321

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Anopheles gambiae
cluster # 2321 cluster # 2321 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2321#0 length = 634 sequences # 1

consensus_2321#1 length = 570 sequences # 1

consensusID : consensus_2321#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 634
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGTCGCCTGGAGCTCGCACGCGGGCCACGATTTTCGTAGTTTTTTGTGAATAAAACAATTAAATCGCTATGAAAGCCATAATACAGCGTGTAACGTGTGCGAAGGTAACGGGGCACGGAAGTTACTTAATTTGCGGCTGTTTGAGAACCCTTCCACCGGCAAACGATGGTCGGAATCGGTGGTGGATCTGCAGCTGGAGATGCTGTGCGTCAGCCAGTTCACGCTGTACCATCGGTTGAAGGGCAACCGTCCCGATTTCAGTCGAGCCATGCAGGGACCGGAGGCGCAGCAGCTGTACGAATCGCTGCTGCAGAGGATGCGGAACGAGTACGCGACGGAGCGCATACTGGATGGGCGGTTCGGGGCGATGATGCAGGTGCACGTGGTGAACGATGGGCCGGTTACGCTGGAAATTGAATCTCCCGTACCGAGCGAATACGAGCGGCAAAAGCTGCAGCGAGCGTCCGAACGGAATGCGAAATCGGACAAGCCGGTGGGGACGAAGGGCACGGATGGTGGTGCTGAGGGTACGAGTGGAAAGGTTAGCAAGGAATCGGAAAGCAGTTCATGAACACAGTGCTTTAATAAAATATAATTTTATTGCCAATT]

[+] EMBL BM598082             [CCGCGGACGCGTGGGCGGACGCGTGGGTCGCCTGGAGCTCGCACGCGGGCCACGATTTTCGTAGTTTTTTGTGAATAAAACAATTAAATCGCTATGAAAGCCATAATACAGCGTGTAACGTGTGCGAAGGTAACGGGGCACGGAAGTTACTTAATTTGCGGCTGTTTGAGAACCCTTCCACCGGCAAACGATGGTCGGAATCGGTGGTGGATCTGCAGCTGGAGATGCTGTGCGTCAGCCAGTTCACGCTGTACCATCGGTTGAAGGGCAACCGTCCCGATTTCAGTCGAGCCATGCAGGGACCGGAGGCGCAGCAGCTGTACGAATCGCTGCTGCAGAGGATGCGGAACGAGTACGCGACGGAGCGCATACTGGATGGGCGGTTCGGGGCGATGATGCAGGTGCACGTGGTGAACGATGGGCCGGTTACGCTGGAAATTGAATCTCCCGTACCGAGCGAATACGAGCGGCAAAAGCTGCAGCGAGCGTCCGAACGGAATGCGAAATCGGACAAGCCGGTGGGGACGAAGGGCACGGATGGTGGTGCTGAGGGTACGAGTGGAAAGGTTAGCAAGGAATCGGAAAGCAGTTCATGAACACAGTGCTTTAATAAAATATAATTTTATTGCCAATT]




>consensus_2321#0
CCGCGGACGCGTGGGCGGACGCGTGGGTCGCCTGGAGCTCGCACGCGGGCCACGATTTTC
GTAGTTTTTTGTGAATAAAACAATTAAATCGCTATGAAAGCCATAATACAGCGTGTAACG
TGTGCGAAGGTAACGGGGCACGGAAGTTACTTAATTTGCGGCTGTTTGAGAACCCTTCCA
CCGGCAAACGATGGTCGGAATCGGTGGTGGATCTGCAGCTGGAGATGCTGTGCGTCAGCC
AGTTCACGCTGTACCATCGGTTGAAGGGCAACCGTCCCGATTTCAGTCGAGCCATGCAGG
GACCGGAGGCGCAGCAGCTGTACGAATCGCTGCTGCAGAGGATGCGGAACGAGTACGCGA
CGGAGCGCATACTGGATGGGCGGTTCGGGGCGATGATGCAGGTGCACGTGGTGAACGATG
GGCCGGTTACGCTGGAAATTGAATCTCCCGTACCGAGCGAATACGAGCGGCAAAAGCTGC
AGCGAGCGTCCGAACGGAATGCGAAATCGGACAAGCCGGTGGGGACGAAGGGCACGGATG
GTGGTGCTGAGGGTACGAGTGGAAAGGTTAGCAAGGAATCGGAAAGCAGTTCATGAACAC
AGTGCTTTAATAAAATATAATTTTATTGCCAATT

consensusID : consensus_2321#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 570
fasta sequence

