cluster # 2348

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Anopheles gambiae
cluster # 2348 cluster # 2348 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2348#0 length = 618 sequences # 1

consensus_2348#1 length = 566 sequences # 1

consensusID : consensus_2348#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 618
fasta sequence

                              [CCGTAATTATGCTTCTCTTTCCCGCTAGCAGTAAGCCCTCTTTTCCCCATTTACATTTCTTTACATGATTGGGTGTGTGTAGTTGTTTTTTTTTAAATATTATTAGCATGTATTTTTGTTTATAAATTAAATTCCCCCCCTTTTTTCACTATATTATCCCGCTCTCGTGTGTTCCTCAAAAGTGTGTTTTGTAAAACAGCTCCTTAACATGTGCAAACTAATTGGCCAAAAAAAAAAACATAAAGAACACAGCCGACAGAGGGGGAACGGTAGCAACCAAAAAATGCAAACAACTGATCGATACAGAGAGAAAGAGAGAAAGAGATGAACGGTAGAGAAGGGAAGAACTTTATGGTACAACAATACTTCGGTGGTAAACACAAGTTTAGGCTTTAAGAGGGAAGAAGCGAAGAAAATTGATTCGACCGGGAGAGAACAACGGTTTTGTGCAACAGAAAATCAAGACACACACACACACATAACACGGAAAAAAGCCAGACAGACAGTGGCGTTGGTATCGCTCATGCAATTTCTGAACGAATTATAAGTGTAAGAGAAAAAAGAGACTCTCAGTAGTAGTGTGGTACTGCGCGCGGCGTTCGGCGCGGCGGAAACTAG]

[+] EMBL BM597621             [CCGTAATTATGCTTCTCTTTCCCGCTAGCAGTAAGCCCTCTTTTCCCCATTTACATTTCTTTACATGATTGGGTGTGTGTAGTTGTTTTTTTTTAAATATTATTAGCATGTATTTTTGTTTATAAATTAAATTCCCCCCCTTTTTTCACTATATTATCCCGCTCTCGTGTGTTCCTCAAAAGTGTGTTTTGTAAAACAGCTCCTTAACATGTGCAAACTAATTGGCCAAAAAAAAAAACATAAAGAACACAGCCGACAGAGGGGGAACGGTAGCAACCAAAAAATGCAAACAACTGATCGATACAGAGAGAAAGAGAGAAAGAGATGAACGGTAGAGAAGGGAAGAACTTTATGGTACAACAATACTTCGGTGGTAAACACAAGTTTAGGCTTTAAGAGGGAAGAAGCGAAGAAAATTGATTCGACCGGGAGAGAACAACGGTTTTGTGCAACAGAAAATCAAGACACACACACACACATAACACGGAAAAAAGCCAGACAGACAGTGGCGTTGGTATCGCTCATGCAATTTCTGAACGAATTATAAGTGTAAGAGAAAAAAGAGACTCTCAGTAGTAGTGTGGTACTGCGCGCGGCGTTCGGCGCGGCGGAAACTAG]




>consensus_2348#0
CCGTAATTATGCTTCTCTTTCCCGCTAGCAGTAAGCCCTCTTTTCCCCATTTACATTTCT
TTACATGATTGGGTGTGTGTAGTTGTTTTTTTTTAAATATTATTAGCATGTATTTTTGTT
TATAAATTAAATTCCCCCCCTTTTTTCACTATATTATCCCGCTCTCGTGTGTTCCTCAAA
AGTGTGTTTTGTAAAACAGCTCCTTAACATGTGCAAACTAATTGGCCAAAAAAAAAAACA
TAAAGAACACAGCCGACAGAGGGGGAACGGTAGCAACCAAAAAATGCAAACAACTGATCG
ATACAGAGAGAAAGAGAGAAAGAGATGAACGGTAGAGAAGGGAAGAACTTTATGGTACAA
CAATACTTCGGTGGTAAACACAAGTTTAGGCTTTAAGAGGGAAGAAGCGAAGAAAATTGA
TTCGACCGGGAGAGAACAACGGTTTTGTGCAACAGAAAATCAAGACACACACACACACAT
AACACGGAAAAAAGCCAGACAGACAGTGGCGTTGGTATCGCTCATGCAATTTCTGAACGA
ATTATAAGTGTAAGAGAAAAAAGAGACTCTCAGTAGTAGTGTGGTACTGCGCGCGGCGTT
CGGCGCGGCGGAAACTAG

consensusID : consensus_2348#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 566
fasta sequence

