cluster # 2347

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Anopheles gambiae
cluster # 2347 cluster # 2347 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2347#0 length = 640 sequences # 1

consensus_2347#1 length = 439 sequences # 1

consensusID : consensus_2347#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 640
fasta sequence

                              [CCGATCCCTCGATGCGGGGGCGCGGCGGCGACATGCGCAACCGCATTATGGGGGGCGACGTCATGTCCAAGCGTGGGGTCGATATGAAGGTTTCCAAGAAAATTCTCATCAAGCGTGCGCTTCAGGCGGCTAAGGATGGGTACGAGGATTCGGCCTCCGACAATGAGGATGAGGACGACGAGGAGGATGACGACGGTGGAGACGATGATGCGGGACCGTCCCGGGCTAAGAAGGCCAAGAAGGCTGACGCCGATGATGATGATGAGGAGGATGACGAGGAAAACGTCAAGCAGGAAAAGAGTGAGATGTGGGACGATGACGACGATGGAGGCGATGGAAAGTCCAAATCTTCCGCTCACAACGAGGATGAGGACGATGTCAACACCACTGGTGCTACGGTTGACGATGGTGACGATGAAAAGGATGGCTCGAAGCAGCAAACGCCGACGAAGAAATCCGCCAAGAAGGAAGATGCTAAGGATAGCAACGCGGAAGACGACCGCAAGACGGCGGACGACGGTAGCGATAAGAAGCGTTCGACAAAGATCAACACCAAGTATCGCACGTCAAACTTTATTAAGCTCACGTGCACGCACTGCAAGCTAAAGTGTGTCACTTTCAAGGAGTACCAGACGCATCT]

[+] EMBL BM597645             [CCGATCCCTCGATGCGGGGGCGCGGCGGCGACATGCGCAACCGCATTATGGGGGGCGACGTCATGTCCAAGCGTGGGGTCGATATGAAGGTTTCCAAGAAAATTCTCATCAAGCGTGCGCTTCAGGCGGCTAAGGATGGGTACGAGGATTCGGCCTCCGACAATGAGGATGAGGACGACGAGGAGGATGACGACGGTGGAGACGATGATGCGGGACCGTCCCGGGCTAAGAAGGCCAAGAAGGCTGACGCCGATGATGATGATGAGGAGGATGACGAGGAAAACGTCAAGCAGGAAAAGAGTGAGATGTGGGACGATGACGACGATGGAGGCGATGGAAAGTCCAAATCTTCCGCTCACAACGAGGATGAGGACGATGTCAACACCACTGGTGCTACGGTTGACGATGGTGACGATGAAAAGGATGGCTCGAAGCAGCAAACGCCGACGAAGAAATCCGCCAAGAAGGAAGATGCTAAGGATAGCAACGCGGAAGACGACCGCAAGACGGCGGACGACGGTAGCGATAAGAAGCGTTCGACAAAGATCAACACCAAGTATCGCACGTCAAACTTTATTAAGCTCACGTGCACGCACTGCAAGCTAAAGTGTGTCACTTTCAAGGAGTACCAGACGCATCT]




>consensus_2347#0
CCGATCCCTCGATGCGGGGGCGCGGCGGCGACATGCGCAACCGCATTATGGGGGGCGACG
TCATGTCCAAGCGTGGGGTCGATATGAAGGTTTCCAAGAAAATTCTCATCAAGCGTGCGC
TTCAGGCGGCTAAGGATGGGTACGAGGATTCGGCCTCCGACAATGAGGATGAGGACGACG
AGGAGGATGACGACGGTGGAGACGATGATGCGGGACCGTCCCGGGCTAAGAAGGCCAAGA
AGGCTGACGCCGATGATGATGATGAGGAGGATGACGAGGAAAACGTCAAGCAGGAAAAGA
GTGAGATGTGGGACGATGACGACGATGGAGGCGATGGAAAGTCCAAATCTTCCGCTCACA
ACGAGGATGAGGACGATGTCAACACCACTGGTGCTACGGTTGACGATGGTGACGATGAAA
AGGATGGCTCGAAGCAGCAAACGCCGACGAAGAAATCCGCCAAGAAGGAAGATGCTAAGG
ATAGCAACGCGGAAGACGACCGCAAGACGGCGGACGACGGTAGCGATAAGAAGCGTTCGA
CAAAGATCAACACCAAGTATCGCACGTCAAACTTTATTAAGCTCACGTGCACGCACTGCA
AGCTAAAGTGTGTCACTTTCAAGGAGTACCAGACGCATCT

consensusID : consensus_2347#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 439
fasta sequence

                              [CGCATCATGGGCGGGCACCACCGGCGAACGGATGGCATGCGGCCGATGACGATGCACAACCGGCGCTATCCCTCGATGCGGGGGCGCGGCGGCGACATGCGCAACCGCATTATGGGGGGCGACGTCATGTCCAAGCGTGGGGTCGATATGAAGATTTCCAAGAAAATTCTCATCAAGCGTGCGCTTCAGGCGTCTAAGGATGGTTACGAGGATTCGGCCTCCGACAATGAGGATGAGGACGACGAGGAGGATGATGACGGTGGCGATGATGATGCGGGACCGTCCCGTGCTAAGAAGGCCAAGAAGGCTGACGCCGATGACGATGACGACGATGGAGGCGATGGAAAGTCCAAATCTTCCGCTCACAACGAGGATGAGGACGATGCCAACACTACCGGTGCTACGGTTGACGATGGTGACGATGAAAAGGATGGCTCGA]