                              [AACTGGTGAGCTCGATCGGTCGTGGCTTGTGCGTGCTGGTCGGCATCTCTTCCGACGACAACGCCAGCGACGTGGAGTGGATGGCACGGAAGTTACTTAATTTGCGGCTGTTTGAGAACCCTTCCACCGGCAAACGATGGTCGGAATCGGTGGTGGATCTGCAGCTGGAGATGCTGTGCGTCAGCCAGTTCACGCTGTACCATCGGTTGAAGGGCAACCGTCCCGATTTCAGCCGAGCCATGCAGGGACCGGAAGCGCAGCAGCTGTACGAATCGCTGCTGCAGAGGATGCGGAACGAGTACGCGACGGAGCGCATACTGGATGGGCGGTTCGGGGCGATGATGCAGGTGCACGTGGTGAACGATGGGCCGGTTACGCTGGAAATTGAATCTCCGGTACCGAGCGAATACGAGCGGCAAAAGCTGCAGCGAGCGTCCGAACGGAATGCGAAATCGGACAAGTCGGATGGGAGGAAGGTCACGGATGGTGGTGCTGAGGGTACGAGTGGAAAGGGTTGCAAGGAATCGGAAAGCAGTTCATGAGCACAGTGCTTTAATAAAATATAATTTT]

[+] EMBL BX608861             [AACTGGTGAGCTCGATCGGTCGTGGCTTGTGCGTGCTGGTCGGCATCTCTTCCGACGACAACGCCAGCGACGTGGAGTGGATGGCACGGAAGTTACTTAATTTGCGGCTGTTTGAGAACCCTTCCACCGGCAAACGATGGTCGGAATCGGTGGTGGATCTGCAGCTGGAGATGCTGTGCGTCAGCCAGTTCACGCTGTACCATCGGTTGAAGGGCAACCGTCCCGATTTCAGCCGAGCCATGCAGGGACCGGAAGCGCAGCAGCTGTACGAATCGCTGCTGCAGAGGATGCGGAACGAGTACGCGACGGAGCGCATACTGGATGGGCGGTTCGGGGCGATGATGCAGGTGCACGTGGTGAACGATGGGCCGGTTACGCTGGAAATTGAATCTCCGGTACCGAGCGAATACGAGCGGCAAAAGCTGCAGCGAGCGTCCGAACGGAATGCGAAATCGGACAAGTCGGATGGGAGGAAGGTCACGGATGGTGGTGCTGAGGGTACGAGTGGAAAGGGTTGCAAGGAATCGGAAAGCAGTTCATGAGCACAGTGCTTTAATAAAATATAATTTT]




>consensus_2321#1
AACTGGTGAGCTCGATCGGTCGTGGCTTGTGCGTGCTGGTCGGCATCTCTTCCGACGACA
ACGCCAGCGACGTGGAGTGGATGGCACGGAAGTTACTTAATTTGCGGCTGTTTGAGAACC
CTTCCACCGGCAAACGATGGTCGGAATCGGTGGTGGATCTGCAGCTGGAGATGCTGTGCG
TCAGCCAGTTCACGCTGTACCATCGGTTGAAGGGCAACCGTCCCGATTTCAGCCGAGCCA
TGCAGGGACCGGAAGCGCAGCAGCTGTACGAATCGCTGCTGCAGAGGATGCGGAACGAGT
ACGCGACGGAGCGCATACTGGATGGGCGGTTCGGGGCGATGATGCAGGTGCACGTGGTGA
ACGATGGGCCGGTTACGCTGGAAATTGAATCTCCGGTACCGAGCGAATACGAGCGGCAAA
AGCTGCAGCGAGCGTCCGAACGGAATGCGAAATCGGACAAGTCGGATGGGAGGAAGGTCA
CGGATGGTGGTGCTGAGGGTACGAGTGGAAAGGGTTGCAAGGAATCGGAAAGCAGTTCAT
GAGCACAGTGCTTTAATAAAATATAATTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2321#0      CCGCGGACGCGTGGGCGGACGCGTGGGTCGCCTGGAGCTCGCACGCGGGCCACGATTTTC 60
consensus_2321#1      -------------------------------------------------AACTGGTGAGC 11
                                                                           * *   *