                              [TGTTTTTTTTTATATTATTAGCATGTATTTTTCTTTATAAATTAAAATTCCCCCCTTTTTTCACTATAATATCCCGCTCTCGTGTGTTCCTCAAAAGTGTGTTTTGTAAAACAGCTCCTTAACATGTGCAAACTAATTGGCCAAAAAAACATAATGAACAGCCGACAGAGGGGAAAAGGTAGCAACCAAAAAATGCAAACAACCGATCGATGCAGAGAGAGATGCACGGTAGAGAAGGGAAGAACTTTATGGTACAACATTACTTCGGTGGTAAACACAAGTTTAGGCTTTAAGAGGGAAGAAGCGACGAAAATTGATTCGACCGGGAGAAGAACAACGGTTTTGTGCAAAAGAAAATCAAGACACACACACACACACATAACACGGAAAAAAGCCAGACAGACAGTGGCGTTGGTATCGCTCATGCAATTTCTGAACGAATTATAAGTGTAAGAGAAAACAGAGACTCTCAGTAGTAGTGTGGTACTGCGCGCGGCGTTCGGCGCGGCGGAAACTANGCCAGGATACGTTTTATAAATATTTGTATAGAGAGACNAAGCTTACCG]

[+] EMBL BX620013             [TGTTTTTTTTTATATTATTAGCATGTATTTTTCTTTATAAATTAAAATTCCCCCCTTTTTTCACTATAATATCCCGCTCTCGTGTGTTCCTCAAAAGTGTGTTTTGTAAAACAGCTCCTTAACATGTGCAAACTAATTGGCCAAAAAAACATAATGAACAGCCGACAGAGGGGAAAAGGTAGCAACCAAAAAATGCAAACAACCGATCGATGCAGAGAGAGATGCACGGTAGAGAAGGGAAGAACTTTATGGTACAACATTACTTCGGTGGTAAACACAAGTTTAGGCTTTAAGAGGGAAGAAGCGACGAAAATTGATTCGACCGGGAGAAGAACAACGGTTTTGTGCAAAAGAAAATCAAGACACACACACACACACATAACACGGAAAAAAGCCAGACAGACAGTGGCGTTGGTATCGCTCATGCAATTTCTGAACGAATTATAAGTGTAAGAGAAAACAGAGACTCTCAGTAGTAGTGTGGTACTGCGCGCGGCGTTCGGCGCGGCGGAAACTANGCCAGGATACGTTTTATAAATATTTGTATAGAGAGACNAAGCTTACCG]




>consensus_2348#1
TGTTTTTTTTTATATTATTAGCATGTATTTTTCTTTATAAATTAAAATTCCCCCCTTTTT
TCACTATAATATCCCGCTCTCGTGTGTTCCTCAAAAGTGTGTTTTGTAAAACAGCTCCTT
AACATGTGCAAACTAATTGGCCAAAAAAACATAATGAACAGCCGACAGAGGGGAAAAGGT
AGCAACCAAAAAATGCAAACAACCGATCGATGCAGAGAGAGATGCACGGTAGAGAAGGGA
AGAACTTTATGGTACAACATTACTTCGGTGGTAAACACAAGTTTAGGCTTTAAGAGGGAA
GAAGCGACGAAAATTGATTCGACCGGGAGAAGAACAACGGTTTTGTGCAAAAGAAAATCA
AGACACACACACACACACATAACACGGAAAAAAGCCAGACAGACAGTGGCGTTGGTATCG
CTCATGCAATTTCTGAACGAATTATAAGTGTAAGAGAAAACAGAGACTCTCAGTAGTAGT
GTGGTACTGCGCGCGGCGTTCGGCGCGGCGGAAACTANGCCAGGATACGTTTTATAAATA
TTTGTATAGAGAGACNAAGCTTACCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2348#0      CCGTAATTATGCTTCTCTTTCCCGCTAGCAGTAAGCCCTCTTTTCCCCATTTACATTTCT 60
consensus_2348#1      ------------------------------------------------------------
                                                                                  