[+] EMBL BX616035             [CGCATCATGGGCGGGCACCACCGGCGAACGGATGGCATGCGGCCGATGACGATGCACAACCGGCGCTATCCCTCGATGCGGGGGCGCGGCGGCGACATGCGCAACCGCATTATGGGGGGCGACGTCATGTCCAAGCGTGGGGTCGATATGAAGATTTCCAAGAAAATTCTCATCAAGCGTGCGCTTCAGGCGTCTAAGGATGGTTACGAGGATTCGGCCTCCGACAATGAGGATGAGGACGACGAGGAGGATGATGACGGTGGCGATGATGATGCGGGACCGTCCCGTGCTAAGAAGGCCAAGAAGGCTGACGCCGATGACGATGACGACGATGGAGGCGATGGAAAGTCCAAATCTTCCGCTCACAACGAGGATGAGGACGATGCCAACACTACCGGTGCTACGGTTGACGATGGTGACGATGAAAAGGATGGCTCGA]




>consensus_2347#1
CGCATCATGGGCGGGCACCACCGGCGAACGGATGGCATGCGGCCGATGACGATGCACAAC
CGGCGCTATCCCTCGATGCGGGGGCGCGGCGGCGACATGCGCAACCGCATTATGGGGGGC
GACGTCATGTCCAAGCGTGGGGTCGATATGAAGATTTCCAAGAAAATTCTCATCAAGCGT
GCGCTTCAGGCGTCTAAGGATGGTTACGAGGATTCGGCCTCCGACAATGAGGATGAGGAC
GACGAGGAGGATGATGACGGTGGCGATGATGATGCGGGACCGTCCCGTGCTAAGAAGGCC
AAGAAGGCTGACGCCGATGACGATGACGACGATGGAGGCGATGGAAAGTCCAAATCTTCC
GCTCACAACGAGGATGAGGACGATGCCAACACTACCGGTGCTACGGTTGACGATGGTGAC
GATGAAAAGGATGGCTCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2347#0      ------------------------------------------------------------
consensus_2347#1      CGCATCATGGGCGGGCACCACCGGCGAACGGATGGCATGCGGCCGATGACGATGCACAAC 60
                                                                                  

consensus_2347#0      ----CCGATCCCTCGATGCGGGGGCGCGGCGGCGACATGCGCAACCGCATTATGGGGGGC 56
consensus_2347#1      CGGCGCTATCCCTCGATGCGGGGGCGCGGCGGCGACATGCGCAACCGCATTATGGGGGGC 120
                           * *****************************************************

consensus_2347#0      GACGTCATGTCCAAGCGTGGGGTCGATATGAAGGTTTCCAAGAAAATTCTCATCAAGCGT 116
consensus_2347#1      GACGTCATGTCCAAGCGTGGGGTCGATATGAAGATTTCCAAGAAAATTCTCATCAAGCGT 180
                      ********************************* **************************

consensus_2347#0      GCGCTTCAGGCGGCTAAGGATGGGTACGAGGATTCGGCCTCCGACAATGAGGATGAGGAC 176
consensus_2347#1      GCGCTTCAGGCGTCTAAGGATGGTTACGAGGATTCGGCCTCCGACAATGAGGATGAGGAC 240
                      ************ ********** ************************************

consensus_2347#0      GACGAGGAGGATGACGACGGTGGAGACGATGATGCGGGACCGTCCCGGGCTAAGAAGGCC 236
consensus_2347#1      GACGAGGAGGATGATGACGGTGGCGATGATGATGCGGGACCGTCCCGTGCTAAGAAGGCC 300
                      ************** ******** ** ******************** ************

consensus_2347#0      AAGAAGGCTGACGCCGATGATGATGATGAGGAGGATGACGAGGAAAACGTCAAGCAGGAA 296
consensus_2347#1      AAGAAGGCTGACGCCGATGA---------------------------------------- 320
                      ********************                                        

consensus_2347#0      AAGAGTGAGATGTGGGACGATGACGACGATGGAGGCGATGGAAAGTCCAAATCTTCCGCT 356
consensus_2347#1      -----------------CGATGACGACGATGGAGGCGATGGAAAGTCCAAATCTTCCGCT 363
                                       *******************************************

consensus_2347#0      CACAACGAGGATGAGGACGATGTCAACACCACTGGTGCTACGGTTGACGATGGTGACGAT 416
consensus_2347#1      CACAACGAGGATGAGGACGATGCCAACACTACCGGTGCTACGGTTGACGATGGTGACGAT 423
                      ********************** ****** ** ***************************

consensus_2347#0      GAAAAGGATGGCTCGAAGCAGCAAACGCCGACGAAGAAATCCGCCAAGAAGGAAGATGCT 476
consensus_2347#1      GAAAAGGATGGCTCGA-------------------------------------------- 439
                      ****************                                            

consensus_2347#0      AAGGATAGCAACGCGGAAGACGACCGCAAGACGGCGGACGACGGTAGCGATAAGAAGCGT 536
consensus_2347#1      ------------------------------------------------------------
                                                                                  

consensus_2347#0      TCGACAAAGATCAACACCAAGTATCGCACGTCAAACTTTATTAAGCTCACGTGCACGCAC 596
consensus_2347#1      ------------------------------------------------------------
                                                                                  

consensus_2347#0      TGCAAGCTAAAGTGTGTCACTTTCAAGGAGTACCAGACGCATCT 640
consensus_2347#1      --------------------------------------------