consensus_2321#0      GTAGTTTTTTGTGAATAAAACAATTAAATCGCTATGAAAGCCATAATACAGCGTGTAACG 120
consensus_2321#1      TCGATCGGTCGTGGCTTGTGCGTGCTGGTCGGCATCTCTTCCG-ACGACAACGC-CAGCG 69
                          *   * ***  *    *       ***  **     **  *  *** **   * **

consensus_2321#0      TGTGCGAAGGTAACGGGGCACGGAAGTTACTTAATTTGCGGCTGTTTGAGAACCCTTCCA 180
consensus_2321#1      -ACGTGGAGTGGATGG--CACGGAAGTTACTTAATTTGCGGCTGTTTGAGAACCCTTCCA 126
                         * * **   * **  ******************************************

consensus_2321#0      CCGGCAAACGATGGTCGGAATCGGTGGTGGATCTGCAGCTGGAGATGCTGTGCGTCAGCC 240
consensus_2321#1      CCGGCAAACGATGGTCGGAATCGGTGGTGGATCTGCAGCTGGAGATGCTGTGCGTCAGCC 186
                      ************************************************************

consensus_2321#0      AGTTCACGCTGTACCATCGGTTGAAGGGCAACCGTCCCGATTTCAGTCGAGCCATGCAGG 300
consensus_2321#1      AGTTCACGCTGTACCATCGGTTGAAGGGCAACCGTCCCGATTTCAGCCGAGCCATGCAGG 246
                      ********************************************** *************

consensus_2321#0      GACCGGAGGCGCAGCAGCTGTACGAATCGCTGCTGCAGAGGATGCGGAACGAGTACGCGA 360
consensus_2321#1      GACCGGAAGCGCAGCAGCTGTACGAATCGCTGCTGCAGAGGATGCGGAACGAGTACGCGA 306
                      ******* ****************************************************

consensus_2321#0      CGGAGCGCATACTGGATGGGCGGTTCGGGGCGATGATGCAGGTGCACGTGGTGAACGATG 420
consensus_2321#1      CGGAGCGCATACTGGATGGGCGGTTCGGGGCGATGATGCAGGTGCACGTGGTGAACGATG 366
                      ************************************************************

consensus_2321#0      GGCCGGTTACGCTGGAAATTGAATCTCCCGTACCGAGCGAATACGAGCGGCAAAAGCTGC 480
consensus_2321#1      GGCCGGTTACGCTGGAAATTGAATCTCCGGTACCGAGCGAATACGAGCGGCAAAAGCTGC 426
                      **************************** *******************************

consensus_2321#0      AGCGAGCGTCCGAACGGAATGCGAAATCGGACAAGCCGGTGGGGACGAAGGGCACGGATG 540
consensus_2321#1      AGCGAGCGTCCGAACGGAATGCGAAATCGGACAAGTCGGATGGGAGGAAGGTCACGGATG 486
                      *********************************** ***  **** ***** ********

consensus_2321#0      GTGGTGCTGAGGGTACGAGTGGAAAGGTTAGCAAGGAATCGGAAAGCAGTTCATGAACAC 600
consensus_2321#1      GTGGTGCTGAGGGTACGAGTGGAAAGGGTTGCAAGGAATCGGAAAGCAGTTCATGAGCAC 546
                      *************************** * ************************** ***

consensus_2321#0      AGTGCTTTAATAAAATATAATTTTATTGCCAATT 634
consensus_2321#1      AGTGCTTTAATAAAATATAATTTT---------- 570
                      ************************