consensus_2348#0      TTACATGATTGGGTGTGTGTAGTTGTTTTTTTTTAAATATTATTAGCATGTATTTTTGTT 120
consensus_2348#1      -----------------------TGTTTTTTTTT--ATATTATTAGCATGTATTTTTCTT 35
                                             ***********  ********************* **

consensus_2348#0      TATAAATTAAATTCCCCCCCTTTTTTCACTATATTATCCCGCTCTCGTGTGTTCCTCAAA 180
consensus_2348#1      TATAAATTAAAATTCCCCCCTTTTTTCACTATAATATCCCGCTCTCGTGTGTTCCTCAAA 95
                      *********** * ******************* **************************

consensus_2348#0      AGTGTGTTTTGTAAAACAGCTCCTTAACATGTGCAAACTAATTGGCCAAAAAAAAAAACA 240
consensus_2348#1      AGTGTGTTTTGTAAAACAGCTCCTTAACATGTGCAAACTAATTGGCCAAAA----AAACA 151
                      ***************************************************    *****

consensus_2348#0      TAAAGAACACAGCCGACAGAGGGGGAACGGTAGCAACCAAAAAATGCAAACAACTGATCG 300
consensus_2348#1      TAATGAAC--AGCCGACAGAGGGGAAAAGGTAGCAACCAAAAAATGCAAACAACCGATCG 209
                      *** ****  ************** ** ************************** *****

consensus_2348#0      ATACAGAGAGAAAGAGAGAAAGAGATGAACGGTAGAGAAGGGAAGAACTTTATGGTACAA 360
consensus_2348#1      ATGCAGAGAGA------------GATGCACGGTAGAGAAGGGAAGAACTTTATGGTACAA 257
                      ** ********            **** ********************************

consensus_2348#0      CAATACTTCGGTGGTAAACACAAGTTTAGGCTTTAAGAGGGAAGAAGCGAAGAAAATTGA 420
consensus_2348#1      CATTACTTCGGTGGTAAACACAAGTTTAGGCTTTAAGAGGGAAGAAGCGACGAAAATTGA 317
                      ** *********************************************** *********

consensus_2348#0      TTCGACCGGGAGA-GAACAACGGTTTTGTGCAACAGAAAATCAAGACACACACACACACA 479
consensus_2348#1      TTCGACCGGGAGAAGAACAACGGTTTTGTGCAAAAGAAAATCAAGACACACACACACACA 377
                      ************* ******************* **************************

consensus_2348#0      --TAACACGGAAAAAAGCCAGACAGACAGTGGCGTTGGTATCGCTCATGCAATTTCTGAA 537
consensus_2348#1      CATAACACGGAAAAAAGCCAGACAGACAGTGGCGTTGGTATCGCTCATGCAATTTCTGAA 437
                        **********************************************************

consensus_2348#0      CGAATTATAAGTGTAAGAGAAAAAAGAGACTCTCAGTAGTAGTGTGGTACTGCGCGCGGC 597
consensus_2348#1      CGAATTATAAGTGTAAGAGAAAACAGAGACTCTCAGTAGTAGTGTGGTACTGCGCGCGGC 497
                      *********************** ************************************

consensus_2348#0      GTTCGGCGCGGCGGAAACTAG--------------------------------------- 618
consensus_2348#1      GTTCGGCGCGGCGGAAACTANGCCAGGATACGTTTTATAAATATTTGTATAGAGAGACNA 557
                      ********************                                        

consensus_2348#0      ---------
consensus_2348#1      AGCTTACCG 566